How To Find Core Genome Snp
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10.3 years ago
HG ★ 1.2k

Hi everyone, I have 10bacterial genome(reads + asselble file) and i wolud like to find core genome SNP among all those genome. Can anyone suggest me how to proced ?? Thank you advance.

snp • 3.0k views
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You mean something like generating 3 VCF files with SNPs and then intersecting them? (http://bedtools.readthedocs.org/en/latest/content/tools/intersect.html)

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