Entering edit mode
10.1 years ago
aleix.arnau1990
▴
10
Hi, I've made a blast with the sequences from a plant's transcriptome which don't match to our genome. We want to know where they come from to try to improve our genome. The problem is that I have thousands of sequences, so, thousands of blast results. So, the question is if there are someone who know how can I know and get the source for each sequence (we want to know if they come from cloroplast, transposons, virus, etc or from some genomic region). Thanks!
"I've made a blast with the sequences from a plant's transcriptome which don't match to our genome." Sorry, do you mind to clarify your question please and give more details, I cannot get it... sequences of what, transcriptomes of what, whose genome? which blast? etc etc.. Did you take transcriptomes of plants that did not match your genome of reference and run blast? against which database? And you want to know where they come from?