Mcl Clustering Implementation For Graph Objects In R?

Question

[mehran.karimzade]

Hello, I could not find any package that performs MCL clustering in R, either on graph objects or other types. Anyone knows if such thing exists?

Thanks

[Neilfws]

This is a "pure R" question. Please indicate relevance to a bioinformatics research problem.

[Buffo]

I think the question is because people from this forum know what exactly mcl produce, and even because people here also works in R platforms. What`s your contribution to answer? Do you have a bad day? Sorry but nobody cares. Actually I am looking for the same issue and everything I get is your sad comment. If you don´t know the answer or can´t help, be quiet. Don´t break the silence if you can´t improve it.

[WouterDeCoster]

Seriously? This thread is 2.9 years old. Why do you think it's necessary to come and post this? Don't break the silence if you can't improve it.

Your reaction is not in line with the expected behavior/attitude of users on biostars so I would suggest you to rethink your statement.

Answer 1

[xunshengbu]

I am looking for similar thing and got a hit to the topic. Is this what you are looking for? Contains the Markov cluster algorithm (MCL) for identifying clusters in networks and graphs. https://cran.r-project.org/web/packages/MCL/