Question: How To Handle Microarray Data In Cytoscape
0
gravatar for avi4you
4.9 years ago by
avi4you20
India
avi4you20 wrote:

i am a begiener, and doing my masters degree research work,, i am currently working on gene expression data for avian influenza in ducks with the help of microarray. i want to make a network of genes which are present in my data for downstream analysis.but i am struck as i dont know how to make network from a microarray gene expression data. i have data in the format :

probe name comman name fold change p valuE

Duck_1254 MYBPC1 2.636 0.01 . .

.

AND SO ON

Please suggest me how to proceed ? and can this be done with the help of cytoscape.

cytoscape microarray • 2.8k views
ADD COMMENTlink modified 4.8 years ago by Biostar ♦♦ 20 • written 4.9 years ago by avi4you20

There are many different kinds of network. What kind do you want to make? Sounds like co-expression?

ADD REPLYlink written 4.9 years ago by Neilfws48k

yes sir co expression network, please guide me

ADD REPLYlink written 4.9 years ago by avi4you20

You might try WGCNA, then.

ADD REPLYlink written 4.9 years ago by Devon Ryan88k

might want to check out CORNET https://cornet.psb.ugent.be/main/tool

ADD REPLYlink written 4.9 years ago by dcolinmorgan100
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