Tool:Shell utilities for QC of FASTQ/FASTA files (based on perl one-liners)
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8.3 years ago

Yesterday, I wrote new perl one-liners to emulate the functionality of FastQC. For visualisation, I am using gplot, a wrapper around gnuplot, that facilitates us to pipe quantitative data directly into gnuplot without the need of generating temporary files. You can find these utilities here (I have wrapped them in shell scripts for ease of use) :

Shell utilities for QC

Hopefully, in coming days, I'll update the webpage to explain the underlying logic and be more clear on what I have done.

Best Wishes,

Umer

FastQC FASTA FASTQ GNUPLOT PERL Tool • 5.3k views
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