Question: From Kegg - Kaas to MetaCyc
1
gravatar for charly.blanche.t
6.1 years ago by
United States
charly.blanche.t20 wrote:

Hello all,

I need help using Metacyc. 

I just finished running my experiment in KEGG - Kaas, analyzing metabolic pathways for the illumina transcriptome (RNA) sequencing data we have, mapping them to Eukaryotes.

I may like to run the same experiment in Metacyc but it is extremely difficult for me to find my way in pathway tools of Metacyc/Ecocyc !!! Could somebody please help?

What I need, I just to know what pathways got mapped and what didn't. The data are from a new specy that as never been annotated.

 

Thank you.

 

rna-seq kegg metacyc • 2.1k views
ADD COMMENTlink modified 5.8 years ago by pixie@bioinfo1.4k • written 6.1 years ago by charly.blanche.t20
0
gravatar for pixie@bioinfo
5.8 years ago by
pixie@bioinfo1.4k
pixie@bioinfo1.4k wrote:

You can use BioCyc/EcoCyc..go to the "Cellular Overview" and make sure you select the species on the top right of the page. You will get an option to upload your Gene/Compound ID together with some values (if required). You have to make sure that the IDs used by you are recognized in BioCyc. The file has to be a simple tab delimited .txt file and not a .csv/excel file.

ADD COMMENTlink written 5.8 years ago by pixie@bioinfo1.4k
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