Identify chip platform given probe ID
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7.6 years ago

Title says it all. I have a list of probe ids that I know are for a murine set and belong to Affymetrix. I would like to do some bioconductor work and I require the name of the platform to retrieve data.

Thanks!

identify Affymetrix probe • 2.9k views
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is the only data you have probeids? or do you for example have an ExpressionSet object?
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I have an Excel spreadsheet with Affymetrix probe ids and some statistics. No ExpressionSets, I'm rotating in a lab that's less than savvy in these things. Oy

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ok, and can you post 10 probe ids?
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1449031_at
1435285_at
1448688_at
1448233_at
1422798_at
1418892_at

AFFX-MURINE_B2_at
AFFX-MURINE_b1_at
AFFX-MUR_b2_at
AFFX-PyruCarbMur/L09192_3_at
AFFX-PyruCarbMur/L09192_5_at

Thanks for helping. I emailed Affy too, but no reply yet.

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7.6 years ago
Ahill ★ 1.9k

MOE430 or MOE430 2.0. All probe sets represented on the GeneChip Mouse Expression Set 430 are included on the GeneChip Mouse Genome 430 2.0 Array. http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL1261

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