Question: Identify chip platform given probe ID
0
gravatar for QVINTVS_FABIVS_MAXIMVS
4.9 years ago by
USA SoCal
QVINTVS_FABIVS_MAXIMVS2.2k wrote:

Title says it all. I have a list of probe ids that I know are for a murine set and belong to Affymetrix. I would like to do some bioconductor work and I require the name of the platform to retrieve data.

 

Thanks!

 

affymetrix identify probe • 2.1k views
ADD COMMENTlink modified 4.6 years ago by Biostar ♦♦ 20 • written 4.9 years ago by QVINTVS_FABIVS_MAXIMVS2.2k
1
is the only data you have probeids? or do you for example have an ExpressionSet object?
ADD REPLYlink written 4.9 years ago by Irsan6.8k

I have an Excel spreadsheet with Affymetrix probe ids and some statistics. No ExpressionSets, I'm rotating in a lab that's less than savvy in these things. Oy 

ADD REPLYlink written 4.9 years ago by QVINTVS_FABIVS_MAXIMVS2.2k
ok, and can you post 10 probe ids?
ADD REPLYlink written 4.9 years ago by Irsan6.8k
1449031_at
1435285_at
1448688_at
1448233_at
1422798_at

1418892_at

AFFX-MURINE_B2_at
AFFX-MURINE_b1_at
AFFX-MUR_b2_at
AFFX-PyruCarbMur/L09192_3_at

AFFX-PyruCarbMur/L09192_5_at

 

Thanks for helping. I emailed Affy too, but no reply yet.

ADD REPLYlink written 4.9 years ago by QVINTVS_FABIVS_MAXIMVS2.2k
2
gravatar for Ahill
4.9 years ago by
Ahill1.4k
United States
Ahill1.4k wrote:

MOE430 or MOE430 2.0.  All probe sets represented on the GeneChip Mouse Expression Set 430 are included on the GeneChip Mouse Genome 430 2.0 Array.  http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL1261  

 

 

ADD COMMENTlink written 4.9 years ago by Ahill1.4k
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