I need help finding a way to merge fastq files from multiple flowcells. I do not have access to a linux server, so the traditional answer to my problem is out. I have some experience coding with Python but it's been a while. I need a way to merge run1_ID001_R1.fastq
with run2_ID001_R1.fastq
, and so on and so forth. Any help would be appreciated. Thank you!
"I do not have access to a linux server". So, what is your environment ?
Windows PC.
install cygwin. and concatenate your fastqs using a "traditional answer"