Question: miRNA Target Prediction Based On Sequence
0
gravatar for Tom A
5.0 years ago by
Tom A90
United States
Tom A90 wrote:

Hello Biostars, 

What are some existing tools/programs that can predict potential miRNA targets based on mature miRNA sequence?

Ideally, I would like to find something contains a built-in 3'UTR alignment of genes and that allows me to input a list of miRNA sequences in a fasta format and a list of gene names (from RefSeq as an example).

Thanks in advance.  

mirna rna-seq prediction sequence • 3.1k views
ADD COMMENTlink modified 5.0 years ago by David Langenberger8.7k • written 5.0 years ago by Tom A90
5
gravatar for David Langenberger
5.0 years ago by
Deutschland
David Langenberger8.7k wrote:

You could try TargetSpy. It doesn't even need alignments. That means it can also find species-specific target sites.

ADD COMMENTlink written 5.0 years ago by David Langenberger8.7k

There is a stand-alone version on the page under 'downloads'.

ADD REPLYlink written 5.0 years ago by David Langenberger8.7k

Thanks! 

ADD REPLYlink written 5.0 years ago by Tom A90
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1706 users visited in the last hour