Tool:ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases.
1
1
Entering edit mode
10.0 years ago
support ▴ 650

Standalone program to visualize enrichment patterns of DNA-interacting proteins at functionally important regions based on next-generation sequencing data:

http://www.ncbi.nlm.nih.gov/pubmed/24735413

--Genohub

ngs.plot NGS-data visualize • 5.7k views
ADD COMMENT
1
Entering edit mode

I don't want to discourage people from submitting tools and publications but what would work best is a little bit more context and personal experiences.

  1. has the submitter tried the tool,
  2. does it really do what it claims to
  3. is it feasible to install it
  4. why is it better than an alternative
  5. etc
ADD REPLY
0
Entering edit mode
10.0 years ago

Looks like a Galaxy tool to make the aggregate profiles and heatmaps we made for various transcription factors in our 2012 Nature paper.

The indexing aspect is interesting, but we may have an answer to that in the coming months that fixes some of the downsides with that style of indexing and compression.

ADD COMMENT
0
Entering edit mode

What is the name of that galaxy (specific) tool?

thanks

ADD REPLY
1
Entering edit mode

Propably deepTools: https://github.com/fidelram/deepTools/wiki

You can also find it in the Galaxy Tool Shed.

Cheers,

Bjoern

ADD REPLY

Login before adding your answer.

Traffic: 2291 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6