Question: Circos: can it be used with gene expression data and Orbitrap/Kinexus data?
0
gravatar for jobinv
5.1 years ago by
jobinv1.1k
Bergen, Norway
jobinv1.1k wrote:

I've looking into using the circos plots that have recently become quite popular as I gather. If I understand correctly, it can be used whenever there is a one-to-one relationship between different types of data, e.g. that "this" genomic region corresponds to "this" mRNA and to "this" protein being translated and to "this" copy number aberration, etc. 

I have quite little experience working with proteomic data and have been asked whether it would be possible to use the circos plot to integrate gene expression data (microarray) with data from Orbitrap and Kinexus proteomics. Is anyone here familiar with these that would be able to help me answer this?

Thanks!

circos • 1.7k views
ADD COMMENTlink modified 5.1 years ago • written 5.1 years ago by jobinv1.1k
1

If you can format it Circos can plot it.  The answer is yes, but the formatting is the trick.

ADD REPLYlink written 5.1 years ago by Zev.Kronenberg11k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1676 users visited in the last hour