Question: Distribution of e-values in Best Reciprocal Blast Hits for Ortholog Mining
0
gravatar for pld
5.3 years ago by
pld4.8k
United States
pld4.8k wrote:

Does anyone have an idea of how the distribution of expect values will look when using reciprocal blast to detect orthologs?

blast rbh brbh ortholog • 1.3k views
ADD COMMENTlink modified 5.3 years ago by SES8.2k • written 5.3 years ago by pld4.8k
3
gravatar for SES
5.3 years ago by
SES8.2k
Vancouver, BC
SES8.2k wrote:

E-values are dependent on the length of the database, so they are not really comparable between analyses. Other reasons you can't directly compare the distribution of e-values is because the duplication history and divergence level between the species being compared might vary between analyses. I would look at the distribution of Ks values, that is commonly used and it will give you something easier to interpret.

ADD COMMENTlink written 5.3 years ago by SES8.2k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1041 users visited in the last hour