Question: NGS pipeline analyses
5
gravatar for Kizuna
6.2 years ago by
Kizuna800
France, Paris
Kizuna800 wrote:

Hi Biostars Users, 

I am rookie in bio-informatics interested in undergoing NGS training to learn how to build NGS pipeline for whole exome sequencing analyses.

May you please guide me to find a suitable training program?

Best,

Kizuna

ADD COMMENTlink modified 6.2 years ago • written 6.2 years ago by Kizuna800
2

Tx David, however I am searching for trainings in WES.

ADD REPLYlink written 6.2 years ago by Kizuna800

Well, around 90% of the analyses are the same. But of course, the downstream analysis (everything after mapping) is a bit different. Perhaps we will offer WES workshops next time! :)

ADD REPLYlink written 6.2 years ago by David Langenberger9.5k

Thank you!

Do you have any information on-site training programs held in institutes like EBI? Broad institute? Sanger institute?

ADD REPLYlink modified 6 months ago by RamRS27k • written 6.2 years ago by Kizuna800
1

Sorry, I don't keep track of them but I am pretty sure that they offer variety of NGS training programs. If you search here on Biostars you may find such postings. For example, one such post is A: Upcoming Ngs Data Analysis Workshops 2014

Post it as a separate question if you need more help.

ADD REPLYlink modified 6 months ago by RamRS27k • written 6.2 years ago by Ashutosh Pandey12k

Sounds very interesting..

Many thanks, I will gladly download it and try it :)

I will let you know

kiz

ADD REPLYlink modified 6 months ago by RamRS27k • written 6.2 years ago by Kizuna800
5
1
gravatar for David Langenberger
6.2 years ago by
Deutschland
David Langenberger9.5k wrote:

Perhaps one of out trainings might be of interest to you!

Check out http://www.ecseq.com/training.html

ADD COMMENTlink written 6.2 years ago by David Langenberger9.5k
4
gravatar for alistairnward
6.2 years ago by
alistairnward210
United States
alistairnward210 wrote:

Hi Kizuna,

We, in Gabor Marths lab at Boston College, have an NGS tool and pipeline launcher that is simple to use and can perform a variety of different analyses with prebuilt pipelines. Customizing pipelines is straightforward and we are always available to help. Check out our site at http://gkno.me. The package is easy to download, install and run.

Good luck,
Alistair Ward

ADD COMMENTlink modified 6 months ago by RamRS27k • written 6.2 years ago by alistairnward210
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