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Tool: CAGm: a repository of germline microsatellite variations in the 1000 genomes project

microsatellites tool 1000 genomes project written 10 weeks ago by nkinney06 • 30

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874

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Ancestry Informative Markers

ancestry aims 1000 genomes project written 15 months ago by Inquisitive8995 • 40 • updated 6 months ago by Shicheng Guo • 7.3k

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740

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downloading bam files of phase 3 of 1000 genomes project

bam files 1000 genomes project written 9 months ago by Ana • 130 • updated 9 months ago by Pierre Lindenbaum ♦ 116k

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478

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Should I assume that the genotype of the 1000 Genomes project individuals in positions that are not in the vcf file, are homozygous for the reference allele?

vcf reference allele 1000 genomes project written 19 months ago by magda • 20

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1.3k

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Single VCF file with multiple populations from 1000 genome project

vcf snp calling 1000 genomes project written 3.4 years ago by JstRoRR • 60 • updated 3.3 years ago by Biostar ♦♦ 20

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Variant prevalence not listed

rs 1000 genomes project variant snp sequencing written 4.4 years ago by chloe.p.oconnell • 80 • updated 4.4 years ago by rbagnall • 1.3k

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Recent Replies

C: Did anyone manage to successfully run HLAScan and get results? by Kevin Blighe ♦ 35k
Did you try to contact the developer of HLAscan?
C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab by Kevin Blighe ♦ 35k
You're welcome. Yes, most likely there is a way. What are the columns in the output of Sleuth?
C: Iterative trimming using bowtie by ancient_learner • 610
Yeah. [GSE74912][1] [1]: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE74912
C: Iterative trimming using bowtie by ATpoint ♦ 12k
Still that is reasonable. Still, that mapping rate is poor and unusual for a good ATAC-seq librar...
C: Showing samples in or out of a range central tendencies by russhh • 4.1k
Sorry, I wasn't referring to you F. It was the advice from Santosh that I was questioning
C: BagFoot TF foot printing by Hughie • 10
Hi Ricardo, I have tried 3/4 days on this package and I'm now troubling at the final run() step, ...
C: Combining Normals in multi-region genome sequencing by nicholasyounger38 • 10
Thanks very much, I have asked around the bioinformaticians here also and joint genotyping seems ...
C: Iterative trimming using bowtie by ancient_learner • 610
Yes. Thought I would grep them out after alignment.
C: Iterative trimming using bowtie by ATpoint ♦ 12k
Does your reference genome contain chrM?
C: R for loop by jordi.planells • 10
Basically, what i want to do is to add column names to my files, in one piece of code. For a sing...
C: Fields with biggest demand for bioinformatics? by jrj.healey ♦ 10.0k
Well thats easy then :P ### Anything with AI or ML in the title
A: Percent abundance of two separate species in transcriptome data by kristoffer.vittingseerup • 1.2k
Unless you have a "pure" refrence sample this is not feasible (you can combine two expression pro...

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