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<prev • 31 results • page 1 of 2 • next >
4
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144
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cellranger count help
10x rna-seq written 18 days ago by jsl • 20
6
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1
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112
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5 follow
1
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Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-seq sequencing run
10x single cell rna-seq sequencing written 5 weeks ago by camerond • 150
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0
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136
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0
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How to analyze this kind format of 10x single cell RNA-seq data?
10x single-cell rna-seq assembly written 7 weeks ago by zhoujie • 0 • updated 7 weeks ago by Arup Ghosh ♦ 2.3k
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93
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Hi-c Phase block Viewer
10x hi-c phase block snp haploview written 3 months ago by devarora • 120
0
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0
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125
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0
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How to find percentage of a gene (eg.Ppbp) for condition A and condition B from 10X Single Cell RNAseq?
rnaseq 10x single cell cellranger written 3 months ago by bioinforesearchquestions • 280 • updated 3 months ago by Biostar ♦♦ 20
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1
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221
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1
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RaceID3 using 10x datasets
10x raceid single cell written 3 months ago by Seigfried • 70
2
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1
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324
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1
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Error when running cellranger mkref single nuclei RNA-Seq
10x single-cell rna-seq rna-seq written 3 months ago by robert.yzc • 0 • updated 3 months ago by genomax ♦ 80k
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1
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124
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1
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merging smaller contigs to longer
10x genome reference longranger written 6 months ago by hothriananya • 60 • updated 4 months ago by zebratown • 0
0
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0
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151
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0
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Power Analysis 10x - Minimum number cells per cluster
10x scrna written 4 months ago by VHahaut • 1.1k
9
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2
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4.5k
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11 follow
2
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10x Supernova de novo assembly
10x assembly written 3.3 years ago by igor ♦ 9.9k • updated 4 months ago by samnioue • 0
0
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0
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139
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0
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Sub_Population using 10X Loupe browser
10x written 5 months ago by alpha09 • 10 • updated 5 months ago by genomax ♦ 80k
0
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0
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481
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0
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What does a 'normal' FASTQC report look like for scRNA-seq data?
scrna-seq 10x fastq rna-seq fastqc written 8 months ago by MutationalMeltdown • 50
0
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0
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344
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scRNAseq T cell receptor clonotype analysis - some cells missing alpha or beta chain sequence? Need advice
10x thymocyte tcr clonotype t cell receptor written 9 months ago by MLXOOO • 10 • updated 8 months ago by Biostar ♦♦ 20
0
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700
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5 follow
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How to align 10X R1 and R2 fastqs?
10x pairend fastq alignment rna-seq written 8 months ago by sambunga094 • 0 • updated 8 months ago by Zhixue • 10
4
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387
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1
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It is possible to improve my assembly?
10x assembly supernova arks linked reads written 10 months ago by emile.cavalet_giorsa • 0 • updated 10 months ago by rando2 • 30
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275
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What's the best 3rd party software for doing analysis on 10X Genomics ATAC-seq data?
10x atac-seq written 10 months ago by BioinformaticsLad • 150 • updated 10 months ago by Devon Ryan ♦ 94k
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655
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GC content of 10x Genomics
10x gc content fastqc written 11 months ago by Assa Yeroslaviz • 1.3k
0
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0
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553
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0
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Waddington optimal transport for single-cell analysis
single-cell 10x wot rna-seq waddington written 12 months ago by Assa Yeroslaviz • 1.3k
1
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2
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2
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merging 10X genomics assemblies
10x written 20 months ago by rob234king • 580 • updated 12 months ago by harish • 270
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1
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How can you merge more than two 10x datasets in Seurat?
10x rna-seq scrnaseq written 12 months ago by DrAcula • 30 • updated 12 months ago by Charles Warden ♦ 7.6k
2
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5 follow
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high duplication levels in R1 reads of 10x Genomics samples
10x duplication rna-seq fastqc written 13 months ago by Assa Yeroslaviz • 1.3k • updated 13 months ago by i.sudbery ♦ 7.3k
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1.6k
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single cell analysis: normalize gene expression across samples
10x cell ranger single cell written 14 months ago by neta.zuckerman • 0
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1
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2.2k
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1
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10X scRNA-seq: Demultiplex into Samples with I1, R1, and R2 FASTQs
10x single-cell demultiplex rna-seq written 15 months ago by QVINTVS_FABIVS_MAXIMVS • 2.4k • updated 15 months ago by swbarnes2 ♦ 7.5k
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319
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10X data related to an AT rich genome
10x assembly at_rich genome written 17 months ago by Mostafa • 20
2
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0
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984
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6 follow
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Enhancing draft genome using 10X data
10x assembly draft_genome written 20 months ago by Mostafa • 20
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746
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Difference of 5' and 3' mRNA analysis
10x transcriptomics rna-seq written 21 months ago by heir_of_isildur88 • 20
6
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1
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2.2k
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1
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10X scRNA-seq sample sheet generation issue
10x fastq sequencing bcl written 24 months ago by nikitavlassenko • 50 • updated 23 months ago by genomax ♦ 80k
3
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1
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994
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1
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long-range technologies for genome scaffolding
10x hi-c scaffolding nanopore optical maps written 2.2 years ago by yurybukhman • 20 • updated 24 months ago by Damian Kao ♦ 15k
0
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1.2k
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What do these 10X Genomics sequencing metrics mean?
10x barcode 10x sequencing 10x genomics written 2.2 years ago by Chen • 970
2
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1
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754
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5 follow
1
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Why some entries from a same pair in the bam file have different TLEN?
genome 10x alignment bam sequencing written 2.7 years ago by verne91 • 20
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