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where to get PBMC (68k) labels?
single-cell 10x pbmc written 15 hours ago by mk • 190
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Error in reading MatrixMarket file format using Seurat Read10X
10x rna-seq seurat written 7 days ago by Nico • 0 • updated 2 days ago by Gordon Smyth • 2.3k
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Seurat: Assay to use for differential expression in an integrated data
10x single-cell seurat rna-seq written 16 days ago by rmf • 1.1k
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cellranger aggr troubleshooting
10x cellranger aggr multiomics rna-seq written 22 days ago by jbonarot • 0 • updated 20 days ago by Biostar ♦♦ 20
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8 follow
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cellranger count help
10x rna-seq written 11 months ago by jsl • 30 • updated 20 days ago by Max.Ka • 30
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166
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FIltering Seurat clusters
10x R rna-seq seurat written 8 weeks ago by roberts • 30 • updated 8 weeks ago by rpolicastro ♦ 4.0k
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127
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SRA scRNAseq data from 10x - cellranger count vs aggr
10x rna-seq written 8 weeks ago by essiggurke • 0
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188
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10x to cloupe
10x single-cell transcriptomics written 9 weeks ago by rmf • 1.1k • updated 9 weeks ago by swbarnes2 ♦ 9.6k
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125
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scRepertoire - combineTCR error
10x tcr clonotypes scrna seq R written 9 weeks ago by sudeshna • 0
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GLIPH version 2 question
10x R tcr gliph rna-seq written 9 weeks ago by roberts • 30
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167
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Pros/cons of cell hashing
10x hashtagging rna-seq written 9 weeks ago by bleven • 0 • updated 9 weeks ago by igor ♦ 12k
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Does 10X cv3 single-nuclei RNA-seq suitable for premRNA quantification to identify cell clusters and why
10x premrna rna-seq written 3 months ago by Mina • 0
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227
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scRNA: subset a small number of fastq reads
10x fastq scrna cellranger written 3 months ago by bsmith030465 • 170
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Demultiplexing/ separating multiple hashtags in multi-modal sc-seq
single-cell 10x tcrseq demultiplex cite-seq written 3 months ago by harithaa • 0
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215
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Published data sets using 10x Feature Barcoding?
10x single-cell feature barcoding 10x genomics written 4 months ago by mk • 190
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Why does this 10x scRNA-seq data set have one read instead of two reads?
10x scrna-seq reads sra written 4 months ago by pomodoro_sinensis • 0 • updated 4 months ago by GenoMax ♦ 96k
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229
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Runing a mix of samples using Hashtags in different 10x chip lanes
10x hashtag rna-seq written 4 months ago by sccastillo • 0
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320
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TCR analysis in Suerat
10x R tcr rna-seq seurat written 5 months ago by roberts • 30 • updated 5 months ago by jared.andrews07 ♦ 8.6k
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Two different library preps
10x R seurat rna-seq written 5 months ago by roberts • 30 • updated 5 months ago by swbarnes2 ♦ 9.6k
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480
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Analyzing TCR clonotype in Seurat
10x R tcr rna-seq seurat written 5 months ago by roberts • 30 • updated 5 months ago by jared.andrews07 ♦ 8.6k
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Tutorial: STARsolo config for 10x Chromium v1, v2, v3
10x tutorial starsolo chromium star written 5 months ago by Kevin Blighe ♦ 71k
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From 10x single cell data to a bulk analysis
singlecell 10x dna-seq copy number cellranger written 5 months ago by noshadho • 10
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GC content of 10x Genomics
10x gc content fastqc written 23 months ago by Assa Yeroslaviz • 1.4k • updated 6 months ago by Eugene A • 90
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Inputs for CellRanger pipeline/Loupe
10x written 7 months ago by ww22runner • 0 • updated 7 months ago by swbarnes2 ♦ 9.6k
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Filtering out mouse cells based on mouse/human genes ratio
10x rna-seq scrnaseq cellranger written 7 months ago by biostarukha • 10
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10x Cell Ranger 'count' function error:
10x cellranger single cell written 8 months ago by miyagi • 0
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260
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Programmatically kicking off cellranger based on fastq folder format
10x scrna-seq fastq cellranger written 8 months ago by Vincent Laufer • 1.1k
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345
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Should I aggregate expression matrices from cell hashed and non-hashed libraries with cellranger?
scrna-seq 10x cellranger rna-seq written 10 months ago by massonix • 20
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Tutorials: Trajectory analysis using Velocity
singlecell 10x velocity trajectory written 10 months ago by bioinforesearchquestions • 280
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419
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5 follow
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Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-seq sequencing run
10x single cell rna-seq sequencing written 12 months ago by camerond • 150
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