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0
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155
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5 follow
1
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How to align 10X R1 and R2 fastqs?
10x pairend fastq alignment rna-seq written 12 days ago by sambunga094 • 0 • updated 12 days ago by Zhixue • 10
0
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0
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83
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scRNAseq T cell receptor clonotype analysis - some cells missing alpha or beta chain sequence? Need advice
10x thymocyte tcr clonotype t cell receptor written 21 days ago by yonglin489 • 10
4
votes
1
answer
190
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1
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It is possible to improve my assembly?
10x assembly supernova arks linked reads written 7 weeks ago by emile.cavalet_giorsa • 0 • updated 6 weeks ago by rando2 • 20
1
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0
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129
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What's the best 3rd party software for doing analysis on 10X Genomics ATAC-seq data?
10x atac-seq written 9 weeks ago by BioinformaticsLad • 130 • updated 9 weeks ago by Devon Ryan ♦ 91k
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269
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GC content of 10x Genomics
10x gc content fastqc written 3 months ago by Assa Yeroslaviz • 1.2k
0
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0
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215
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0
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Waddington optimal transport for single-cell analysis
single-cell 10x wot rna-seq waddington written 3 months ago by Assa Yeroslaviz • 1.2k
1
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2
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531
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2
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merging 10X genomics assemblies
10x written 12 months ago by rob234king • 580 • updated 4 months ago by harish • 210
0
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1
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530
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1
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How can you merge more than two 10x datasets in Seurat?
10x rna-seq scrnaseq written 4 months ago by DrAcula • 0 • updated 4 months ago by Charles Warden ♦ 7.0k
2
votes
1
answer
318
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5 follow
1
answer
high duplication levels in R1 reads of 10x Genomics samples
10x duplication rna-seq fastqc written 4 months ago by Assa Yeroslaviz • 1.2k • updated 4 months ago by i.sudbery ♦ 5.0k
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0
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419
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0
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single cell analysis: normalize gene expression across samples
10x cell ranger single cell written 6 months ago by neta.zuckerman • 0
0
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1
answer
957
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1
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10X scRNA-seq: Demultiplex into Samples with I1, R1, and R2 FASTQs
10x single-cell demultiplex rna-seq written 6 months ago by QVINTVS_FABIVS_MAXIMVS • 2.3k • updated 6 months ago by swbarnes2 ♦ 6.0k
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0
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228
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0
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10X data related to an AT rich genome
10x assembly at_rich genome written 8 months ago by Mostafa • 10
1
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0
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560
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0
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Enhancing draft genome using 10X data
10x assembly draft_genome written 11 months ago by Mostafa • 10
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0
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303
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Difference of 5' and 3' mRNA analysis
10x transcriptomics rna-seq written 13 months ago by heir_of_isildur88 • 10
5
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1
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1.4k
views
1
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10X scRNA-seq sample sheet generation issue
10x fastq sequencing bcl written 15 months ago by nikitavlassenko • 20 • updated 15 months ago by genomax ♦ 70k
3
votes
1
answer
773
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1
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long-range technologies for genome scaffolding
10x hi-c scaffolding nanopore optical maps written 17 months ago by yurybukhman • 20 • updated 15 months ago by Damian Kao ♦ 15k
0
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958
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0
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What do these 10X Genomics sequencing metrics mean?
10x barcode 10x sequencing 10x genomics written 18 months ago by Chen • 890
2
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1
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616
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5 follow
1
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Why some entries from a same pair in the bam file have different TLEN?
genome 10x alignment bam sequencing written 2.0 years ago by verne91 • 10
8
votes
2
answers
3.9k
views
9 follow
2
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10x Supernova de novo assembly
10x assembly written 2.6 years ago by igor ♦ 8.0k • updated 2.1 years ago by from the mountains • 60
6
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0
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1.2k
views
0
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Need help with creating a Variant Caller for 10x data
10x variant snp sequencing written 3.0 years ago by richardsw • 0
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