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GC content of 10x Genomics
10x gc content fastqc written 16 months ago by Assa Yeroslaviz • 1.4k • updated 14 hours ago by Eugene A • 40
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2
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134
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Inputs for CellRanger pipeline/Loupe
10x written 18 days ago by ww22runner • 0 • updated 17 days ago by swbarnes2 ♦ 8.2k
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77
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Filtering out mouse cells based on mouse/human genes ratio
10x rna-seq scrnaseq cellranger written 4 weeks ago by biostarukha • 10
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1
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135
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1
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10x Cell Ranger 'count' function error:
10x cellranger single cell written 6 weeks ago by miyagi • 0
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97
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Programmatically kicking off cellranger based on fastq folder format
10x scrna-seq fastq cellranger written 8 weeks ago by Vincent Laufer • 1.1k
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129
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Should I aggregate expression matrices from cell hashed and non-hashed libraries with cellranger?
scrna-seq 10x cellranger rna-seq written 3 months ago by massonix • 20
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Tutorials: Trajectory analysis using Velocity
singlecell 10x velocity trajectory written 4 months ago by bioinforesearchquestions • 280
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3
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825
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5 follow
3
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cellranger count help
10x rna-seq written 5 months ago by jsl • 20
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5 follow
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Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-seq sequencing run
10x single cell rna-seq sequencing written 5 months ago by camerond • 150
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226
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How to analyze this kind format of 10x single cell RNA-seq data?
10x single-cell rna-seq assembly written 6 months ago by zhoujie • 0 • updated 6 months ago by Arup Ghosh ♦ 2.7k
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141
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Hi-c Phase block Viewer
10x hi-c phase block snp haploview written 7 months ago by devarora • 160
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218
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How to find percentage of a gene (eg.Ppbp) for condition A and condition B from 10X Single Cell RNAseq?
rnaseq 10x single cell cellranger written 8 months ago by bioinforesearchquestions • 280 • updated 7 months ago by Biostar ♦♦ 20
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RaceID3 using 10x datasets
10x raceid single cell written 7 months ago by Seigfried • 70
2
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1
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661
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Error when running cellranger mkref single nuclei RNA-Seq
10x single-cell rna-seq rna-seq written 7 months ago by robert.yzc • 0 • updated 7 months ago by genomax ♦ 87k
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164
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merging smaller contigs to longer
10x genome reference longranger written 10 months ago by hothriananya • 60 • updated 8 months ago by zebratown • 0
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233
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Power Analysis 10x - Minimum number cells per cluster
10x scrna written 9 months ago by VHahaut • 1.1k
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2
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11 follow
2
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10x Supernova de novo assembly
10x assembly written 3.7 years ago by igor ♦ 11k • updated 9 months ago by samnioue • 0
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203
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Sub_Population using 10X Loupe browser
10x written 10 months ago by alpha09 • 10 • updated 10 months ago by genomax ♦ 87k
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720
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What does a 'normal' FASTQC report look like for scRNA-seq data?
scrna-seq 10x fastq rna-seq fastqc written 12 months ago by MutationalMeltdown • 70
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scRNAseq T cell receptor clonotype analysis - some cells missing alpha or beta chain sequence? Need advice
10x thymocyte tcr clonotype t cell receptor written 13 months ago by MLXOOO • 10 • updated 12 months ago by Biostar ♦♦ 20
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How to align 10X R1 and R2 fastqs?
10x pairend fastq alignment rna-seq written 13 months ago by sambunga094 • 0 • updated 13 months ago by Zhixue • 10
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It is possible to improve my assembly?
10x assembly supernova arks linked reads written 14 months ago by emile.cavalet_giorsa • 0 • updated 14 months ago by rando2 • 30
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What's the best 3rd party software for doing analysis on 10X Genomics ATAC-seq data?
10x atac-seq written 15 months ago by BioinformaticsLad • 160 • updated 15 months ago by Devon Ryan ♦ 96k
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711
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Waddington optimal transport for single-cell analysis
single-cell 10x wot rna-seq waddington written 16 months ago by Assa Yeroslaviz • 1.4k
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2
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merging 10X genomics assemblies
10x written 2.1 years ago by rob234king • 600 • updated 17 months ago by harish • 290
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How can you merge more than two 10x datasets in Seurat?
10x rna-seq scrnaseq written 17 months ago by DrAcula • 40 • updated 17 months ago by Charles Warden ♦ 7.8k
2
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817
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high duplication levels in R1 reads of 10x Genomics samples
10x duplication rna-seq fastqc written 17 months ago by Assa Yeroslaviz • 1.4k • updated 17 months ago by i.sudbery ♦ 8.5k
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single cell analysis: normalize gene expression across samples
10x cell ranger single cell written 19 months ago by neta.zuckerman • 0
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10X scRNA-seq: Demultiplex into Samples with I1, R1, and R2 FASTQs
10x single-cell demultiplex rna-seq written 19 months ago by QVINTVS_FABIVS_MAXIMVS • 2.4k • updated 19 months ago by swbarnes2 ♦ 8.2k
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357
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10X data related to an AT rich genome
10x assembly at_rich genome written 21 months ago by Mostafa • 20
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