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Reference Data Set Download from 1000 genomes

1000genomes 1kg download written 8 months ago by karthick.n • 10

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1000 Genomes Project Reports Invalid Alleles for SNPs?

1kg dbsnp snp genotyping written 2.4 years ago by SpacemanSpiffo • 30 • updated 2.4 years ago by _r_am ♦ 32k

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Are WGS cohorts with large numbers of global participants (larger than 1kg) publicly available?

wgs 1kg 1000 genomes written 3.2 years ago by Vincent Laufer • 1.1k

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Looking for input on writing tool for analyzing haplotypes from 1KG

genome R 1kg haplotype snp written 3.6 years ago by dnygard • 0

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2.0k

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How to download SNP list of 1000 Genome

1000 genomes 1kg snp written 4.7 years ago by sinorenjianyi • 40

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Recent Replies

C: xml file conversion in R by _r_am ♦ 32k
Try `t(do.call(cbind, PatientClinicalList[1:10]))` etc until you can figure out where it breaks. ...
C: xml file conversion in R by Kira • 0
Extremely grateful for your reply. I've tried traceback() and debug(), still I could not locate t...
C: How to confirm if VCF file is normalized and Left aligned ? by _r_am ♦ 32k
Please don't add answers unless you're answering the top level question. Use Add Comment or Add R...
A: How to use python to rename files in a folder with known prefix, prefix are in e by dcrookston • 0
First, export your Excel file to comma-separated value (.csv) format. This will allow you to use...
A: WIG TO BIGWIG - UCSC SOFTWARE - ERROR IN "ITEM ENDS". <URGENT> by seidel ♦ 7.2k
It is essential that you know why you have elements outside the dimensions of your chromosomes. D...
C: Star index generation - 'std::bad_alloc' error by GenoMax ♦ 95k
Edit: I redacted your email address from the post above. Are you running this job outside a job ...
A: How to confirm if VCF file is normalized and Left aligned ? by vaibhash • 0
Thanks @_r_ram for your enlightening response, much appreciated ... tried installing the vt too...
A: Heatmaps by pheatmap by k.nirmalraman • 1.0k
Another interesting heatmap package is ComplexHeatmap https://jokergoo.github.io/ComplexHeatmap-r...
C: Heatmaps by pheatmap by ATpoint ♦ 44k
https://stackoverflow.com/questions/36852101/r-legend-title-or-units-when-using-pheatmap
C: Am I unnecessarily 'missing' a high number of true-positive DE genes? Or do I ju by Gordon Smyth • 2.1k
It means that 22% of all genes (22% of 14,000) are truly DE. Note that this is a global estimate...
C: xml file conversion in R by _r_am ♦ 32k
Go through it step by step. Examine each member of `PatientClinicalList` and see where the `cbind...
C: Step by step instructions to phase with Eagle? by atha.vouzas • 0
Did anyone figure out a solution to this error? ERROR: Failed to allocate 18446744073709551596 by...

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