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1000 Genomes Project Reports Invalid Alleles for SNPs?

1kg dbsnp snp genotyping written 4 months ago by SpacemanSpiffo • 10 • updated 4 months ago by RamRS ♦ 20k

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Are WGS cohorts with large numbers of global participants (larger than 1kg) publicly available?

wgs 1kg 1000 genomes written 14 months ago by Vincent Laufer • 1.0k

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Looking for input on writing tool for analyzing haplotypes from 1KG

genome R 1kg haplotype snp written 19 months ago by dnygard • 0

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How to download SNP list of 1000 Genome

1000 genomes 1kg snp written 2.7 years ago by sinorenjianyi • 40

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Recent Replies

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Hello, I guess that you mean you now have several genes, in fasta format. you wanna find motif fr...
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Great information. I'm learning a lot from here. Do share more. https://www.fita.in/placement-tra...
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I appreciate your kind comment, but the url you gave was out of service now, would you like to se...
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Try mapping to E.coli first, check the coverage (they may share some genes), and assemble with un...
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It’s plink 2.0, not 1.9, that has all the major optimizations for —linear. Using v2.0 for this s...
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The desired output looks like it is just sorted sorted by sequence name. Shouldn't be `seqkit sor...
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I found out 14-mers on my 48GB RAM PC, you can easily extend them to 16-mers. https://www.biosta...
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Thank you very much! I have read this document but according to it, the --missing-phenotype will ...
A: Missing data in covariate file in PLINK by karl.stamm ♦ 3.4k
PLINK v1.9 has a parameter --missing-phenotype which lets you assign a number other than -9 as th...
C: TRUNCATED FILE CREATION when samtools is used to produce both_ends_unmapped.bam by priya120195 • 0
I tried with all my samples, but still I am struggling with same issue. All the commands are runn...
C: GenomicDataCommons request timeouts cases() %>% ... %>% results_all() by mk • 50
Ok, I threw up a link on Bioconductor forum. In case the answer gets posted there I'll update th...
C: Shotgun metagenomics: Why bother with de novo assembly? by BioinformaticsBro • 0
All valid points! I forgot about the extra resolution that can be gained from contigs vs. reads a...

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