2020+ Posts

C: Pipeline for creating a SNP dataset from scratch by anikcropscience • 30
It is an haploid microorganism (Plant fungi)
C: Extract RPKM values from Diffbind by francesca3 • 20
Thank you Rory. I have another question. When I retrieve these RPKM values I obtain very low numb...
C: How to get the consensus sequence and the possible sequences from multiple seque by Joe ♦ 17k
OK, but what do you want to do with the subset which have more than 2? This will radically change...
C: Bioinformatics computer upgrade help by Joe ♦ 17k
Yes, using XTerm you can still run GUI tools over a remote connection, albeit with a bit more lat...
C: Bioinformatics computer upgrade help by Joe ♦ 17k
This is going to be an exceedingly expensive upgrade. Threadripper CPUs alone are several thousan...
C: Missing pseudogenes in annotation report by ugurcabuk • 120
Hi Seraph, I think, you can send an e-mail to NCBI submission portal (http://genomes@ncbi.nlm.nih...
C: Bioinformatics computer upgrade help by Joe ♦ 17k
Any editor is going to struggle with large files. This is why we say you need to change the way y...
C: ballgown and pData by Asad Prodhan • 0
Hi Morris, I am using HISAT2 - StringTie -Ballgown pipeline. I was wondering if you could please ...
C: Avoid repetition in script by Alex Nesmelov • 110
left_join(ch1_SCPG, ., by=c("CHR"="CHR")) actually performs right join - to make it clear, I'd ra...
C: ACMG 59 genes by lakhujanivijay ♦ 5.1k
see [this][1] article [1]: https://www.nature.com/articles/s41436-019-0502-5
C: how to extract intron coordinates (in bed) from bam by Devon Ryan ♦ 95k
Then you can't know which strand the transcripts are from.
C: Strange Mean-Variance plot after Voom Normalization (RNAseq) by Fabio Marroni • 2.5k
Probably this isn't the problem, but the variance is (standard deviation)^2 while you are plottin...

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