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How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
Comment: Find ASVs for Non-Microbial Data
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Answer: samtools markdup in Rsamtools
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Answer: samtools markdup in Rsamtools
A: Filter Bacterial sequences from Metagenomics
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Answer: Can Singularity be installed on a single-node server or does it have to be HPC?
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Singularity is designed to be lightweight and efficient, making it suitable for deployment on both single-node servers and HPC environments.
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Genetics
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I donot have DNAseq data. HAve RNAseq fastq file.
Comment: RNA Editing data from RNA-seq
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Thank you for you reply. I have fastq file(RNAseq data). As I want to use RNAItool which required input files as BAM.I have to conver fastq…
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You can take the man of 10 values for each of those quantities except for ROC curve, but they won't necessarily be accurate. They will be c…
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Did the error message mention --mind? And how many individuals are in your data set? According to the [manual][1] you should set --mind to …
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I've read this. Clearly I'm looking for a straightforward step-by-step clarification of the processing. Starting from my data that I briefl…
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To be honest, i wanted to know only **which type of change**. since you mentioned about the specific exons, if it is possible i wanted to k…
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> if anyone could provide a straightforward workflow https://www.frontiersin.org/articles/10.3389/fcell.2022.981859/full "scATACpipe: A …
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This would also explain the performance difference - the code is running on multiple cores on the Apple, but only a single core on Windows.
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You usually need DNA sequencing data as well as RNAseq data to identify RNA editing events.
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What do you mean be "most frequent alternative splicing event"? Do you mean which type of change (cassette exon, alternative 5' splice-site…
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I don't see genes in this location on the standard sheep genome either. The image you've included above doesn't show the gene annotation. B…
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This isn't a matter of "know[ing] the inner workings of PLINK2". It's about clear communication and debugging practice. You never posted …
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