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Showing: 3d structure • reset

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Protein 3D structure, Leucine Zipper

3d structure leucine zipper protein written 10 months ago by anshulmbi • 0

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Could someone link me an isolated peptidyl-transferase center 3d structure? Couldn't find on databases

3d structure ribosome written 22 months ago by daniel.ancord • 0 • updated 22 months ago by natasha.sernova • 2.9k

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Tool: Aquaria: simplifying discovery and insight from protein structures

3d structure aquaria sequence tool snp written 3.4 years ago by Aquaria team • 90

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Recent Replies

A: Merging public vcf files: <NON_REF> in ALT by jimkozubek • 0
I will answer my own question: I started with single sample VCF files and some had lines with 0/...
C: Please suggest an appropriate genome-guided transcriptome assembler by Kevin Blighe ♦ 21k
Sure thing! Here is the publication in Nature Methods: Transcript-level expression analysis of RN...
C: Please suggest an appropriate genome-guided transcriptome assembler by Kevin Blighe ♦ 21k
You should create HISAT2-specific indices. Please read here: https://ccb.jhu.edu/software/hisat2/...
C: Please suggest an appropriate genome-guided transcriptome assembler by Farbod • 3.1k
Could you kindly suggest me some source or paper for appropriate scripts of HISAT2 usage? I mean ...
C: Please suggest an appropriate genome-guided transcriptome assembler by Farbod • 3.1k
Thank you. So, prior to using HISAT2, I should make an index reference of my species of interest ...
C: Please suggest an appropriate genome-guided transcriptome assembler by Kevin Blighe ♦ 21k
HISAT2 would be okay to use. It would be interesting to use the new reference genome as a guide (...
A: Mapping and annotating DNA binding regions from ChIP-Seq to nearby gene by Kevin Blighe ♦ 21k
You can just use *GenomicRanges* with your peaks BED file and your annotation GFF (after they hav...
C: Please suggest an appropriate genome-guided transcriptome assembler by Farbod • 3.1k
Dear @Kevin, Hi. I have the RNA-seq data of a fish (3 cond1 and 3 cond2 as biological replicate) ...
C: How to apply GenVisR Bioconductor package on VCF file by ahorn720 • 0
Hey Krithika.gu, How did you convert the VCF to MAF? I've been trying to do it with vcf2maf.pl wi...
A: Inferring genotype based on RNA sequnces by Kevin Blighe ♦ 21k
The argument for variant calling from RNA-seq data usually surrounds the fact that it can be cost...
C: STREAM for identifying cell type by WouterDeCoster ♦ 29k
I edited your title to make it more explicitly about what you are asking.
C: minus integer copy number when using --purity for cnvkit by Kevin Blighe ♦ 21k
You can output the absolute copy number with the call command. In this case, it looks like the ...

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