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Computational pipeline to interpret genetic variation from protein structure data

genetic variation 3d structure interpretation written 9 months ago by Shicheng Guo • 8.4k

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686

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Protein 3D structure, Leucine Zipper

3d structure leucine zipper protein written 3.2 years ago by anshulmbi • 30

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712

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Could someone link me an isolated peptidyl-transferase center 3d structure? Couldn't find on databases

3d structure ribosome written 4.2 years ago by daniel.ancord • 0 • updated 4.2 years ago by natasha.sernova • 3.7k

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3.4k

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Tool: Aquaria: simplifying discovery and insight from protein structures

3d structure aquaria sequence tool snp written 5.7 years ago by Aquaria team • 90

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Recent Replies

A: Inside a .sam file, how do I know which read maps where to which scaffold in the by colindaven • 2.4k
Looks like this one : NODE_1_length_3415511_cov_137.721502 Check the SAM spec for further detail...
C: BWA alignment generating errors by Pierre Lindenbaum ♦ 131k
> Command terminated by signal 9 you bwa command was killed by the server. https://stackoverf...
C: Read DNA sequence from FASTA rising a subclass? by Ionic_Bond • 0
That makes sense and helped me a lot thank you very much :)
C: Read DNA sequence from FASTA rising a subclass? by Ionic_Bond • 0
That was very helpful thank you so much.
C: Volcano plot with highlighted significantly up/down regulated genes with specifi by camillab. • 30
But is it not more confusing if I post it in both sites?
A: Filter gmap GFF3 output by identity by Juke34 • 4.8k
If the identity is stored in an attribute of the 9th column you can filter using agat_sp_filter_f...
C: BWA alignment generating errors by ATpoint ♦ 40k
The `samtools` error is a consequence of a `bwa` problem. Did you check memory usage? Do you real...
C: Can I extract annotation file from genbank format or modify on current gff file? by Fatima • 740
You can try "Fraggenescan" to do the gene prediction in the modified sequence, and then combine t...
C: Can I extract annotation file from genbank format or modify on current gff file? by Ripacoco • 0
Thanks for the suggestion, I'll try that!
C: Can I extract annotation file from genbank format or modify on current gff file? by Ripacoco • 0
Thanks, Fatima. The thing is that since I insert a small piece of sequence into E.coli MG1655, I ...
A: Online alignment for large fasta files by hugo.avila • 160
Hi, try [CSAR web][1]. Just upload a reference and you 4000 genomic sequences and you will get an...
C: Can I extract annotation file from genbank format or modify on current gff file? by hugo.avila • 160
Hi, try to annotate your genome (edited fasta file) with [prokka][1]. I know that it must more ea...

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