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Forum: SNP annotation and Candidate gene identification using different but closely related species?
assembly genome forum snp sequencing gene written 4 hours ago by vetriventhan • 0
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Bacterial Type strain and Proxytype strain in NCBI
genome assembly sequence written 1 day ago by VineethVenumadhavan • 20
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2
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Between mm10.p4 and mm10, why the total sequence length different?
genome assembly mm10 reference mouse written 20 months ago by kenneth.jh.han • 0 • updated 10 hours ago by Biostar ♦♦ 20
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Should RNA-seq data be assembled before analyzing?
assembly rna-seq written 18 hours ago by nancydong20 • 60
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Annotate .bed file with gene names
genome assembly next-gen written 2.7 years ago by stevenlang123 • 110 • updated 1 day ago by ilopez.7 • 0
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Does Jellyfish support zipped fastq sequences?
genome assembly kmer written 2 days ago by comma1993 • 0 • updated 1 day ago by genomax ♦ 30k
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5 follow
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Need help : cut the fasta sequences from a specific region
assembly written 2 days ago by Varshney • 0
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which tool is used for separating forward and reverse from paired end fastq
assembly written 2 days ago by ranjini.shakthi • 0
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109
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Protein PDB ID
genome assembly sequencing blast gene written 2 days ago by me.yogeshred • 0 • updated 2 days ago by WouterDeCoster ♦ 20k
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1
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minia seg fault (core dump) after inability to unlink mphf temp files?
assembly minia written 3 months ago by mmelendrez • 10 • updated 3 days ago by malaya77 • 0
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Functional annotation pipeline
assembly sequence rna-seq blast written 8 weeks ago by sbchua.1990 • 10 • updated 3 days ago by colindaven • 250
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120
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if i do mistake in library type parameter of trinity assembly, do i need to reassemble it again?
assembly rna-seq written 7 days ago by biologo • 10 • updated 3 days ago by colindaven • 250
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135
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Scaffolding with pacbio reads
assembly contig scaffold pacbio written 8 days ago by guillaume.rbt • 290 • updated 6 days ago by shwethacm • 110
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Read Merging Options
assembly sequence written 7 days ago by fire_water • 50
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dedupe.sh from bbmap excludes contigs with insufficient overlap
assembly contig bbmap dedupe written 8 days ago by cristian • 50
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Python error when using MEGAHIT assembler
python megahit assembly written 9 days ago by sratestimon • 0
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140
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7 follow
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Assembling PacBio reads using a reference genome
assembly resequencing reference pacbio written 9 days ago by celeste • 20 • updated 9 days ago by Istvan Albert ♦♦ 73k
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1
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145
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5 follow
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number of threads for cufflinks transcript assembly
assembly rna-seq written 10 days ago by hassan giahi • 0 • updated 10 days ago by WouterDeCoster ♦ 20k
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106
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scaffolding with n= and N=
assembly abyss written 11 days ago by jdoyle30724 • 0 • updated 10 days ago by benv • 500
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3
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179
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Diploid vs Haploid calls
assembly alignment sequencing written 13 days ago by Ghani • 0 • updated 13 days ago by Brian Bushnell ♦ 13k
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126
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1
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Python error for variant call
assembly written 13 days ago by Cindy • 0 • updated 13 days ago by Istvan Albert ♦♦ 73k
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Bionformatics training courses and workshops in Europa?
genome assembly sequencing rna-seq R written 14 days ago by norman.mayer • 10
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140
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How to draw the chromosome specific coverage plot using GFF3 file
genome R assembly written 6 weeks ago by ajaybioinfo • 50 • updated 14 days ago by bernatgel • 710
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126
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circos plot to compare genomes plot
assembly written 15 days ago by Ric • 120
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127
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How to assemble complex soil metagenome datasets?
assembly metagenomics soil written 15 days ago by Lina F • 80 • updated 15 days ago by jrj.healey • 1.9k
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Assemble genomes over 100 Mb with the portal SMRT Analysis Software v4.0
assembly genome size pacbio smrt analysis software written 23 days ago by gabri • 10 • updated 15 days ago by shwethacm • 110
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Genome sequencing project opinions & help - heterozygous species
genome assembly next-gen sequencing written 22 days ago by lessismore • 20 • updated 15 days ago by shwethacm • 110
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RNA-seq analysis between 2 closely related strains of the same species
assembly next-gen rna-seq written 15 days ago by Tran Kim Ngan • 0 • updated 15 days ago by kristoffer.vittingseerup • 180
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6 follow
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Recognizing an organism which is combination of other organisms
assembly rna-seq blast written 16 days ago by dark_rider_2010 • 10
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merge PE reads for Transcript De-Novo Assembly ??
de-novo assembly transcript rna-seq written 2.3 years ago by Paul • 620 • updated 18 days ago by Biostar ♦♦ 20
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