Recent Votes
Recent Locations •
All
Israel, just now
United Kingdom, 1 minute ago
France, 2 minutes ago
United States, 2 minutes ago
VIB, Ghent, Belgium, 2 minutes ago
Cyprus, 3 minutes ago
USA, 4 minutes ago
Recent Awards •
All
Popular Question to
Vic
▴
50
Popular Question to
Chironex
▴
30
Popular Question to
Mainul
▴
10
Popular Question to
kofuji
▴
10
Teacher to
Devon Ryan
102k
Scholar to
quentin54520
▴
90
Recent Replies
Answer: ESTIMATION OF LEVEL OF CYTOKINES FROM BULK RNAseq
by
Rafael Soler
▴
430
Hello Leticia,
I don't know much about Cybersort analysis, but you can check genes related to `cytokine activity` GO Term http://www.inf…
Comment: Supplementary alignments in BAM-file
by
mokbel73
•
0
![enter image description here][1]
[1]: /media/images/d8927d0a-865b-44d3-82de-b277c7b6
Comment: resolving specific clusters from data (spectral clustering)
by
benformatics
★
2.9k
I like your suggestions, I will try that. It's gene coverage at specific coordinates.
Comment: enhanced volcano label point
by
cpad0112
21k
How about this?:
ggplot(data=dat, aes(x=x, y=y, color=label)) +
geom_point(size=10)+
geom_point(data=dat[dat$label=="B",]…
Comment: resolving specific clusters from data (spectral clustering)
by
ATpoint
62k
What is x and y? What kind of data is that? Did you try a graph-based clustering based on these two dimensions? So building a KNN/SNN graph…
Comment: How to split a long protein sequence in small sequences with same header?
by
GenoMax
117k
Tagging: https://www.biostars.org/u/4664/
https://www.biostars.org/u/4664/ : It appears that `seqkit` is not working for this task. Can yo…
Comment: How to split a long protein sequence in small sequences with same header?
by
FelipeMSD
•
0
Thank you very much JC! Just used that and it worked very well :)
Answer: The nightmare of coordinate systems
by
tomas4482
▴
170
https://tidyomics.com/blog/2018/12/09/2018-12-09-the-devil-0-and-1-coordinate-system-in-genomics/
https://genome-blog.soe.ucsc.edu/blog/20…
Answer: How to split a long protein sequence in small sequences with same header?
by
JC
13k
Perl code:
#!/usr/bin/perl
use strict;
use warnings;
my $word_size = 6;
$/="\n>"; # read sequ…
Comment: How to split a long protein sequence in small sequences with same header?
by
FelipeMSD
•
0
To be honest, Joe, I also tried **seqkit split2 -l** in the past and, just as Hugo was saying, by using this we do not get the result we wa…
Comment: enhanced volcano label point
by
ATpoint
62k
They want the blue dot not being overlapped/hidden by grey. @OP, since it's ggplot the order how the dots are plotted is determined simply …
Comment: enhanced volcano label point
by
Kevin Blighe
82k
Hi, it is not clear what you want to do? Have you not already generated what you wanted to do?
Comment: False heterozygosity at chromosome X for male sample in Exome Sequencing
by
Pari
•
0
I too got heterozygous variants on X-chromosome in males cells from my WGS DNA data variant calling with GATK4.The reason is these variants…
Comment: How to split a long protein sequence in small sequences with same header?
by
Joe
20k
He is using the wrong tool. His command is `fasta_formatter ...`, whereas the command Genomax mentioned is using `seqkit split2 -l ...`, so…
Traffic: 2288 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6