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Breakdancer : bam2cfg.pl doesn't work with merged bam
breakdancer written 5 months ago by Roxane Boyer • 560
1
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1
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284
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1
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Any techniques faster than Breakdancer?
sv breakdancer structural variant dna written 6 months ago by boyu93 • 0 • updated 5 months ago by Eric T. • 2.2k
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1
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322
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1
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CNV detection using beakdancer and SVDetect
svdetect breakdancer cnv written 6 months ago by kk.mahsa • 60 • updated 6 months ago by d-cameron • 1.7k
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321
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Breakdancer : samtools pid process 7845 is still there... invoking kill -9 on 7845 ... Closing samtools process : 7845
7845 breakdancer samtools kill written 9 months ago by johnnytam100 • 40
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800
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Breakdancer : Can't locate Statistics/Descriptive.pm in @INC while trying to run bam2cfg.pl
perl breakdancer bam2cfg.pl inc written 9 months ago by johnnytam100 • 40 • updated 9 months ago by amy.bashir • 70
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Problem using Breakdancer
breakdancer written 2.2 years ago by jamessemaj712 • 10 • updated 11 months ago by Biostar ♦♦ 20
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Breakdancer parameter -t labels non-CTX events as CTX
breakdancer translocation written 12 months ago by athena (˚▽˚) • 0
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459
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odd size of breakdancer INV
structural variants inv breakdancer inversions written 15 months ago by kirill1984 • 0
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Bam2Cfg Parameter Description
breakdancer written 5.3 years ago by ryan.hartmaier • 0 • updated 16 months ago by lionair • 10
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Forum: Questions about the mechanism behind breakdancer-max
structure variant forum breakdancer written 19 months ago by Darren Lin • 0
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Breakdancer Bam2Cfg.Pl , Coefficient Of Variation Is Too Large, Not Excluding Outliers?
breakdancer written 4.8 years ago by William • 4.2k • updated 24 months ago by Biostar ♦♦ 20
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2
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all the SV type of breakdancer output are ITX is that correct?
structural variants sv detection breakdancer written 2.6 years ago by jmche • 0 • updated 2.3 years ago by Biostar ♦♦ 20
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Question about Breakdancer output
breakdancer written 2.4 years ago by hxlei613 • 80
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3
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3
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Questions about BreakDancer
ngs breakdancer cnv written 2.5 years ago by hxlei613 • 80 • updated 2.5 years ago by trausch • 1.0k
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3
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1.7k
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3
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Problem to install Breakdancer on Mac OS X
mac os x breakdancer written 3.0 years ago by fbesnard • 40 • updated 2.6 years ago by Biostar ♦♦ 20
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breakdancer - cfg creation and chi square problem
rnaseq breakdancer written 2.6 years ago by TriS • 3.4k
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Build Breakdancer Fails
breakdancer written 4.4 years ago by m.kooijman • 0 • updated 2.8 years ago by Biostar ♦♦ 20
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Understanding flags from output of bam2cfg.pl - BreakDancer
flag breakdancer bam2cfg written 2.9 years ago by Vladimir Bajić • 0 • updated 2.9 years ago by ernfrid • 190
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filter BreakDancer output
sv variant breakdancer structural written 3.1 years ago by biostud • 0
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1
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Breakdancer: bam2cfg.pl error
breakdancer written 3.2 years ago by Peter • 0 • updated 3.2 years ago by ernfrid • 190
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1
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1
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BreakDancer make error
breakdancer written 3.2 years ago by Peter • 0
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1
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1
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Breakdancer output error
matepair ngs breakdancer strcutural variations written 3.4 years ago by shumaila.sayyab • 0 • updated 3.4 years ago by ernfrid • 190
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1
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BreakDancer is giving blank output!
breakdancer rna-seq written 3.6 years ago by anshuman.mit • 0 • updated 3.5 years ago by ernfrid • 380
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3
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The importance of LB field in @RG tag for BreakDancer analysis
wgs lb @rg breakdancer written 3.7 years ago by Nicola Casiraghi • 430 • updated 3.7 years ago by Devon Ryan ♦ 80k
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Breakdancer Somatic Sv Input Order Of Tumor And Normal Bam Files
sv breakdancer written 5.7 years ago by g.skullcap • 0 • updated 3.7 years ago by Biostar ♦♦ 20
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1
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5 follow
1
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Breakdancer Max Kahan Error:0
breakdancer error written 4.2 years ago by Jack • 60 • updated 4.2 years ago by ernfrid • 380
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1
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Can Breakdancer Be Used On Bwa Mem Alignments?
sv breakdancer bwa written 4.2 years ago by zhangleisdau • 0 • updated 4.2 years ago by Jack • 60
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Tools For Structural Variants
breakdancer structural written 4.2 years ago by Kasthuri • 220 • updated 4.2 years ago by mdm-two • 210
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Breakdancer Bam2Cfg.Pl Does Not Produce Any Output For Treated/Tumor File
breakdancer written 4.4 years ago by skm770 • 150
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Multiple Issues With 1.4.4 Breakdancer Compile
breakdancer error written 4.4 years ago by dieabonnements • 0 • updated 4.4 years ago by ernfrid • 380
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