Showing: cnvkitreset
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How to merge CNV of multiple samples from CNVkit
cnvkit cnv written 5 weeks ago by cc0 • updated 5 weeks ago by Eric T.1.9k
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cnvkit segmetrics on multiple files
cnvkit cnv written 10 weeks ago by adoak10
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Is cnvkit coverage output split into non-overlapping segments?
exome cnvkit coverage written 12 weeks ago by fbrundu260 • updated 11 weeks ago by Eric T.1.9k
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How to assess confidence of cnvkit calls
cnvkit cnv written 12 weeks ago by phusion0 • updated 12 weeks ago by Kevin Blighe11k
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CNVkit calling strategies with matched-normal tumor
cnvkit whole-exome copy-number-variation written 3 months ago by fbrundu260 • updated 3 months ago by Kevin Blighe11k
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How to import the output of CNVkit into GISTIC2.0 ?
cnvkit gistic2.0 written 4 months ago by Tonny20 • updated 4 months ago by Eric T.1.9k
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CNVkit for germline samples
cnvkit next-gen targetsequencing germline written 4 months ago by merella.stefania0 • updated 4 months ago by Eric T.1.9k
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Error due to annotation file while running target module from CNVkit tool
exome cnvkit cnv sequencing written 4 months ago by arta180 • updated 4 months ago by Eric T.1.9k
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How to get the range of LOH?
cnvkit written 5 months ago by Tonny20 • updated 5 months ago by Eric T.1.9k
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Understanding Weight column in .cns files in cnvkit
cnvkit weight call written 5 months ago by ingrid.schulman0 • updated 5 months ago by Eric T.1.9k
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Problems using cnvkit for ctDNA targeted sequencing
cnvkit ctdna results written 5 months ago by ingrid.schulman0 • updated 5 months ago by Eric T.1.9k
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Recurrent Segmentation Errors
cnvkit written 7 months ago by AndyW0 • updated 6 months ago by Eric T.1.9k
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"Shifted" copy number ratios coming from cnvkit?
cnvkit somatic copy number written 7 months ago by gil.hornung50 • updated 6 months ago by Eric T.1.9k
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Question about run cnvkit on DNAnexus
cnvkit snp dnanexus written 7 months ago by qyang20 • updated 6 months ago by Eric T.1.9k
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CNV detection of single cell genome sequencing
cnvkit single cell genome sequencing cnv written 6 months ago by Tonny20 • updated 6 months ago by Eric T.1.9k
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Using THETA2 from CNVkit: what king of vcf do you need?
cnvkit tumor purity theta2 written 8 months ago by gil.hornung50 • updated 8 months ago by Eric T.1.9k
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CNVkit reference.cnn .cnr .cns log ratio
cnvkit cnv written 8 months ago by nina.naitatmane20 • updated 8 months ago by Eric T.1.9k
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How to add a legend to the heatmap?
cnvkit written 11 months ago by gil.hornung50
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Explications about call function of CNVkit
cnvkit call written 10 months ago by alice.choury50 • updated 10 months ago by Eric T.1.9k
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Error 1: NULL byte detected when trying to segment by PSCBS
exome cnvkit copy number segment written 10 months ago by nbay130 • updated 10 months ago by Eric T.1.9k
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CNVkit Segments vs Bins
exome cnvkit copy number segment written 10 months ago by Lauren20 • updated 10 months ago by Eric T.1.9k
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How is the "weight" calculated by CNVkit ?
cnvkit weight cnv written 10 months ago by alice.choury50 • updated 10 months ago by Eric T.1.9k
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How to export CNVkit results into PyClone?
cnvkit pyclone written 11 months ago by Jokhe70 • updated 11 months ago by Eric T.1.9k
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No call for exomes analysis
exome cnvkit written 11 months ago by alice.choury50 • updated 11 months ago by Eric T.1.9k
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Understanding coverage command
cnvkit written 11 months ago by deber19800 • updated 11 months ago by Eric T.1.9k
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Draw centromere on chromosome scatter plot
cnvkit plot cnv somatic written 12 months ago by alice.choury50 • updated 12 months ago by Eric T.1.9k
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CNVkit and Ion Torrent Data - Targeted Sequencing
ion torrent cnvkit cnv written 12 months ago by quantrum750 • updated 12 months ago by Eric T.1.9k
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