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MirianT_NCBI
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antonioggsousa
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Recent Replies
Comment: What means this Error when running a script in python??
by
Antonia
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0
Thank you Pierre! It wasn't clear for me at all lol Trully thank you
Answer: How to find promoter sequence of a gene?
by
sunyeping
▴
40
Thank you all for the help!
To do the ChIP-seq, how many cells are needed? I am working on antigen-specific T cells in tissues, usually,…
Comment: What means this Error when running a script in python??
by
Pierre Lindenbaum
153k
in "configs/config_main.yaml", line 29, column 1
could not find expected ':'
the message is quite clear to me : There is missing …
Answer: How to derive conditional maximum likelihood of the sum of independent negative
by
Dan
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90
I try to answer this question. Based on the Conditional Likelihood defined in https://rss.onlinelibrary.wiley.com/doi/epdf/10.1111/j.2517-6…
Answer: Informations for gene summary are missing in eutils api of NCBI?
by
MirianT_NCBI
▴
430
Hi,
You can use [NCBI Datasets][1] to retrieve gene information in JSON format. Using the gene id you used as an example, you can do thi…
Comment: How to find promoter sequence of a gene?
by
Trivas
▴
690
You can use the UCSC genome browser to get the the sequence of X bases upstream of a gene, then use tools in MEME-suite/JASPAR to look for …
Comment: How to find promoter sequence of a gene?
by
sunyeping
▴
40
Hello Jeo,
We found that Jun/fos are highly expressed in RNAseq. But to map reads mapping to regions upstream of genes, do you mean ATAC…
Comment: significant sequence identity?
by
xuechun
•
0
Is there have any papers to support these? Will you share some reporters?
Comment: Does it possible to know what are the adjacent genes up to 1000bp upstream and
by
Neel
▴
10
Thank You Sir for your reply.
Comment: Does it possible to know what are the adjacent genes up to 1000bp upstream and
by
Neel
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10
Thank you for your reply...
Comment: Differences between BioMart and Ensembl site
by
jpuntomarcos
▴
40
Thanks! I would suggest adding a small explanation/note, probably in the RefSeq column tooltip.
Comment: How to find promoter sequence of a gene?
by
Matthias Zepper
3.4k
Please describe in more detail what kind of input you have and which organism you are working with.
As a rule of thumb, everything betwee…
Comment: Differences between BioMart and Ensembl site
by
jpuntomarcos
▴
40
Yes, both are GRCh37.p13. [This is the link to the Biomart query][1] (you have to click Results), but I don't know how long the link will w…
Answer: Differences between BioMart and Ensembl site
by
Ben_Ensembl
★
2.2k
Hi jpuntomarcos,
The transcript table you have observed will only show you a single RefSeq transcript that is mapped per Ensembl transcr…
Comment: SRA Taxonomy Analysis - difference between tables and web
by
GenoMax
127k
There have always been differences in web based results from NCBI and what you may get from command line tools. In this case if the data co…
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