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Answer: How to derive conditional maximum likelihood of the sum of independent negative
Answer: How to derive conditional maximum likelihood of the sum of independent negative
Comment: TSV with multi-allelic sites to VCF
Comment: How to find promoter sequence of a gene?
Comment: What means this Error when running a script in python??
Comment: What means this Error when running a script in python??
Comment: Run nextflow sections sequentially
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Recent Replies
Comment: What means this Error when running a script in python??
by
Antonia
• 0
Thank you Pierre! It wasn't clear for me at all lol Trully thank you
Answer: How to find promoter sequence of a gene?
by
sunyeping
▴ 40
Thank you all for the help! To do the ChIP-seq, how many cells are needed? I am working on antigen-specific T cells in tissues, usually,…
Comment: What means this Error when running a script in python??
by
Pierre Lindenbaum
153k
in "configs/config_main.yaml", line 29, column 1 could not find expected ':' the message is quite clear to me : There is missing …
Answer: How to derive conditional maximum likelihood of the sum of independent negative
by
Dan
▴ 90
I try to answer this question. Based on the Conditional Likelihood defined in https://rss.onlinelibrary.wiley.com/doi/epdf/10.1111/j.2517-6…
Answer: Informations for gene summary are missing in eutils api of NCBI?
by
MirianT_NCBI
▴ 430
Hi, You can use [NCBI Datasets][1] to retrieve gene information in JSON format. Using the gene id you used as an example, you can do thi…
Comment: How to find promoter sequence of a gene?
by
Trivas
▴ 690
You can use the UCSC genome browser to get the the sequence of X bases upstream of a gene, then use tools in MEME-suite/JASPAR to look for …
Comment: How to find promoter sequence of a gene?
by
sunyeping
▴ 40
Hello Jeo, We found that Jun/fos are highly expressed in RNAseq. But to map reads mapping to regions upstream of genes, do you mean ATAC…
Comment: significant sequence identity?
by
xuechun
• 0
Is there have any papers to support these? Will you share some reporters?
Comment: Does it possible to know what are the adjacent genes up to 1000bp upstream and
by
Neel
▴ 10
Thank You Sir for your reply.
Comment: Does it possible to know what are the adjacent genes up to 1000bp upstream and
by
Neel
▴ 10
Thank you for your reply...
Comment: Differences between BioMart and Ensembl site
by
jpuntomarcos
▴ 40
Thanks! I would suggest adding a small explanation/note, probably in the RefSeq column tooltip.
Comment: How to find promoter sequence of a gene?
by
Matthias Zepper
3.4k
Please describe in more detail what kind of input you have and which organism you are working with. As a rule of thumb, everything betwee…
Comment: Differences between BioMart and Ensembl site
by
jpuntomarcos
▴ 40
Yes, both are GRCh37.p13. [This is the link to the Biomart query][1] (you have to click Results), but I don't know how long the link will w…
Answer: Differences between BioMart and Ensembl site
by
Ben_Ensembl
★ 2.2k
Hi jpuntomarcos, The transcript table you have observed will only show you a single RefSeq transcript that is mapped per Ensembl transcr…
Comment: SRA Taxonomy Analysis - difference between tables and web
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GenoMax
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There have always been differences in web based results from NCBI and what you may get from command line tools. In this case if the data co…
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