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Answer: ACMG assignment tools
Comment: Creating sample groups from a combination of genes for survival analysis
Comment: Creating sample groups from a combination of genes for survival analysis
Comment: How to create GO Bar Plot using data obtained from DAVID Functional Enrichment A
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Answer: Fastqc report analysis
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Recent Replies
Comment: Creating sample groups from a combination of genes for survival analysis
by
krushnach80
★ 1.1k
Hello @shred I have updated the information regarding your suggestion **Why not using quantiles? This gives you control over expression r…
Comment: ACMG assignment tools
by
Damianos P. Melidis
▴ 40
thanks for sharing! Is there a related biorxiv/publication to explain the implementation?
Comment: Creating sample groups from a combination of genes for survival analysis
by
krushnach80
★ 1.1k
Sorry for the `you would like to combine the low/high information coming from each gene into a single label to use for a patient` this inf…
Answer: SnpSift to annotate vcf with multiple databases
by
Zeng Jingyu
▴ 40
Hi whb, did you try annotate vcf using multiple databases? I'm now wondering how this could be done.
Comment: Mapping paired end reads with ngm and samtools, using prefixes and suffixes for
by
Human
• 0
hey does this look correct for you ? #!/bin/bash (...) #SBATCH --array=1-262 # Create list of sample names ls -1 *R1*fastq | xargs …
Comment: My fastq files(paired end) have different read number
by
colindaven
4.5k
Only 2.9% are properly paired. This is bad. You could tell use a bit more about your sequencing project and application and especially ref …
Comment: Creating sample groups from a combination of genes for survival analysis
by
Shred
★ 1.0k
It's not clear if you would like to combine the low/high information coming from each gene into a single label to use for a patient. Regard…
Comment: Error when using compareCluster from enichment
by
Basti
★ 1.4k
Could you show `str(gene_cluster)` ? It is difficult to help without seeing data
Answer: API REST ALINGMENT
by
Shred
★ 1.0k
Why reinventing the wheel if they kindly give [code][1] for using their REST API? From https://www.ebi.ac.uk/seqdb/confluence/display/JDSAT…
Answer: Why parametric linkage analysis on Merlin gives zero "0" LOD score?
by
Regina Phalange
• 0
Hello! Although it's a very old problem, I have encountered the same issue and it was difficult to find relevant answers through search. Fi…
Comment: Can someone help me with searching overlapping values between two files?
by
mxm189
• 0
I tried some stuff but it didnt work. I used ChatGPT, because I'm not good at this. I tried sorting of the two files first # Sort the inp…
Comment: Survival analysis with gene expression
by
krushnach80
★ 1.1k
Hello @kevinblighe I would like to get your help in [this][1] [1]: https://www.biostars.org/p/9558148/
Comment: activity of unloaded/unassembled Tn5
by
callumjcparr
• 0
![enter image description here][1] ![enter image description here][2] ![enter image description here][3] ![enter image description he…
Answer: How to implement this two-stage one-to-many workflow using WDL?
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Ruben
• 0
> Unfortunately, as far as I can tell, WDL provides no support for iterating over the contents of a directory. (I find this shocking. I con…
Answer: activity of unloaded/unassembled Tn5
by
callumjcparr
• 0
So I hope someone is still interested in this. We have taken to preparing recombinant Tn5 now as it's much cheaper than commercial suppli…
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