Showing: cnvkitreset
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Best variant caller for CNVkit
cnvkit written 11 months ago by milos-9110 • updated 11 months ago by Eric T.2.5k
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How to get the range of LOH?
cnvkit written 23 months ago by Tonny20 • updated 11 months ago by Shixiang40
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CNVkit: gene results not in output
cnvkit written 12 months ago by Lauren50 • updated 12 months ago by Eric T.2.5k
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minus integer copy number when using --purity for cnvkit
cnvkit written 13 months ago by xiaoqiaoliu0 • updated 13 months ago by Eric T.2.5k
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Using CNVkit to identify poor-quality normal samples
cnvkit written 13 months ago by Andy Lee10 • updated 13 months ago by Eric T.2.5k
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5 follow
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confused about how to run pipeline
cnvkit written 14 months ago by andrew.lamb0 • updated 14 months ago by toralmanvar770
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CNV details about the normal samples?
cnvkit cnv written 14 months ago by kvn95ss0 • updated 14 months ago by toralmanvar770
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Is there a way to use CNVkit without a reference from normal samples?
cnvkit sequence written 15 months ago by leandro.bispo.oliveira0 • updated 15 months ago by h.mon26k
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cnvkit example data
cnvkit bam cnv written 3.2 years ago by laxvid10 • updated 16 months ago by Biostar ♦♦ 20
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Regarding Cnvkit analysis
cnvkit written 17 months ago by DL20 • updated 17 months ago by Eric T.2.5k
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CNVkit - how many normal samples do I need for the pooled normal reference?
genome cnvkit written 17 months ago by ibphuangchen10 • updated 17 months ago by Eric T.2.5k
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CNVKit - Gene labels in 'diagram'
cnvkit cnv calling written 17 months ago by asjannu0 • updated 17 months ago by Eric T.2.5k
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tumor/normal WGS with CNVkit has many small segments with small copy number changes
cnvkit cnv wgs written 17 months ago by swheelan10 • updated 17 months ago by Eric T.2.5k
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CNVKIT import errors
cnvkit python cnv linux written 18 months ago by alons270 • updated 17 months ago by Eric T.2.5k
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How to merge CNV of multiple samples from CNVkit
cnvkit cnv written 19 months ago by cc10 • updated 19 months ago by Eric T.2.5k
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cnvkit segmetrics on multiple files
cnvkit cnv written 20 months ago by adoak10
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Is cnvkit coverage output split into non-overlapping segments?
exome cnvkit coverage written 21 months ago by fbrundu280 • updated 20 months ago by Eric T.2.5k
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How to assess confidence of cnvkit calls
cnvkit cnv written 21 months ago by phusion0 • updated 21 months ago by Kevin Blighe45k
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CNVkit calling strategies with matched-normal tumor
cnvkit whole-exome copy-number-variation written 21 months ago by fbrundu280 • updated 21 months ago by Kevin Blighe45k
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How to import the output of CNVkit into GISTIC2.0 ?
cnvkit gistic2.0 written 22 months ago by Tonny20 • updated 22 months ago by Eric T.2.5k
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CNVkit for germline samples
cnvkit next-gen targetsequencing germline written 22 months ago by merella.stefania10 • updated 22 months ago by Eric T.2.5k
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Error due to annotation file while running target module from CNVkit tool
exome cnvkit cnv sequencing written 22 months ago by arta540 • updated 22 months ago by Eric T.2.5k
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Understanding Weight column in .cns files in cnvkit
cnvkit weight call written 23 months ago by ingrid.schulman0 • updated 23 months ago by Eric T.2.5k
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Problems using cnvkit for ctDNA targeted sequencing
cnvkit ctdna results written 23 months ago by ingrid.schulman0 • updated 23 months ago by Eric T.2.5k
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Recurrent Segmentation Errors
cnvkit written 2.1 years ago by AndyW0 • updated 2.0 years ago by Eric T.2.5k
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"Shifted" copy number ratios coming from cnvkit?
cnvkit somatic copy number written 2.1 years ago by gil.hornung70 • updated 2.0 years ago by Eric T.2.5k
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Question about run cnvkit on DNAnexus
cnvkit snp dnanexus written 2.1 years ago by qyang20 • updated 2.0 years ago by Eric T.2.5k
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CNV detection of single cell genome sequencing
cnvkit single cell genome sequencing cnv written 2.0 years ago by Tonny20 • updated 2.0 years ago by Eric T.2.5k
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