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<prev • 1,877 results • page 1 of 63 • next >
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How to do differential peak analysis after scaling BAM files
chip-seq written 8 hours ago by xiaoyonf • 0
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267
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6 follow
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Tool: Introducing Skymap: Allelic read counts extracted from 250,000 human sequencing runs in Sequence Read Archive
chip-seq snp rna-seq tool written 8 days ago by btsui • 230
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How to set 1Kb resolution for Hi-C Juicebox Visualization
next-gen chip-seq written 18 hours ago by harikrishnanc903 • 0
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1
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why is there still duplication after extracting aligned read exactly 1 time?
duplicate alignment chip-seq samtools rna-seq written 22 hours ago by star • 60 • updated 22 hours ago by ATpoint ♦ 6.6k
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Choosing a ChIP-seq control for Encode pipeline?
encode chip-seq written 1 day ago by gewa • 0 • updated 1 day ago by Alex Reynolds ♦ 25k
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102
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annotate and analyse mutation from cosmic
assembly chip-seq mutation annotation written 3 days ago by sahhomaha • 0 • updated 1 day ago by manuel.belmadani • 50
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127
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Inconsistency between number of reads in Samtools flagstat and Macs2 total tags.
macs2 peak calling atac chip-seq written 4 days ago by ahmadammarmalik • 0 • updated 4 days ago by genomax ♦ 54k
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1
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377
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6 follow
1
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Bam to RPM Bedgraph Conversion
chip-seq written 4 months ago by virlana.shchuka • 0 • updated 5 days ago by h.mon ♦ 18k
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1
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Correlation of TF Binding with expression data
chip-seq rna-seq written 5 days ago by prakash • 240 • updated 5 days ago by venu ♦ 5.5k
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How to obtain the probe density from GEO
gene chip-seq written 6 days ago by deepamahm.iisc • 20 • updated 6 days ago by nfs.falsafi • 10
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Bowtie error: Could not locate a Bowtie index corresponding to basename
alignment chip-seq bowtie single-end hg19 written 6 days ago by cilgaiscan • 20 • updated 6 days ago by h.mon ♦ 18k
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HOMER works incorrectly with -sspe option for paired-end reads
homer chip-seq written 9 days ago by biostart • 240 • updated 6 days ago by Kevin Blighe ♦ 26k
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108
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Homer error (findMotifs.pl) : are you sure you chose the right length for motif finding?
homer chip-seq motifs written 7 days ago by salamandra • 160 • updated 7 days ago by Kevin Blighe ♦ 26k
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distanceToTSS different in HOMER and ChIPseeker annotation
chipseeker chip-seq written 7 days ago by sikhtechai • 30 • updated 7 days ago by jared.andrews07 • 880
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8 follow
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Job: Seeking private tutor to learn RNA/ChIP-Seq data analysis
chip-seq job rna-seq written 15 months ago by MANISH RANJAN • 40 • updated 7 days ago by shahnazhshefa • 0
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133
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1
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two way get analysis data to get the obvious range difference in IGV
peak range chip-seq igv written 9 weeks ago by mikysyc2016 • 10 • updated 7 days ago by ATpoint ♦ 6.6k
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114
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How to mask motif in HOMER?
homer chip-seq mask motif written 8 days ago by salamandra • 160 • updated 8 days ago by Kevin Blighe ♦ 26k
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127
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How to use a specific promoter set on findMotifs.pl of HOMER?
homer promoter set chip-seq motifs written 8 days ago by salamandra • 160 • updated 8 days ago by Kevin Blighe ♦ 26k
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Prokaryotic protein binding motifs databases
genome sequence chip-seq tfs prokaryota written 11 days ago by Andrew Sonin • 0 • updated 10 days ago by manuel.belmadani • 50
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ChIP-seq: To use IDR, samples have to pass both tests or is it enough to pass the pseudo-replicate test?
idr chip-seq written 11 days ago by salamandra • 160
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165
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5 follow
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annotatePeaks.pl without annotation in genes name
chip-seq written 11 weeks ago by xiaoxiazhong053 • 0 • updated 12 days ago by prakash • 240
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80
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Meaning of mfold upper limit?
mfold macs2 chip-seq written 12 days ago by mbk0asis • 360
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73
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The problem of atac-seq analysis process steps with macs2
chip-seq atac-seq written 12 days ago by 1106518271 • 30 • updated 12 days ago by Devon Ryan ♦ 82k
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6 follow
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News: Bioinformatics workshop or training courses
news next-gen chip-seq rna-seq written 14 days ago by saj98 • 80 • updated 12 days ago by geocarvalho • 80
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69
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ChIP-Seq Read Counts
chip-seq written 12 days ago by teabonng • 10
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3
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158
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3
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obtaining unique peaks in DiffBind
diffbind chip-seq differential written 4 weeks ago by Illinu • 90 • updated 14 days ago by romicakerketta • 10
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News: Course "Epigenetics: on the top of genetics", Udine, Italy, 4-7 September 2018
hi-c news chip-seq smallrna bs-seq ngs written 14 days ago by Fabio Marroni • 1.8k
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What is the difference between "findMotifsGenome.pl" and "findMotifs.pl" in homer motif analysis?
motf analysis chip-seq written 15 days ago by mikysyc2016 • 10 • updated 15 days ago by reskejak • 10
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Sam to bowtie native format
quest chip-seq written 15 days ago by teabonng • 10 • updated 15 days ago by h.mon ♦ 18k
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Variation between different biological replications of chip-seq
chip-seq written 2.1 years ago by ebrahimiet • 40 • updated 16 days ago by Biostar ♦♦ 20
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