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2
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1
answer
43
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1
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NarrowPeak format -Peak field
bed chip-seq dnase-seq written 1 day ago by kimkes25 • 0 • updated 1 day ago by ATpoint ♦ 39k
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43
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0
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how can i evaluate the different between two samples of distribution of peaks in the genome of chip-seq
chip-seq written 2 days ago by zhao03 • 30
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0
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43
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0
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Flip the heatmaps of ChIP-seq data to match TSS of +/- strand in deeptools
chip-seq written 2 days ago by Sho • 0
0
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0
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40
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0
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Plot a dotted line to the start of the regions in computeMatrix, deepTools
chip-seq tool written 2 days ago by Sho • 0
1
vote
1
answer
49
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1
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Chip-Seq Peak Annotation
chip-seq written 3 days ago by NAIKANKIT1994 • 0 • updated 3 days ago by jared.andrews07 ♦ 7.3k
1
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1
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53
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1
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ChIPQC error when running example from documentation
R chip-seq chipqc written 3 days ago by DBScan • 20 • updated 3 days ago by jared.andrews07 ♦ 7.3k
3
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0
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65
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0
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What is the best peakcaller for H3 antibody?
chip-seq written 3 days ago by grx0326 • 0 • updated 3 days ago by hyperghjhon • 0
0
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1
answer
67
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1
answer
Failed to convert bamToBed, pair-end
chip-seq written 4 days ago by MJ • 0 • updated 4 days ago by swbarnes2 ♦ 8.7k
0
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1
answer
61
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1
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sparse peak calling
chip-seq written 4 days ago by kanwarjag • 1.1k • updated 4 days ago by AS • 0
1
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2
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112
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7 follow
2
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Does anyone know/would be willing to give me a guide on how to do ChIP-Seq data analysis?
next-gen chip-seq written 5 days ago by orchard4 • 10
0
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0
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111
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0
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findOverlapofPeaks discrepancy in peaklist vs Venn diagram
R chip-seq written 10 weeks ago by sayantani.ghoshdastidar • 0 • updated 5 days ago by Biostar ♦♦ 20
0
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0
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71
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0
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HOMER: ./findMotifsGenome.pl
homer chip-seq written 5 days ago by radicav06 • 0
0
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0
answers
60
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0
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Visualizing a bigwig ChIP-seq file over a region determined by a bed ChIP-seq file
bed sequencing correlation chip-seq bigwig written 6 days ago by topalsalih • 0
0
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2
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71
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2
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how to define cis regulatory elements using histone modifications ChIPseq
chip-seq written 8 days ago by hubenxia123 • 0
3
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1
answer
74
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1
answer
Alternative/Incorrect DiffBind outputs for each contrast when providing entire vs. partial datasheet
software error diffbind chip-seq written 7 days ago by gkunz • 10 • updated 7 days ago by jared.andrews07 ♦ 7.3k
0
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0
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55
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0
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News: Online training - NGS analysis for gene regulation and epigenomics
next-gen epigenomics genome news chip-seq R written 7 days ago by carlopecoraro2 • 1.8k
1
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1
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11k
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1
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Error: Encountered internal Bowtie 2 exception (#1) (ERR): bowtie2-align exited with value 1
chip-seq written 3.3 years ago by salamandra • 330 • updated 9 days ago by taufiqbge • 0
2
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0
answers
108
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0
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Deeptools correlation plot: between RNAseq and H3K27ac ChIPseq
deeptools h3k27ac chip-seq rna-seq correlation written 9 days ago by aditi225 • 0 • updated 9 days ago by genomax ♦ 90k
2
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1
answer
99
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1
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Aligned read loss after SAM to BAM conversion?
samtools alignment chip-seq written 9 days ago by saddamhusain77 • 0 • updated 9 days ago by swbarnes2 ♦ 8.7k
3
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4
answers
3.1k
views
6 follow
4
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Blacklisted regions for mm10
blacklisted regions chip-seq written 3.4 years ago by rbronste • 360 • updated 11 days ago by ATpoint ♦ 39k
1
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0
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100
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0
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Chia-pipe cannot find the module pigz
chia-pet next-gen chip-seq written 12 days ago by bioinfo89 • 40 • updated 12 days ago by RamRS ♦ 30k
0
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0
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161
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0
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Merging multiple fastq files and having IndexError when calling peaks using SICER
ngs chip-seq written 5 weeks ago by dcheng1 • 0 • updated 14 days ago by Biostar ♦♦ 20
5
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1
answer
120
views
1
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how matrix composition influences the final results in diff bind
diffbind chip-seq written 22 days ago by francesca3 • 30 • updated 22 days ago by Rory Stark • 790
2
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1
answer
174
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1
answer
How can I obtain genome-wide coordinates for the motif of a particular transcription factor?
chip-seq written 22 days ago by Spencer • 20
2
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2
answers
123
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2
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Saving results from GREAT
chip-seq great written 24 days ago by kanwarjag • 1.1k • updated 22 days ago by jared.andrews07 ♦ 7.3k
0
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0
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94
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0
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Append/Merge/Combining multiple VCF files
sequence next-gen chip-seq rna-seq sequencing written 22 days ago by akshaykum684 • 0
1
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1
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2.0k
views
1
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How to filter chip-seq results?
next-gen chip-seq written 6.3 years ago by jfrigola1 • 0 • updated 24 days ago by Biostar ♦♦ 20
1
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1
answer
187
views
1
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Align chip seq data to specific sequences not in reference genome
alignment chip-seq written 9 weeks ago by j.matt.franklin • 0 • updated 25 days ago by Biostar ♦♦ 20
0
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0
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168
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0
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help with segmentation fault deeptools
software error deeptools chip-seq written 28 days ago by campbell.1933 • 0
0
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0
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127
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0
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Forum: Welcome to join our Wechat group for Bioinformatics!
genome forum chip-seq algorithm rna-seq single-cell written 27 days ago by Min Dai • 160
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