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<prev • 2,186 results • page 1 of 73 • next >
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negative values in annotatePeaks.pl data Matrix output File
chip-seq written 4 days ago by daknonzhang • 0
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137
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1
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Motif analysis from H3K27ac ChIPseq broad peaks
next-gen chip-seq written 5 days ago by Prakash • 1.5k
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111
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1
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Advice on Handling Batch Effect in ChIP-seq Experiment
replicates sequencing chip-seq batch effect batch written 6 days ago by dmj6ab • 10
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2
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841
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6 follow
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[ChIP-seq. signal plot] How to align the based line of different samples?
deeptools chip-seq normalization written 20 months ago by chiefcat • 110 • updated 6 days ago by ricardo3889 • 20
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40-50% reds mapping to genome in a ChIP Seq experiment
alignment chip-seq written 6 days ago by ashwinkelkar • 0
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158
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Exploring H3K27me3 loss in cancer
h3k27me3 diffbind macs2 chip-seq histone written 9 days ago by Researcher • 40
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using scruff package example files
chip-seq written 8 days ago by lahav008 • 0
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114
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1
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Computing the significance of overlapping ChIP-seq peaks
chip-seq written 9 days ago by Marcel • 0 • updated 9 days ago by colin.kern • 420
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73
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1
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ChIP-seq heatmaps using binding site of an specific protein as a reference
chip-seq heatmap written 9 days ago by piecesofalegohouse • 0 • updated 9 days ago by colin.kern • 420
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109
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Is BETA suitable for plant research?
beta chip-seq rna-seq written 8 weeks ago by harrypotterandsbt • 40 • updated 14 days ago by Biostar ♦♦ 20
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Are MACS2's summit or DiffBind's summit options are recommended for histone marks like H3K4me3, H3K27me3, H3K27ac and H3K4me1?
diffbind macs2 chip-seq summit histone written 14 days ago by Researcher • 40
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77
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Single sample on flow cell with less than half as many reads as others on the same cell
sequence chip-seq sequencing written 14 days ago by mchair18 • 0
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96
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Transcription factor binding sites in cancer
chip-seq snp written 14 days ago by caokai001 • 10
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Detect trend among multiple ChIP-seq data
chip-seq written 15 days ago by dcheng1 • 0 • updated 15 days ago by ATpoint ♦ 23k
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4
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H3K4me3 occupancy visualisation
chip-seq written 4.0 years ago by Constantine • 240 • updated 15 days ago by Biostar ♦♦ 20
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low alignment rate with bowtie2 of ChIP-seq data 150bp pair end
bowtie2 chip-seq bwa low alignment rate written 16 days ago by Shuang He • 0
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1
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Imputation and haplotype phasing in Bovine 50K SNP data
software error chip-seq snp written 16 days ago by kas • 0
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99
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Job: Postdoc in Autism Epidemiology
R sequence chip-seq job snp written 17 days ago by magdalena.janecka • 0
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83
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Understanding columns of ChIP-Seq BED file format
genome bed chip-seq sequencing written 17 days ago by singram • 0
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127
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The feature distribution of genome itself on chip-seeker
chip-seq written 20 days ago by bright602 • 30
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111
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1
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Plotting chip signal at TSSs with deeptools
deeptools chip-seq computematrix written 20 days ago by srhic • 0 • updated 20 days ago by Devon Ryan ♦ 91k
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chipseq data analysis
R chip-seq written 2.4 years ago by praveenhcu131 • 0 • updated 21 days ago by Biostar ♦♦ 20
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88
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1D ChIP-seq dimension from HiChip data
chip-seq chia-pet hichip hicpro hic written 21 days ago by ra2967 • 20
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111
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PeakSeq Mappability Map says no mappable sequences?
chip-seq written 23 days ago by flyguy2000 • 0
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1
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111
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1
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Condition of the chromosomes during the Chip-seq experiment for histone marks.
chip-seq written 23 days ago by panacotaforcota • 0
2
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653
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Tool: pytfmpval: Efficient, accurate p-value computation for position weight matrices
pwm tool p-value python chip-seq motifs written 12 months ago by jared.andrews07 • 3.1k • updated 23 days ago by caokai001 • 10
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121
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1
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H3K4me3 in promoter regions, which are free of nucleosomes
h3k4me3 promoter chip-seq nucleosome written 24 days ago by panacotaforcota • 0 • updated 24 days ago by ATpoint ♦ 23k
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2
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178
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2
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ChIP-seq and histone-seq databases
genome chip-seq written 4 weeks ago by spinella • 0
4
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2
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172
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2
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Meaningful DE using rpkm values in a RNA-Seq analysis
R sequencing chip-seq rna-seq assembly written 4 weeks ago by Seq225 • 90 • updated 29 days ago by c.chakraborty • 140
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116
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1
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Dealing with spike-in reads that overlap between two genomes
drosophila spike-in arabidopsis chip-seq written 4 weeks ago by juanpjlozano • 0 • updated 4 weeks ago by colin.kern • 420
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