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2
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816
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2
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Can we call a protein under undergone ChIP as ChIP'd protein? Is it formal?
chip chip-seq ngs sequencing written 3.6 years ago by Sukhdeep Singh ♦ 9.6k • updated 18 hours ago by Biostar ♦♦ 20
0
votes
1
answer
70
views
1
answer
How to subset S4 list with 5 Granges elements
chip-seq written 10 days ago by khani.sajjad • 0 • updated 1 day ago by RamRS ♦ 20k
0
votes
0
answers
113
views
0
answers
Job: Principal/Sr Principal Scientist, bioinformatics
genome next-gen chip-seq job rna-seq written 2 days ago by Katja • 0 • updated 2 days ago by Medhat ♦ 8.1k
5
votes
1
answer
115
views
1
answer
MACS2 option for ATAC seq?
peak-calling macs2 chip-seq atac-seq dnase-seq written 4 days ago by star • 110
6
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3
answers
4.8k
views
5 follow
3
answers
Generate Random Genomic Regions
chip-seq written 5.6 years ago by ChIP • 490 • updated 3 days ago by Andrewoods • 90
1
vote
1
answer
55
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1
answer
Low % Phred Q30 for one of the lanes in HiSeq 4000 SE50 run
barcode chip-seq sequencing written 3 days ago by kspata • 40 • updated 3 days ago by genomax ♦ 62k
7
votes
1
answer
180
views
1
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ChipSeq using MACS2 - option to not call peaks with only few reads ?
macs2 chip-seq written 17 days ago by Bastien Hervé ♦ 3.3k
0
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0
answers
47
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0
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MEME-chip: selecting the input sequences to be equal length
meme-chip meme x-seq chip-seq written 4 days ago by guixien • 0
5
votes
1
answer
83
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1
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shall we consider -- keep-dup all when we removed duplication?
duplicate macs2 peak-calling chip-seq written 5 days ago by star • 110 • updated 5 days ago by benformatics • 490
0
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0
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100
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0
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Job: PostDoc Position in Cancer Genomics
next-gen genome chip-seq job sequencing rna-seq written 5 days ago by s.piscuoglio • 0
8
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3
answers
5.6k
views
3
answers
Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
paired-end chip-seq normalisation written 4.0 years ago by James Ashmore • 2.6k • updated 5 days ago by Biostar ♦♦ 20
0
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1
answer
101
views
1
answer
Normalizing ChIP-seq and ATAC-seq data?
normalization macs2 chip-seq alignment written 7 days ago by star • 110
0
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0
answers
33
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0
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error in rGADEM
chip-seq written 7 days ago by saumya2sarkar2 • 0
2
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1
answer
90
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1
answer
From coverageBed to a list of reads per genes
chip-seq written 8 days ago by Bnf83 • 130 • updated 8 days ago by rrbutleriii • 50
2
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0
answers
90
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0
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Chip seq (ac) reads count per pick
chip-seq written 9 days ago by Bnf83 • 130 • updated 9 days ago by Pierre Lindenbaum ♦ 116k
0
votes
1
answer
72
views
1
answer
ChIP-Seq density plot of the TSS regions?
bedtools deeptools ase chip-seq igv written 11 days ago by Susmita Mandal • 20 • updated 11 days ago by i.sudbery ♦ 3.8k
0
votes
1
answer
72
views
1
answer
Differential Binding in Partek
partek chip-seq atac-seq written 12 days ago by DVA • 490 • updated 12 days ago by kgosche • 0
3
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2
answers
906
views
2
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Narrow & Broad peaks from 'macs2 bdgdiff'
macs2 next-gen chip-seq peakcalling sequencing written 17 months ago by anu014 • 160 • updated 16 days ago by MMa • 250
1
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2
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149
views
2
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Assembly database choice for RNA-seq and ChIP-seq
chip-seq rna-seq written 22 days ago by lshepard • 140
14
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1
answer
136
views
1
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Is blacklisted regions filtering in ChIP-seq still needed? (let's talk about the state of the art)
blacklist chip-seq filtering written 18 days ago by msimmer92 • 100 • updated 18 days ago by Devon Ryan ♦ 88k
3
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0
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146
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5 follow
0
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Integrating NGS Data for Machine Learning
chip-seq machine learning rna-seq written 20 days ago by email.egail • 0 • updated 20 days ago by timpaines • 0
4
votes
1
answer
971
views
1
answer
How can I select my Chip-seq genes (targets) in my Rna-seq data?
chip-seq cufflinks cuffdiff rna-seq written 2.0 years ago by LuisNagano • 10 • updated 24 days ago by Biostar ♦♦ 20
4
votes
1
answer
193
views
1
answer
how to install Juicer hi-c
chip-seq written 4 weeks ago by dimitrischat • 60
2
votes
0
answers
169
views
0
answers
TSS sites of GRCM38
chip-seq tss written 25 days ago by kanwarjag • 930
0
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0
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125
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0
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How to compare footprints (motifs found) from two different packages after peak calling using MACS2?
chip-seq atac-seq written 25 days ago by vatsal.mehra • 0
0
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1
answer
568
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1
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How to find lncRNA when I already knew target microRNAs?
assembly chip-seq rna-seq written 22 months ago by charlesleewd • 0 • updated 25 days ago by Kevin Blighe ♦ 37k
1
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0
answers
111
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0
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Identify genes with chip signal > input prior to peak calling
enrichment galaxy chip-seq chip signal deeptools written 26 days ago by SciDuck • 10
5
votes
1
answer
125
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5 follow
1
answer
Loop over .sai files coupled with .fastq.gz
chip-seq unix written 27 days ago by Bnf83 • 130 • updated 27 days ago by arup • 840
1
vote
1
answer
159
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1
answer
ChIP-Seq Analysis allele specific way?
vcf chip-seq ngs macs2 ase written 27 days ago by Susmita Mandal • 20 • updated 27 days ago by Devon Ryan ♦ 88k
15
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6
answers
5.4k
views
13 follow
6
answers
bedtools coverage gives error received illegal bin number, but that number isn't in my data!
bedtools bin chip-seq coverage error written 2.0 years ago by tara.alpert • 30 • updated 28 days ago by pangxy3 • 0
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