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<prev • 1,908 results • page 1 of 64 • next >
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Can one use STAR (splice-aware) to align genomic DNA (non-spliced)
genome chip-seq written 1 day ago by goodez • 280
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635
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9 follow
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Tool: [Crushing the bureaucracy in bioinformatics] Introducing Skymap-JupyterHub: accessing and utilizing reprocessed expression/ allelic read count profiles from >400,000 sequencing runs made simple
chip-seq snp rna-seq tool written 9 weeks ago by btsui • 270
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Could I call peaks without input control for histone modification's data?
chip-seq written 4 days ago by treywea • 0
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123
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Heatmap using publicly available Chip-Seq data
bigbed chip-seq bigwig blueprint heatmap written 5 days ago by bhuwankhatri11 • 30
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1
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102
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1
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2 peak files in plotAvgProf2 [ChIPseeker]
R bioconductor chip-seq chipseeker written 9 days ago by anu014 • 150 • updated 8 days ago by zx8754 ♦ 5.4k
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146
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Does it make sense to consider a genomic loci when there is no peak but high signal?
chip-seq written 10 days ago by venu ♦ 5.6k • updated 10 days ago by jared.andrews07 • 1.3k
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102
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Possible reason for no peaks generated by MACS2
macs chip-seq written 10 days ago by Louis Kok • 10
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2
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237
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How to get strand information in the bed file of macs1.4 peak calling output?
next-gen chip-seq written 8 weeks ago by harikrishnanc903 • 0 • updated 10 days ago by ZZzzzzhong • 110
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1
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238
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1
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The m6A-Seq analysis
chip-seq m6a-seq written 4 months ago by wangdp123 • 120 • updated 10 days ago by ZZzzzzhong • 110
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How do I configure the read name output from STAR?
paired-end picard chip-seq star written 3.5 years ago by jgbradley1 • 90 • updated 11 days ago by RamRS ♦ 18k
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2
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131
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2
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Consensus motif of closely related TFs
motif pwm sequence chip-seq transcription factor written 29 days ago by rbronste • 170 • updated 11 days ago by simon.vanheeringen • 160
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265
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Job: Cancer Biology Bioinformaticist
next-gen chip-seq job rna-seq sequencing written 11 days ago by joshuajmeeks • 10
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1
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101
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1
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Where to find snRNA annotations?
annotation chip-seq written 12 days ago by goodez • 280
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142
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Is it possible to visualize ChIP peaks of three different samples in one plot using ChIPseeker?
bdg chip-seq chipseeker written 16 days ago by swadha • 20 • updated 13 days ago by ZZzzzzhong • 110
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133
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Job: Postdoc @ Mount Sinai School of Medicine (New York City): Bacterial Genomics and Epigenomics
genome methylation chip-seq job rna-seq written 14 days ago by fanggang • 60
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1
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82
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Ensembl bacterial genome alignment - use top level or chromosome?
ensembl alignment chip-seq bacteria chromosome written 17 days ago by Boboboe • 10 • updated 16 days ago by Emily_Ensembl ♦ 16k
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120
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unable to access encode
encode chip-seq written 4 weeks ago by Young • 0 • updated 21 days ago by WouterDeCoster ♦ 32k
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1
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2.3k
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1
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Different results with manual MACS tool vs. workflow automated MACS tool for ChIP analysis
macs lambda workflow chip-seq forum written 3.9 years ago by christopher.paran • 0 • updated 22 days ago by zx8754 ♦ 5.4k
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303
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5 follow
1
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Can be merged biological replicates?
chip-seq macs2 peak-calling atac-seq rna-seq written 8 weeks ago by star • 60 • updated 24 days ago by ZZzzzzhong • 110
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Job: Postdoc @ Mount Sinai School of Medicine (New York City): Epigenomics and Transcriptomics of Human Diseases
next-gen chip-seq job rna-seq written 25 days ago by fanggang • 60
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1
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123
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1
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Help setting up lncRNA-screen from github
bioinformatics github chip-seq rna-seq lncrna written 26 days ago by natanamorim.moraes • 0 • updated 26 days ago by jared.andrews07 • 1.3k
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11k
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Bowtie2 (ERR): bowtie2-align exited with value 1
bowtie2 alignment chip-seq written 2.7 years ago by s-root • 0 • updated 28 days ago by RamRS ♦ 18k
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1
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158
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question about calling peak by macs2
chip-seq written 29 days ago by ch8316f5eyu • 0 • updated 29 days ago by goodez • 280
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111
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Extracting gene ID of overlapping peaks between different Chip-seqs
R chip-seq written 29 days ago by dthaper • 0 • updated 29 days ago by zx8754 ♦ 5.4k
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179
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5 follow
1
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Macs called peaks shorter than 1kb
chip-seq written 4 weeks ago by dcheng1 • 0 • updated 4 weeks ago by benformatics • 290
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Downloading CHIP-seq bed files for ENCODE Histone modification data
encode chip-seq histone modifers written 2.7 years ago by morovatunc • 380 • updated 5 weeks ago by RamRS ♦ 18k
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1.3k
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ValueError: invalid literal for int() with base 10: 'start' computeMatrix of deeptools
deeptools chip-seq written 16 months ago by salamandra • 170 • updated 5 weeks ago by RamRS ♦ 18k
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3
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7 follow
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BagFoot TF foot printing
R bagfoot bagfootr chip-seq written 12 months ago by rbronste • 170 • updated 5 weeks ago by Ashley Stephen Doane • 10
2
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1
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216
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1
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Motif location for enriched motif in HOMER
next-gen chip-seq written 7 weeks ago by prakash • 510 • updated 5 weeks ago by genomax ♦ 57k
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4.4k
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Conversion Of Bar To Wig Format
wiggle chip-seq written 8.3 years ago by Ian ♦ 5.2k • updated 5 weeks ago by RamRS ♦ 18k
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