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How to Blast with multiple species - Phylogenetic Analysis
alignment sequence chip-seq written 1 hour ago by dimitrischat • 110
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137
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bedGraphToBigWig file converter
macs2 sequence chip-seq bedgraphtobigwig written 7 weeks ago by iridha • 0 • updated 5 hours ago by Biostar ♦♦ 20
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1
answer
32
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1
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Annotate peaks and G quadruplex
chip-seq written 12 hours ago by ab2063 • 10 • updated 10 hours ago by gdaly9000 • 10
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5.3k
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Tool: Weeder 2.0 - motif discovery tool updated
weeder motif discovery chip-seq tool written 5.6 years ago by Ian ♦ 5.6k • updated 21 hours ago by marco.bardus • 0
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1
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58
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1
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How to generate a bed file from X:21915521-21918496 list
sequence chip-seq written 1 day ago by perropery • 0 • updated 1 day ago by brunobsouzaa • 150
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50
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Intersectbed of Homer and MAcs2 peak caller results
software error alignment chip-seq written 1 day ago by bulkybogany • 0
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42
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How to query a set of genes in ChIPSeq data-in ChiPSeeker/ClusterProfiler?
gene R chip-seq written 2 days ago by goodwinjinesh • 0
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67
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Microarray data correlation plot between highly expressed genes
R chip-seq rna-seq python written 4 days ago by asmitabioinfo2203 • 0
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1
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62
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1
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count data from microarray dataset 72 CEL file and related ARR files.
R chip-seq microarray affimatrix cel and arr files written 5 days ago by aarvaBioinfo • 10
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1
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Can we draw PCA with genotyping data align with geographic data for two different populations in different locations?
genome chip-seq snp written 24 days ago by XYZeinab • 0
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57
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gff3 format, modENCODE, score and ChIP-Seq
score chip-seq bed file written 7 days ago by mkh • 40 • updated 7 days ago by genomax ♦ 83k
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82
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Visualizing a set of genes in ENCODE ChIPseq dataset-Any tools or tutorials?
genome R chip-seq written 10 days ago by goodwinjinesh • 0
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80
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Recommendation for using limma-voom workflow for ChIPseq analysis. Or other tool for capturing global histone mark difference?
chip-seq written 10 days ago by bioinfouser • 50
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1
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687
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1
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Using STAR mapping multiple files get loop issue
gene software error chip-seq rna-seq written 12 months ago by lingziqi8278 • 0 • updated 10 days ago by Biostar ♦♦ 20
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2
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207
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7 follow
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How to avoid hardcoding in R? How to automatize R scripts?
R chip-seq r programming rna-seq written 12 days ago by bioinfouser • 50
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52
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Hypergeometic test for the overlap of two set of genomic intervals (e.g. from Chip-seq data)
hypergeometic test chip-seq statistics written 11 days ago by guixien • 0
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3
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161
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3
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ChIP seq: Trying to use ChIPQC to measure quality of reads
chip-seq written 26 days ago by aropri • 0
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65
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Log2 fold change correlation for ChIP seq data - do I need a FDR cut off?
chip-seq written 16 days ago by emilyprice16 • 0
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81
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What information does ChIA-PET2 tool trim statistics terms provide exactly?
chip-seq written 16 days ago by bioinfo89 • 40
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73
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Transcription regulation and CHIP-seq questions
sequence chip-seq sequencing written 16 days ago by jbrody11 • 0
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90
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Annotation of acetylation ChIP-seq peaks to the nearest gene and reads cont
chip-seq written 20 days ago by elb • 170
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1.9k
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how to treat replicates with Chip-seq meta-analysis
sequence chip-seq written 5.9 years ago by Krisr • 460 • updated 20 days ago by Biostar ♦♦ 20
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2
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132
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2
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Difference of DiffBind library size normalisation vs DESeq2 library size normalisation
diffbind deseq2 chip-seq rna-seq normalisation written 21 days ago by bioinfouser • 50 • updated 21 days ago by Rory Stark • 660
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70
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Mapping Histone Chip-seq reads to defined region around TSS of RefSeq genes
chip-seq written 21 days ago by Researcher • 0
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0
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64
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HOMER motif finder, output divergent organisms
motif finder chip-seq written 23 days ago by santosL • 0
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109
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1
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How to best summarize read counts overlapping promoters when read counts are defined from different regions
gene assembly next-gen chip-seq rna-seq written 23 days ago by jamespower • 50 • updated 23 days ago by geek_y ♦ 11k
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85
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SICER for ChIP-seq broad peaks
chip-seq sicer written 23 days ago by marco • 0
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1
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135
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1
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Obtained too many chip-seq peaks after diffbind, how to set a criteria to select more "significant" genes?
diffbind chip-seq written 25 days ago by yepeh72919 • 10 • updated 23 days ago by Rory Stark • 660
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106
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Changing distance to TSS (tssRegion in ChIPseeker) during peak annotation in ChIP-seq analysis does not change the total number of genes associated with the peaks
chip-seq written 24 days ago by vyazar • 10
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1
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139
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1
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Error while invoking. dba.analyze() in DiffBind
software error R chip-seq written 25 days ago by PocketChange • 0 • updated 24 days ago by Rory Stark • 660
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