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Identifying the orientation of a CTCF motif?
chip-seq ctcf written 2 days ago by Sinji • 2.5k • updated 5 hours ago by simon.vanheeringen • 40
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79
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Group aware normalisation of genomics data
qsmooth chip-seq genomics rna-seq written 1 day ago by geek_y ♦ 8.0k
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MACS2 BAMPE and BEDPE gave dramatically different "mean fragment size"
chip-seq written 1 day ago by Xinwei Han • 0
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91
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problem with QuasR alignment
quasr chip-seq rna-seq written 1 day ago by ta_awwad • 100
3
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1
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129
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1
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Huge difference between differential peaks with EdgeR and DESeq2 using Diffbind
R diffbind deseq2 chip-seq edger written 2 days ago by daniele.avancini • 0
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2
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197
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5 follow
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Subtracting one BAM [control] from another BAM [sample].
assembly next-gen chip-seq written 2 days ago by anupriyaverma1408 • 100 • updated 2 days ago by Pierre Lindenbaum ♦ 99k
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111
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1
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Transcriptomic features of peaks at mature mRNA level
genome chip-seq written 5 days ago by Ezhil La • 10 • updated 2 days ago by Carlo Yague • 3.2k
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86
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Single cell Hi-C vs Population based Hi-C
genome chip-seq sequencing written 2 days ago by ankitplusplus • 10
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70
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How does RSEM allocate ChIPseq signals to genes?
gene assembly next-gen chip-seq written 5 days ago by moushengxu • 260
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897
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would it be a good idea to normalize log2 fold changes with loess?
chip-seq rna-seq written 21 months ago by tonja.r • 400 • updated 5 days ago by Biostar ♦♦ 20
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89
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question about FASTA file extracted from RSAT
chip-seq written 6 days ago by kanwarjag • 790 • updated 5 days ago by Pierre Lindenbaum ♦ 99k
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2
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149
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motif in set of genes
chip-seq written 8 days ago by rob.costa1234 • 120 • updated 6 days ago by simon.vanheeringen • 40
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114
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Download Metacyc data
genome alignment sequence chip-seq rna-seq written 23 days ago by sinumolgeorge • 0 • updated 6 days ago by Biostar ♦♦ 20
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4
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6 follow
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Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
sra samtools sam chip-seq written 3.7 years ago by bede.portz • 450 • updated 7 days ago by genomax ♦ 34k
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News: Training in Creating Plots, Graphs and Maps using R @ NIH, USA, October 24-27, 2017
next-gen news chip-seq training R rna-seq written 12 months ago by AABI • 80
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2
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120
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2
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Motif seq in input seq and genes
chip-seq written 8 days ago by kanwarjag • 790 • updated 8 days ago by vchris_ngs • 4.0k
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1
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168
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1
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HG-U95 Gene Chip Microarray Platform Expression Data
chip-seq microarray written 8 weeks ago by lmanohara99 • 20 • updated 11 days ago by Kevin Blighe • 3.1k
2
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1
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192
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1
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NGS DATA ANALYSIS
next-gen chip-seq rna-seq written 13 days ago by rajasekargutha • 20 • updated 12 days ago by django.waddle • 30
1
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1
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148
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1
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How to specify one or more input files in PICARD Mark duplicates tool??? How to specify the paired end reads???
assembly next-gen alignment chip-seq written 13 days ago by ashwinireddy.challa • 10 • updated 13 days ago by Kevin Blighe • 3.1k
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3
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469
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3
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Error for read density visualization
chip-seq written 17 months ago by jolin0701-dy • 50 • updated 13 days ago by imtheman69 • 0
9
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221
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5 follow
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STAR align multiple files
alignment chip-seq star rna-seq written 19 days ago by ta_awwad • 100
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211
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Motif prediction in Bacteria species using HOMER [Chip-seq]
genome motif next-gen chip-seq written 7 weeks ago by anupriyaverma1408 • 100 • updated 14 days ago by Biostar ♦♦ 20
5
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1
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155
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1
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[How to Save plots in R] DiffBind
R diffbind chip-seq written 15 days ago by chiefcat • 70 • updated 15 days ago by Rory Stark • 300
4
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1
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225
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1
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HOMER annotatePeaks.pl problem
homer chip-seq rna-seq written 21 days ago by mosharrofgeb • 30
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283
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From bed file to enrichment score
chip-seq written 11 weeks ago by GK1610 • 20 • updated 16 days ago by Biostar ♦♦ 20
4
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158
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Bioinformatics Tools for Novel Gene Search
chip-seq rna-seq written 18 days ago by benjyrolls • 70
19
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4
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356
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14 follow
4
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Visualization for ChIP-seq analysis
differential analysis motif detection chip-seq written 22 days ago by nvucic • 30 • updated 18 days ago by simon.vanheeringen • 40
1
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139
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How to know which illumina adapters trimm using BCL files
next-gen chip-seq rna-seq sequencing written 19 days ago by patrick-douglas • 0
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205
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Job: Postdoctoral Fellow/Research Fellow
chip-seq job rna-seq written 19 days ago by hr.science • 0
10
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3
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273
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7 follow
3
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ChIP-seq. analysis Tutorial for Dummies
dummy chip-seq written 4 weeks ago by chiefcat • 70 • updated 19 days ago by Kevin Blighe • 3.1k
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