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Plotting multiple signal files against a single genomic region
deeptools chip-seq rna-seq written 5 weeks ago by keller.mckowen • 10 • updated 2 days ago by Alex Reynolds ♦ 23k
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Difference in number of peaks called
macs2 chip-seq peakcalling written 10 months ago by anu014 • 140 • updated 2 days ago by colindaven • 600
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How to calculate distribution of mapped read over classes of RNA?
chip-seq rna-seq written 4 days ago by biplab • 40 • updated 3 days ago by Kevin Blighe ♦ 17k
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How can I save the output from samtools and awk as a bam file?
chip-seq written 21 months ago by GK1610 • 30 • updated 4 days ago by genomax ♦ 46k
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News: Epigenomics Workshop in Berlin (28th May-1st June 2018)
genome news sequence chip-seq rna-seq written 4 days ago by carlopecoraro2 • 650
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78
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micro array analysis
software error chip-seq written 6 days ago by morteza.hadizade • 0 • updated 5 days ago by h.mon ♦ 13k
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Job: Postdoc in Computational Cancer Genomics at University of Minnesota
next-gen chip-seq job rna-seq written 6 days ago by yang4414 • 10
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Tool: Transcription Factor Binding Sites, Motifs and Profiles from ~10200 ChIP-seq and ~20000 RNA-seq samples
transcription factor lncrna chip-seq tool mirna written 18 months ago by lsp03yjh • 520
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Bedgraph Size Limit Upload to UCSC
chip-seq rna-seq written 9 days ago by virlana.shchuka • 0 • updated 9 days ago by ATpoint • 3.5k
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Calculate the total genie length targeted in my chIP
genic_length enrichment chip-seq bedtools written 9 days ago by Zee_S • 0 • updated 9 days ago by zx8754 ♦ 3.9k
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Extracting the exact motif location from FIMO
fimo meme motif chip-seq written 10 days ago by rbronste • 160 • updated 9 days ago by h.mon ♦ 13k
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which tool I can use to defined varying-size, equal-coverage chromosomal windows
genome chip-seq sequencing written 10 days ago by weiyanjia2008 • 0
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10 follow
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Forum: Airport.bio: First class ticket to any biological database in the world
forum chip-seq rna-seq snp written 11 days ago by Bohdan Khomtchouk • 320 • updated 11 days ago by Alex Reynolds ♦ 23k
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How to add Unique Peak ID to a bed file created from MACS for HOMER analysis
macs homer chip-seq written 11 days ago by Bella_p • 50 • updated 11 days ago by b.nota • 3.7k
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News: Epigenomics Workshop in Berlin (28th May-1st June 2018)
chip-seq news epigenomics rna-seq written 11 days ago by carlopecoraro2 • 650
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5 follow
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Bam to RPM Bedgraph Conversion
chip-seq written 23 days ago by virlana.shchuka • 0
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Bam to BigWig loss of data at MACS peaks (nothing in the BigWig why?)
chip-seq peaks bigwig bam written 12 days ago by contreras.xavier • 0 • updated 12 days ago by genomax ♦ 46k
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Suboptimization in Developmental Enhancers. MOTIF variation
drosophila gene regulation chip-seq written 9 weeks ago by carlosalfonsogonzalez6 • 0 • updated 12 days ago by Biostar ♦♦ 20
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After ChIP, is there more DNA in treated samples than untreated control samples?
chip-seq written 13 days ago by Pei • 0
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converting log-odds ratio to p-value in HOMER
chip-seq written 13 days ago by sumithrasank75 • 80
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Isn't fastq file header suppose to have barcode sequence?
quality control chip-seq written 8 weeks ago by salamandra • 110 • updated 13 days ago by Biostar ♦♦ 20
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 4 weeks ago by erwan.scaon • 490 • updated 13 days ago by Rory Stark • 410
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Where can I find GV .genome files for igvtools
chip-seq igv written 14 days ago by Bella_p • 50 • updated 13 days ago by dariober ♦ 9.0k
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News: 5-day Epigenomics Workshop in Berlin. Last Call
genome R news chip-seq rna-seq written 14 days ago by carlopecoraro2 • 650
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Job: PostDoc position in Bioinformatics / Computational Biology @ Italian Institute for Genomic Medicine
next-gen chip-seq job sequencing R rna-seq written 15 days ago by matteo.cereda • 0
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Job: Visiting Research Specialist in Life Science - University of Illinois Urbana-Champaign
assembly python chip-seq job R rna-seq written 15 days ago by Chris Fields • 1.9k
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80
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Using igvtools count with bam anf bam.bai files
igvtools chip-seq sequencing written 16 days ago by Bella_p • 50 • updated 16 days ago by h.mon ♦ 13k
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5 follow
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Forum: New Aligner Tool - Would you be interested in this ?
assembly next-gen forum chip-seq alignment rna-seq written 17 days ago by Andrew_MacGregor • 30 • updated 17 days ago by jrj.healey • 3.8k
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How to plot the TF binding occupancy around a specific regulatory region?
chip-seq tf-binding plot written 17 days ago by Bioinformatist Newbie • 220
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How to ensure your data is truly labeled?
next-gen chip-seq rna-seq sequencing written 17 days ago by Hughie • 0
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