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3
votes
2
answers
1.6k
views
2
answers
Exome versus RNA sequencing
assembly chip-seq rna-seq written 3.2 years ago by Abdul Rafay Khan • 1.1k • updated 1 day ago by Biostar ♦♦ 20
0
votes
1
answer
47
views
1
answer
GSEA after MACS2 peak calling for ChIP-seq; want positive enrichment only
macs2 chip-seq gsea written 3 days ago by dariasc • 0 • updated 3 days ago by alserg • 340
2
votes
0
answers
80
views
0
answers
How to remove lines/headers from a SAM file after combined from different lanes
genome R chip-seq rna-seq written 4 days ago by mudithekanayake • 0
0
votes
1
answer
87
views
1
answer
Filtering TRANSFAC to get human TF motifs only
meme chip-seq atac-seq transfac written 5 weeks ago by ahmed.saadawi • 0 • updated 5 days ago by Biostar ♦♦ 20
2
votes
0
answers
170
views
0
answers
Job: Postdoctoral Scientist Position in Computational Biology at University of Missouri
postdoc chip-seq job scrnaseq written 5 days ago by Obi Griffith ♦ 18k
1
vote
1
answer
70
views
1
answer
How to visualize narrowPeak file after peak calling using MACS?
genome chip-seq rna-seq written 6 days ago by mudithekanayake • 0 • updated 6 days ago by colin.kern • 810
1
vote
0
answers
74
views
0
answers
Indexing Genome Commands in Linux (hummingbird-ucsc)
bowtie2 chip-seq linux written 9 days ago by Scott McKay • 20
0
votes
0
answers
140
views
0
answers
Job: Post-Doctoral position (Bioinformatics) in the Chromosome Dynamics team at the Institut des Sciences des Plantes - Paris-Saclay (IPS2)
R next-gen chip-seq job written 10 days ago by pixie@bioinfo • 1.4k
0
votes
0
answers
58
views
0
answers
Macs2 output shows only single basepair peak instead of a section of DNA
macs callpeak macs2 chip-seq written 10 days ago by fdewards • 0 • updated 10 days ago by genomax ♦ 78k
6
votes
1
answer
93
views
1
answer
Motif match chip-seq peaks
chip-seq sequencing written 10 days ago by ta_awwad • 250 • updated 10 days ago by ATpoint ♦ 29k
2
votes
1
answer
122
views
5 follow
1
answer
How to decide the parameters and parameter values when running ChIP-seq Peak Calling for H3K27ac data in MACS?
genome next-gen chip-seq rna-seq written 11 days ago by mudithekanayake • 0 • updated 11 days ago by mark.ziemann • 1.2k
1
vote
0
answers
146
views
0
answers
How can I analyse ChIP-seq and BioID results and functionally grouping them
bioid R bioconductor chip-seq written 5 weeks ago by ergnnrabia • 0 • updated 13 days ago by Biostar ♦♦ 20
8
votes
1
answer
428
views
6 follow
1
answer
Motif analysis from H3K27ac ChIPseq broad peaks
next-gen chip-seq written 5 months ago by Prakash • 1.8k • updated 14 days ago by Biostar ♦♦ 20
1
vote
1
answer
87
views
1
answer
Which type of Annotation is QD, FS, MQ, MQRankSum, ReadPosRankSum, SOR.
genome next-gen chip-seq snp sequencing written 16 days ago by yoh1242 • 0 • updated 15 days ago by Kevin Blighe ♦ 54k
6
votes
1
answer
1.9k
views
1
answer
How to smooth (ggplot2) 3 samples in the same plot
R ggplot2 chip-seq smooth plot written 3.1 years ago by Lila M • 800 • updated 15 days ago by Biostar ♦♦ 20
0
votes
1
answer
80
views
1
answer
Homer software -size parameter
gene chip-seq atac-seq sequencing written 17 days ago by yanweng • 30
0
votes
0
answers
82
views
0
answers
Obtain gene ontologies using curated GO list as database
R gene ontology chip-seq go ontology written 18 days ago by yepeh72919 • 10
1
vote
0
answers
69
views
0
answers
how to get RNA-binding proteins in mouse
clip-seq proteomics chip-seq rna-seq written 18 days ago by ta_awwad • 250
0
votes
1
answer
835
views
1
answer
Error while annotating with Chipseeker
chip-seq diffbind chipseeker annotation written 11 months ago by hamaor • 0 • updated 19 days ago by michal.okoniewski • 0
6
votes
3
answers
182
views
7 follow
3
answers
ATAC-seq 150bp reads
next-gen chip-seq atac-seq sequencing written 23 days ago by ta_awwad • 250 • updated 21 days ago by igor ♦ 9.5k
1
vote
1
answer
2.1k
views
1
answer
MACS, effective genome size
macs chip-seq written 5.7 years ago by marina-orlova • 70 • updated 23 days ago by Biostar ♦♦ 20
3
votes
2
answers
801
views
8 follow
2
answers
Homer error, how to call homer properly in a script? and how to know that it's actually working
chip-seq written 7 months ago by elshaimaa.ali • 0 • updated 24 days ago by Ankur B. Sharma • 10
2
votes
1
answer
82
views
1
answer
Chromatin states in human neurons?
chip-seq chromatin states neuron written 24 days ago by gspirito • 0 • updated 24 days ago by German.M.Demidov • 1.4k
12
votes
2
answers
327
views
10 follow
2
answers
ATAC-seq sample normalization (quantil normalization)
normalization chip-seq atac-seq written 8 weeks ago by Flo • 30 • updated 25 days ago by Malcolm.Cook • 1.1k
1
vote
1
answer
545
views
1
answer
ChIP-Seq Analysis allele specific way?
vcf chip-seq ngs macs2 ase written 13 months ago by Susmita Mandal • 60 • updated 27 days ago by Ankit • 130
1
vote
0
answers
149
views
0
answers
Looking for the soft that generated this figure
chip-seq written 27 days ago by pierre.priam • 0 • updated 27 days ago by ATpoint ♦ 29k
3
votes
1
answer
119
views
1
answer
Software for Gene ontology enrichment graph
cosmic gene ontology chip-seq go written 27 days ago by yepeh72919 • 10 • updated 27 days ago by snijeshvp • 40
1
vote
0
answers
76
views
0
answers
Edit Sam file at specific position
alignment next-gen sequence chip-seq rna-seq written 28 days ago by zinderelly • 0
3
votes
2
answers
125
views
2
answers
chip seq peaks are very long
chip-seq written 4 weeks ago by yiren • 0
0
votes
1
answer
118
views
1
answer
Not sure if pipe from bowtie2 to samtools is working?
chip-seq syntax samtools bowtie2 pipes written 4 weeks ago by ejwright • 0 • updated 4 weeks ago by ATpoint ♦ 29k
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