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Forum: Chip-Seq Data Analysis
forum chip-seq written 8.8 years ago by Raony Guimarães • 1.1k • updated 1 hour ago by prgrmmr70 • 0
2
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1
answer
44
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1
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Deeptools plotHeatmap values
plotheatmap deeptools tables chip-seq written 7 hours ago by saha.shagnik • 0 • updated 3 hours ago by 2nelly • 260
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44
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Cut&Tag / ChIPseq analysis
cut&amp;tag chip-seq written 1 day ago by wenbinm • 20
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85
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Job: Job Posting - Computational Biologist at UTSW
next-gen chip-seq job rna-seq written 1 day ago by Laura.banaszynski • 0
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1
answer
50
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1
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CLIP enrichment analysis
chip-seq written 2 days ago by noahhelton98 • 0 • updated 2 days ago by i.sudbery ♦ 11k
5
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1
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81
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1
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bamCoverage bin size for narrow and broad histone marks
deeptools chip-seq written 2 days ago by Marco • 20
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55
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Correlation heatmap for ChIP-seq data: Pearson or Spearman?
chip-seq correlation deeptools written 4 days ago by Marco • 20
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78
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Chip-seq IgG as control or Input DNA or usage of both
next-gen chip-seq sequencing written 5 days ago by luckysardar171 • 0
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52
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MultiBigwigSummary of deepTools keeps on running for a long time
multibigwigsummary chip-seq deeptools ubuntu written 6 days ago by saha.shagnik • 0
2
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1
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63
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1
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Interpreting ATAC-SEQ motif enrichment output
chip-seq atac-seq written 6 days ago by emalekos • 0 • updated 6 days ago by ATpoint ♦ 46k
2
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1
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60
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1
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Finding Fragment Size chip-seq paired end reads
chip-seq sequencing written 7 days ago by luckysardar171 • 0
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79
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Chip_seq analysis remove duplicates
chip-seq written 9 days ago by luckysardar171 • 0
0
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104
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0
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bigWig tracks inconsistent with MACS2 callpeak
macs2 chip-seq written 10 days ago by lida • 10
2
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2
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72
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2
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convert DNA FASTA file to RNA FASTA file
sequence chip-seq rna-seq written 10 days ago by xiaoleiusc • 70 • updated 10 days ago by JC ♦ 12k
14
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5 follow
2
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from txt to bed
chip-seq written 4.0 years ago by dimitrischat • 130 • updated 11 days ago by Biostar ♦♦ 20
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103
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Pair ended samples cannot map to the genome
chip-seq written 12 days ago by SayHey • 0
3
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1
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154
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1
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Major issue with DiffBind 3?
diffbind3 diffbind chip-seq bioconductor atac-seq written 4 weeks ago by musaddeque.ahmed • 20 • updated 12 days ago by Rory Stark • 920
18
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1
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3.6k
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6 follow
1
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Removal of repeat and blacklist regions from ChIP-seq data
blacklist encode chip-seq written 4.0 years ago by James Ashmore • 3.1k • updated 14 days ago by Biostar ♦♦ 20
0
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2
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263
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2
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Annotate peaks and G quadruplex
chip-seq written 9 months ago by ab2063 • 10 • updated 14 days ago by Rongxin • 30
2
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1
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4.3k
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1
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What Information Does The Encode Chip-Seq Peak File Contain
encode chip-seq written 9.7 years ago by Radhouane Aniba • 760 • updated 14 days ago by Biostar ♦♦ 20
4
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1
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82
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1
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Merging chip-seq samples sequenced in two different runs
chip-seq rna-seq written 15 days ago by srhic • 40 • updated 15 days ago by Carlo Yague ♦ 5.7k
0
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92
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Finding TBP binding sites on Chipseq Data
chip-seq written 18 days ago by majeedmj.ict • 10
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2
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858
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5 follow
2
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DiffBind error when calling dba.count
chip-seq written 9 months ago by aropri • 70 • updated 20 days ago by ThyShepherd • 0
1
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1
answer
84
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1
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No overlapping contigs found.
gatk chip-seq written 21 days ago by L_LANKA • 0
4
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1
answer
141
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5 follow
1
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How to check wether Chip-seq worked or not
alignment chip-seq sequencing written 22 days ago by luckysardar171 • 0 • updated 22 days ago by EagleEye ♦ 6.8k
0
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87
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Converting Bigwiggle (.bw) to bed
chip-seq written 22 days ago by Giulia • 0
0
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0
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91
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0
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Help me with ChromHMM
chip-seq written 22 days ago by Giulia • 0
1
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138
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5 follow
0
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How to remove illumina universal adapter
chip-seq rna-seq written 23 days ago by luckysardar171 • 0 • updated 23 days ago by GenoMax ♦ 96k
0
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81
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Comparing differentially expressed peaks to get unique values
genomic ranges chip-seq diffbind atac-seq written 23 days ago by rykerklie7 • 10
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88
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?Trimming advice with separate ChIP-seq experiments
trimming chip-seq written 23 days ago by drodavis0 • 0
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