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<prev • 2,109 results • page 1 of 71 • next >
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MACS2 result of FDR
false discovery rate macs2 chip-seq q-value written 3 hours ago by chaudharyc61 • 0 • updated 3 hours ago by genomax ♦ 68k
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Why Chip-seq data cross correlation plot has fragment_lenth cross correlation peak and read-length peaks
cross correlation chip-seq quality-control written 15 hours ago by harrypotterandsbt • 10
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macs2 callpeak results
callpeak macs2 chip-seq written 9 days ago by nehoralevi • 0 • updated 2 days ago by Biostar ♦♦ 20
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Is there any other tool to analysis Target gene based on Chip-seq and RNA-seq joint analysis result
joint-analysis chip-seq rna-seq written 3 days ago by harrypotterandsbt • 10
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Peak calling using spp package
peak calling chip-seq spp package written 3 days ago by chaudharyc61 • 0 • updated 3 days ago by Devon Ryan ♦ 90k
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Overlapping Peaks And Distance Between Them....
chip-seq written 8.1 years ago by Dataminer • 2.6k • updated 4 days ago by Biostar ♦♦ 20
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GO enrichment analysis from peaks to corresponding genes for each MSigDB Oncogenic Signatures or GO IDs using rGREAT
genes chip-seq rgreat msigdb oncogenic signatures written 9 days ago by Researcher • 30 • updated 7 days ago by jared.andrews07 • 2.5k
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Defining bivalent promoters with H3K4me3 and H3K27me3 ChIPseq data
chip-seq written 8 days ago by sikhtechai • 30
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Questions related to ChromHMM+using MACS2 peak calling output bed file as input for ChromHMM?
chip-seq macs2 chromhmm written 8 days ago by sikhtechai • 30 • updated 8 days ago by Ar • 860
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5 follow
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Tool: New ultraperformant version of SICER/epic: epic2
chip-seq tool written 6 months ago by endrebak852 • 100 • updated 9 days ago by Coralie • 0
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Question about ChromHMM overlap enrichment
chromhmm chip-seq segmentation written 12 months ago by nanoide • 30 • updated 10 days ago by Researcher • 30
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ChromHMM: chromatin states to genome % coverage?
chip-seq chromhmm written 2.3 years ago by Sy80 • 0 • updated 10 days ago by Researcher • 30
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ChromHMM - annotation of chromatin states
chip-seq chromatin segmentation chromhmm written 21 months ago by julia • 10 • updated 10 days ago by Researcher • 30
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Error in peak calling using SPP package
peak calling chip-seq spp written 13 days ago by chaudharyc61 • 0
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1
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121
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1
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Mapping Illumina reads against one single gene Vs whole genome
chip-seq iclip rna-seq written 13 days ago by praasu • 30 • updated 13 days ago by h.mon ♦ 26k
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to check allelic biases in histone peaks
chip-seq snp written 10 weeks ago by GK1610 • 60 • updated 13 days ago by Biostar ♦♦ 20
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uploading bigwig file (converted from BED) to UCSC genome browser: Unrecognized format line 1
software error assembly chip-seq written 16 days ago by chrisclarkson100 • 80 • updated 15 days ago by ruisergioluis • 20
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1
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109
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1
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How to bin my count data for the entire genome?
genome homer next-gen chip-seq sequencing written 15 days ago by fr • 100 • updated 15 days ago by Prakash • 1.2k
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Page: Introduction to Bioinformatics - Introductory Online Courses in Transcriptomics, Genomics, Epigenomics and Metagenomics
genome page alignment chip-seq rna-seq written 15 days ago by elia.brodsky • 310
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Where to download blacklisted regions?
blacklist chip-seq written 3.5 years ago by saravanakumar992 • 50 • updated 15 days ago by geocarvalho • 110
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315
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Paired end peak callers
chip-seq written 3 months ago by Dataminer • 2.6k • updated 16 days ago by mc2548 • 0
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Why ranges of narrowPeak file and that of bed file are not identical
macs2 chip-seq sequencing written 18 days ago by Wang • 0 • updated 18 days ago by ATpoint ♦ 18k
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MACS2 result analysis
peak calling macs2 chip-seq tool written 19 days ago by chaudharyc61 • 0 • updated 19 days ago by ATpoint ♦ 18k
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How to compute average methylation among multiple sites given raw sequencing reads
R chip-seq methylation written 4.1 years ago by zhourudy2 • 0 • updated 19 days ago by feljpants • 0
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Overlapping regions in a BedGraph file
gro-seq bedgraph chip-seq deeptools written 3.5 years ago by Sam • 70 • updated 20 days ago by Simply Bioinformatics • 150
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Job: Postdocs/Scientists: Long Reads, Epigenomes and Human Diseases
epigenomics chip-seq long reads rna-seq job written 7 weeks ago by fanggang • 80
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1
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147
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Can HOMER be used to predict the binding site of a transcription factor on a DNA sequence?
genome gene chip-seq rna-seq homer written 23 days ago by charlesgwellem • 0 • updated 22 days ago by Alex Reynolds ♦ 28k
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NGS apps license compliance
genome assembly chip-seq rna-seq sequencing written 23 days ago by debc63 • 10
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110
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1
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How to properly organize a DiffBind analysis to normalize data across conditions (ChIP-seq)
R diffbind chip-seq written 24 days ago by msimmer92 • 190 • updated 24 days ago by ATpoint ♦ 18k
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5 follow
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Hisat2 aligner problem
software error assembly alignment chip-seq rna-seq written 27 days ago by ta_awwad • 210
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