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<prev • 2,255 results • page 1 of 76 • next >
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meaning of "Total subpeaks" in Homer's mergePeaks?
homer chip-seq atac-seq written 11 hours ago by fr • 120
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chromHMM segmented genome annotation for genes
chip-seq written 12 hours ago by elb • 170
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Transcription factor target gene
chip-seq written 22 hours ago by arifur.bpharm • 0 • updated 20 hours ago by michael.ante • 3.5k
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46
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Clustering intervals of a dataset
chip-seq written 1 day ago by dimitrischat • 90
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127
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Whole-genome percentile values in bigWig files
chip-seq wiggle bigwig statistics written 3 days ago by rachel • 10 • updated 3 days ago by Alex Reynolds ♦ 29k
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ChIP-seq lack of nucleosome depleted region
genome assembly chip-seq sequencing written 3 days ago by bweekley • 0
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Determining LAD boundaries
chip-seq damid written 4 days ago by rishi • 10
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6 follow
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Correlation of two ChIP-seq signals?
chip-seq written 5 days ago by biostart • 320
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63
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Empty output when use HOMER annotatePeak.pl
software error chip-seq written 5 days ago by deb0612 • 0
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104
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5 follow
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Tool: SparK - A Publication-Quality NGS data plotting tool
ngs chip-seq tool rna-seq written 6 days ago by Stefan.Kurtenbach • 30
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Size of Output BAM file bigger than the SUM Size of Input files after merging with samtools
chip-seq samtools written 14 days ago by Giggle • 0 • updated 7 days ago by jkbonfield • 220
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123
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6 follow
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Plot read density across a normalized gene model for its each exon/intron length
deeptools next-gen chip-seq R python written 7 days ago by kashiff007 • 130 • updated 7 days ago by benformatics • 1.2k
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Differential binding with SICER/epic2
epic2 chip-seq differential binding sicer written 8 days ago by i.am.filippov • 0
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From where to get Sub-telomeric Region Coordinates/ sequences for each chromosome
genome gene chip-seq assembly written 8 days ago by rohitsatyam102 • 60
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How do I compute the effective genome size?
chip-seq written 4.3 years ago by Endre Bakken Stovner • 880 • updated 10 days ago by Biostar ♦♦ 20
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Explanation of ENCODE SCREEN candidate cis-Regulatory elements classification
chip-seq written 11 days ago by yztxwd • 240
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108
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1
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How to view bigwig files in UCSC with windowed coverage?
atacseq chip-seq ucsc written 14 days ago by fr • 120 • updated 14 days ago by Kevin Blighe ♦ 52k
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140
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convert it to a fasta file?
next-gen chip-seq rna-seq sequencing written 15 days ago by wngusgus1004 • 0
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How much memory / how many cores should I request for peak calling?
slurm chip-seq written 15 days ago by jrleary • 30 • updated 15 days ago by genomax ♦ 75k
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14 follow
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Tutorial: Using EnrichedHeatmap for visualization of NGS experiments
tutorial enrichedheatmap chip-seq atac-seq heatmap written 3 months ago by ATpoint ♦ 26k
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129
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1
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Looking for advise on histone modification chip-seq analysis - 2 conditions
chip-seq written 26 days ago by mariana1988 • 0
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124
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1
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ENSEMBL annotation of genes start with "Gm" end with "Rik"
gene chip-seq rna-seq written 20 days ago by SMILE • 120 • updated 20 days ago by Emily_Ensembl ♦ 20k
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How should I use skewer to trim paired end reads?
skewer chip-seq written 24 days ago by jrleary • 30
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How to find upregulated and downregulated genes for my microarray data with limma
R next-gen chip-seq microarray rna-seq written 27 days ago by koushik.vf09 • 10 • updated 27 days ago by Kevin Blighe ♦ 52k
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122
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1
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GC bias correction for Chip-SEQ
gc chip-seq ngs written 5 weeks ago by Farron16 • 10 • updated 27 days ago by ATpoint ♦ 26k
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9 follow
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Tool: Automatic IGV snapshot script
tutorial chip-seq tool igv written 2.8 years ago by steve • 2.4k • updated 29 days ago by danielaperry2015 • 0
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To create a GDS file from bed, bim and fan file.
chip-seq written 3.8 years ago by Maneesh.Misra • 0 • updated 29 days ago by Biostar ♦♦ 20
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[diffbind] error when running dba.count
R chip-seq written 5 weeks ago by Kathy • 0
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8 follow
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Chip-Seq Data Analysis, Newbie To Do Steps
analysis chip-seq written 8.5 years ago by Patrick • 40 • updated 4 weeks ago by Biostar ♦♦ 20
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I am trying to get the promoters of a set of differentially expressed genes
chip-seq rna-seq written 4 weeks ago by Fawzi Yassine • 10
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