Showing: chip-seqreset
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96
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 2.3 years ago by Sinji2.6k • updated 5 months ago by chiefcat70
43
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6
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8.2k
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33 follow
6
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41
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0
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28k
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25 follow
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Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
chip-seq tutorial bigwig visualization rna-seq ucsc written 6.2 years ago by Sukhdeep Singh9.3k • updated 2.4 years ago by Shicheng Guo4.9k
39
votes
6
answers
16k
views
20 follow
6
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How To Do Normalization Of Two Chip-Seq Data?
bioinformatics chip-seq written 6.2 years ago by yatung180 • updated 3.6 years ago by ritarebollo60
28
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4
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6.4k
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19 follow
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ChIP-Seq: Calling peaks with replicates
replicates peak calling chip-seq written 3.8 years ago by dariober9.1k • updated 3.7 years ago by Michele Busby1.8k
38
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2
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24k
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18 follow
2
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What Control For Chip-Seq: Input, Igg Or Untagged Strain?
chip-seq written 6.5 years ago by Olbzn170 • updated 6.5 years ago by Ying W3.8k
21
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4
answers
4.2k
views
16 follow
4
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P Value Or Statistical Significance Of Real Peak Compared To Random Peak Overlaps
chip-seq written 5.3 years ago by biorepine1.4k • updated 19 months ago by i.sudbery2.3k
32
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3
answers
12k
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15 follow
3
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How Do You Calculate If Two Sets Of Genomic Regions Overlap Significantly?
bed chip-seq coverage statistics written 7.4 years ago by Stew1.4k • updated 7 weeks ago by Hmd10
14
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6
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8.2k
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14 follow
6
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Plotting Reads Around Tss
chip-seq written 4.7 years ago by ChIP480 • updated 3.0 years ago by Ram110
24
votes
5
answers
7.2k
views
14 follow
5
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How To Randomly Sample A Subset Of Lines From A Bed File
bed chip-seq written 4.6 years ago by bede.portz470 • updated 4.0 years ago by monique.sakalidis0
33
votes
10
answers
10k
views
13 follow
10
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Which Chip Seq Peak Callers Do You Use?
chip-seq peak-calling written 8.2 years ago by Stew1.4k • updated 15 months ago by macmath130
13
votes
5
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10k
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13 follow
5
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Software To Find Overlaps Of Chip-Seq Peaks In Multiple Samples.
seq chip-seq written 5.6 years ago by pmoney180 • updated 5.6 years ago by Mikael Huss4.6k
27
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3
answers
5.0k
views
13 follow
3
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How Do You Decide When A Sequencing Run Is Too Bad To Have Reliable Information?
chip-seq written 5.1 years ago by KCC3.9k • updated 4.4 years ago by Biostar ♦♦ 20
18
votes
4
answers
1.2k
views
13 follow
4
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Visualization for ChIP-seq analysis
differential analysis motif detection chip-seq written 8 months ago by nvucic30 • updated 8 months ago by simon.vanheeringen150
32
votes
3
answers
7.5k
views
12 follow
3
answers
32
votes
4
answers
6.9k
views
12 follow
4
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How To Assign A Chip-Chip/Chip-Seq Peak To A Target Gene?
papers chip-seq target written 7.4 years ago by Casey Bergman17k • updated 7.4 years ago by 2184687-1231-83-4.9k
21
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5
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7.9k
views
12 follow
5
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25
votes
6
answers
8.0k
views
11 follow
6
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Tools For Chipseq Scale Motif Finding?
motif chip-seq written 8.2 years ago by Cassj1.3k • updated 8.2 years ago by Jacques Van Helden10
14
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6
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2.7k
views
11 follow
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Drawing ChIPseq graphics
chip-seq plots written 3.9 years ago by NHEJ270 • updated 3.8 years ago by Ming Tang2.3k
21
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6
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7.3k
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10 follow
6
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Chip Seq Data Analysis
galaxy chip-seq written 7.2 years ago by Dataminer2.5k • updated 4.4 years ago by bede.portz470
23
votes
3
answers
3.5k
views
10 follow
3
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A General Evaluation Of Chipseq Data
quality chip-seq written 6.3 years ago by Hamilton260 • updated 3.3 years ago by Biostar ♦♦ 20
14
votes
4
answers
4.2k
views
10 follow
4
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Constructing An Heatmap Of "Distance Of Binding Region Relative To Tss"
next-gen chip-seq written 6.0 years ago by Dataminer2.5k • updated 6.0 years ago by Leonor Palmeira3.6k
13
votes
2
answers
5.5k
views
10 follow
2
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Peak Finding Of Chip-Seq (Or Clip-Seq) And Poisson Distribution, Am I Right?
chip-seq written 5.3 years ago by Puriney330 • updated 5.3 years ago by KCC3.9k
15
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3
answers
398
views
10 follow
3
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16
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4
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9.3k
views
9 follow
4
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How To Combine Multiple Wig/Bigwig Files Into One
wiggle format chip-seq conversion ucsc written 7.5 years ago by Yuan30 • updated 7.5 years ago by Anders Haakonsson60
18
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4
answers
3.4k
views
9 follow
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How About Starting A Tutorial For Chip Seq Data Analysis?
next-gen chip-seq sequencing written 7.0 years ago by Dataminer2.5k • updated 3.2 years ago by Nowlan Freese820
14
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3
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4.4k
views
9 follow
3
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Generating Mappability Files
chip-seq written 6.6 years ago by Ying W3.8k • updated 16 months ago by inesdesantiago140
14
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3
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6.3k
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9 follow
3
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Correlation For Chip-Seq Data In R -Input Data Format
correlation chip-seq heatmap written 6.3 years ago by Bcw60 • updated 3.3 years ago by inesdesantiago140
9
votes
1
answer
8.2k
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9 follow
1
answer
Plotting Read Density/ Distribution/ Composite Profiles [Chip-Seq]
R ngs chip-seq written 6.0 years ago by Sukhdeep Singh9.3k • updated 4.1 years ago by kanwarjag890
9
votes
6
answers
5.2k
views
9 follow
6
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Best Tools For Motif Finding And/Or De Novo Motif Discovery?
chip-seq motif genomics written 5.9 years ago by enricoferrero740 • updated 3.7 years ago by sascha-ott10
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