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44
votes
0
answers
30k
views
27 follow
0
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Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
chip-seq tutorial bigwig visualization rna-seq ucsc written 6.7 years ago by Sukhdeep Singh9.5k • updated 2.9 years ago by Shicheng Guo7.3k
33
votes
2
answers
27k
views
2
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merge large amount of fastq files into a single one
fastq chip-seq written 3.7 years ago by catherine12243100 • updated 3.7 years ago by Pierre Lindenbaum115k
38
votes
2
answers
26k
views
18 follow
2
answers
What Control For Chip-Seq: Input, Igg Or Untagged Strain?
chip-seq written 7.0 years ago by Olbzn170 • updated 7.0 years ago by Ying W3.9k
13
votes
1
answer
25k
views
1
answer
Drawing venn diagram in R
venn diagram chip-seq forum written 3.6 years ago by Rashedul Islam290 • updated 3.6 years ago by TriS3.5k
99
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7
answers
19k
views
61 follow
7
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 2.8 years ago by Sinji2.7k • updated 11 months ago by chiefcat70
39
votes
6
answers
17k
views
20 follow
6
answers
How To Do Normalization Of Two Chip-Seq Data?
bioinformatics chip-seq written 6.7 years ago by yatung180 • updated 4.1 years ago by ritarebollo60
25
votes
4
answers
15k
views
4
answers
ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 2.3 years ago by igor7.1k • updated 7 months ago by ZheFrench150
12
votes
6
answers
13k
views
7 follow
6
answers
Find Out The Genes That Correspond To My Coordinates
chip-seq exon peak-calling intron written 6.5 years ago by e.karasmani120 • updated 6.5 years ago by Ian5.3k
13
votes
2
answers
13k
views
6 follow
2
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Bedgraph To Bed
chip-seq conversion written 7.4 years ago by Ying W3.9k • updated 7.4 years ago by Ryan Dale4.8k
32
votes
3
answers
12k
views
15 follow
3
answers
How Do You Calculate If Two Sets Of Genomic Regions Overlap Significantly?
bed chip-seq coverage statistics written 7.8 years ago by Stew1.4k • updated 7 months ago by Hmd10
0
votes
1
answer
12k
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1
answer
Bowtie2 (ERR): bowtie2-align exited with value 1
bowtie2 alignment chip-seq written 2.8 years ago by s-root0 • updated 11 weeks ago by RamRS19k
13
votes
6
answers
12k
views
7 follow
6
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Output Of Chip-Seq Data Analysis Using Macs
macs chip-seq written 5.9 years ago by Vikas Bansal2.3k • updated 3.9 years ago by muhe198510
13
votes
5
answers
11k
views
13 follow
5
answers
Software To Find Overlaps Of Chip-Seq Peaks In Multiple Samples.
seq chip-seq written 6.1 years ago by pmoney180 • updated 6.1 years ago by Mikael Huss4.6k
33
votes
10
answers
11k
views
13 follow
10
answers
Which Chip Seq Peak Callers Do You Use?
chip-seq peak-calling written 8.7 years ago by Stew1.4k • updated 21 months ago by macmath130
11
votes
1
answer
11k
views
1
answer
8
votes
1
answer
10k
views
1
answer
NarrowPeak format of ChiP-seq
tag density chip-seq written 4.5 years ago by liu4gre190 • updated 4.5 years ago by Sukhdeep Singh9.5k
10
votes
4
answers
10k
views
6 follow
4
answers
Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
sra samtools sam chip-seq written 4.8 years ago by bede.portz470 • updated 10 months ago by Biostar ♦♦ 20
10
votes
2
answers
10k
views
6 follow
2
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Loading Large Bed Files Into Bioconductor
bioconductor chip-seq written 5.2 years ago by danielcook201360 • updated 2.5 years ago by ATpoint11k
17
votes
4
answers
9.9k
views
11 follow
4
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How To Combine Multiple Wig/Bigwig Files Into One
wiggle format chip-seq conversion ucsc written 8.0 years ago by Yuan40 • updated 8.0 years ago by Anders Haakonsson60
11
votes
2
answers
9.1k
views
2
answers
Error in creating BAM index
chip-seq rna-seq written 4.0 years ago by Constantine210 • updated 2.7 years ago by ks20
19
votes
3
answers
9.1k
views
9 follow
3
answers
Chipseq Wig File With The Input Subtracted From Chip Sample
wiggle chip-seq written 6.4 years ago by Shumon110 • updated 5.0 years ago by Fidel1.8k
44
votes
6
answers
9.1k
views
35 follow
6
answers
15
votes
3
answers
8.9k
views
8 follow
3
answers
Is There Any Advantage Of Paired End Sequencing For Chip-Seq?
paired-end chip-seq written 5.7 years ago by Fidel1.8k • updated 5.7 years ago by Ian5.3k
14
votes
6
answers
8.8k
views
14 follow
6
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Plotting Reads Around Tss
chip-seq written 5.2 years ago by ChIP490 • updated 3.5 years ago by Ram130
9
votes
1
answer
8.8k
views
9 follow
1
answer
Plotting Read Density/ Distribution/ Composite Profiles [Chip-Seq]
R ngs chip-seq written 6.5 years ago by Sukhdeep Singh9.5k • updated 4.6 years ago by kanwarjag910
4
votes
2
answers
8.6k
views
2
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Hardware requirements for NGS analysis
next-gen alignment chip-seq rna-seq written 3.9 years ago by eb090610 • updated 2.3 years ago by Biostar ♦♦ 20
25
votes
6
answers
8.4k
views
11 follow
6
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Tools For Chipseq Scale Motif Finding?
motif chip-seq written 8.7 years ago by Cassj1.3k • updated 8.7 years ago by Jacques Van Helden10
25
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7
answers
8.4k
views
7
answers
venndiagram for 6 sets
R next-gen chip-seq statistics written 2.7 years ago by mary9980 • updated 4 weeks ago by lieven.sterck3.3k
9
votes
1
answer
8.4k
views
1
answer
Chip-Seq Normalization
data chip-seq written 7.4 years ago by Repineme110 • updated 4.2 years ago by Biostar ♦♦ 20
18
votes
4
answers
8.4k
views
5 follow
4
answers
How To Plot Read Coverage Over Many Different Genomic Regions?
chip-seq coverage written 5.9 years ago by Ian5.3k • updated 4.7 years ago by Fidel1.8k
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