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Forum: want to work in open source project/project in bioinformatics
bioinformatics project
updated 4 days ago by 4.2k • written 4 days ago by • 0
1
vote
4
replies
597
views
Forum: Current Trends in Bioinformatics
structural-bioinformatics
updated 6 days ago by 78k • written 23 days ago by • 0
21
votes
11
replies
2.0k
views
6 follow
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
updated 8 days ago by 22k • written 8 months ago by ▴ 140
175
votes
46
replies
18k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
10 days ago by Istvan Albert 99k
3
votes
2
replies
369
views
Forum: RNA-Seq data analysis - question
Python RNA-Seq R
updated 22 days ago by ▴ 10 • written 23 days ago by ▴ 30
0
votes
0
replies
179
views
Forum: How to learn bioinformatics online?
self-education education learning
updated 28 days ago by 41k • written 29 days ago by • 0
6
votes
5
replies
2.0k
views
Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
4 weeks ago by tshtatland ▴ 180
7
votes
9
replies
1.1k
views
6 follow
Forum: Mentor for a beginner bioinformatics student
project mentor
4 weeks ago by UT_FAN ▴ 40
0
votes
0
replies
206
views
Forum: Steps after doublet detection in single cell data
scRNA doublet
7 weeks ago by ishwarvh • 0
0
votes
0
replies
186
views
Forum: Automated Checks And QA
retrospective
7 weeks ago by Sasha ▴ 760
7
votes
13
replies
957
views
Forum: How do you validate and verify your pipeline's software updates?
Validation Verification Quality-Assurance
updated 5 weeks ago by 41k • written 8 weeks ago by ▴ 10
21
votes
7
replies
11k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 8 weeks ago by ▴ 100 • written 7.6 years ago by 11k
3
votes
3
replies
572
views
Forum: Importance of Data Structures for Bioinformatics?
data-structures
updated 9 weeks ago by 41k • written 10 weeks ago by • 0
19
votes
14
replies
1.4k
views
Forum: What is the amount of sequencing data produced annually?
data research sequencing
updated 10 weeks ago by 22k • written 10 weeks ago by ▴ 70
19
votes
10
replies
1.2k
views
Forum: Pain points using commercial clouds
gpt tinybio
updated 10 weeks ago by ▴ 70 • written 3 months ago by ▴ 760
9
votes
6
replies
1.5k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 11 weeks ago by 78k • written 12 months ago by ▴ 30
3
votes
2
replies
414
views
Forum: How to contribute to the next edition of Biostars Handbook
handbook
updated 11 weeks ago by 41k • written 12 weeks ago by ▴ 20
3
votes
6
replies
975
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
3 months ago by anasjamshed ▴ 120
2
votes
5
replies
714
views
6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 6 weeks ago by 41k • written 3 months ago by • 0
2
votes
9
replies
872
views
Forum: open source projects looking for contributors
open-source
updated 11 weeks ago by ▴ 70 • written 3 months ago by ▴ 20
0
votes
0
replies
372
views
Forum: Recruiters: what do you expect on a junior bioinformatician?
career skills
updated 3 months ago by 41k • written 3 months ago by ▴ 20
3
votes
4
replies
726
views
Forum: Discussion: Uploading terabytes of data to NCBI SRA
NCBI WGS archiving servers remote
updated 3 months ago by 136k • written 3 months ago by ▴ 130
0
votes
0
replies
327
views
Forum: I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 3 months ago by 41k • written 3 months ago by ▴ 10
1
vote
3
replies
546
views
Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 3 months ago by 136k • written 3 months ago by ▴ 550
11
votes
8
replies
949
views
6 follow
Forum: How to write a review article in bioinformatics
article review
updated 3 months ago by 41k • written 3 months ago by ▴ 10
361
votes
58
replies
66k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
education books
updated 6 weeks ago by 41k • written 13.7 years ago by 99k
1
vote
2
replies
9.8k
views
Forum: Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear latent batch-effect variable GLM
4 months ago by LauferVA 3.8k
0
votes
3
replies
3.7k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 12 months ago by ▴ 120
2
votes
3
replies
588
views
Forum: Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 4 months ago by 136k • written 4 months ago by 3.8k
0
votes
2
replies
797
views
Forum: [Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 5 months ago by 10k • written 5 months ago by • 0
33
votes
23
replies
3.4k
views
8 follow
Forum: Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF file-format genomics
updated 5 months ago by 22k • written 5 months ago by 3.8k
7
votes
8
replies
1.3k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
5 months ago by K • 0
2
votes
3
replies
646
views
Forum: Mapping a predicted sequence to a genome
predicted map alignment sequence
updated 5 months ago by ★ 25k • written 5 months ago by • 0
0
votes
0
replies
317
views
Forum: Recommendation sought for differential exon usage of a single gene
splicing differential-exon-usage
updated 5 months ago by 41k • written 5 months ago by ▴ 10
7
votes
4
replies
862
views
Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 5 months ago by 41k • written 5 months ago by 3.8k
2
votes
2
replies
442
views
Forum: Colleges
Colleges india universities
updated 6 months ago by 41k • written 6 months ago by • 0
19
votes
15
replies
1.7k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 6 months ago by 41k • written 5.5 years ago by 5.3k
120
votes
33
replies
38k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 6 months ago by ★ 2.4k • written 10.3 years ago by 11k
100
votes
38
replies
29k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 7 days ago by 22k • written 10.0 years ago by ★ 3.6k
26
votes
12
replies
7.2k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 6 months ago by ▴ 10 • written 10.1 years ago by ▴ 50
0
votes
2
replies
616
views
Forum: How to start in bioinformatics?
career
updated 6 months ago by 41k • written 7 months ago by • 0
3
votes
4
replies
1.0k
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
7 months ago by cwaingartentrabajo • 0
12
votes
5
replies
1.5k
views
6 follow
Forum: Bioinformatics opportunities in Europe?
career
updated 7 months ago by ▴ 40 • written 7 months ago by • 0
18
votes
14
replies
1.6k
views
7 follow
Forum: What's the general view on point & click bioinformatics for routine analyses?
ngs RNA-Seq next-gen-sequencing
7 months ago by Simon ▴ 40
0
votes
0
replies
6.9k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
7 months ago by Alexandre Eeckhoutte • 0
11
votes
11
replies
1.4k
views
7 follow
Forum: Any tips in landing a bioinformatic job?
Spain R
updated 8 months ago by 3.8k • written 8 months ago by ▴ 30
4
votes
2
replies
564
views
Forum: advice on course selection for a bioinformatics career.
career
updated 8 months ago by 99k • written 8 months ago by • 0
0
votes
1
reply
434
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 8 months ago by 136k • written 8 months ago by • 0
4
votes
1
reply
635
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 8 months ago by 136k • written 8 months ago by 5.7k
5
votes
3
replies
757
views
Forum: Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 8 months ago by 21k • written 8 months ago by ▴ 70
1,000 results • Page 1 of 20
Recent Votes
Comment: Tools or R / Python packages to perfom ML models
Comment: How can I amend the output of a DIAMOND python script?
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp
A: How to add biological annotations using R
Answer: Mapping quality in `vg giraffe`
Answer: Mapping quality in `vg giraffe`
Answer: Comparing 3 Data Sets using DeSeq and Heatmaps
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Recent Replies
Answer: Tools or R / Python packages to perfom ML models by Michael 53k
How about TensorFlow? https://www.tensorflow.org/overview You can run the examples directly in Colab. This short introduction uses Ke…
Comment: In what case there are RR reads but no LL reads when detect inversions using IGV by Istvan Albert 99k
you should visualize the image as pairs (view-as-pairs) the image you show is not quite right, it is also important to note what gets color…
Comment: Tools or R / Python packages to perfom ML models by sil_bioinfo ▴ 30
Hi, I'm more comfortable with R right now. I found the R package "mlr3", I don't know if you know of any others. I would appreciate it if y…
Comment: HTseq reports missing attribute name by Istvan Albert 99k
sounds like your genome file is not quite correct, you need to make sure it is in FASTA format all the way through, perhaps get it from a r…
Comment: Can you help me to download list of miRNA from a SRA under a bioproject ? by ATpoint 78k
I it was available then you would see entries there. Still, be aware that this is raw sequencing data, so it's not just a list of miRNAs. C…
Comment: Tools or R / Python packages to perfom ML models by rpolicastro 12k
R and Python have access to most ML methods, it's just a matter of learning either of the languages and then finding which libraries are po…
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp by ATpoint 78k
Seconding that. Is there anything else that you can use for QC, like some Trypan Blue stain of the cells right before loading the chip? Is …
Comment: Where is the index command? by Michael 53k
samtools index (like genral programs you install on your machine) should run without sudo, if it doesn't, you might want to check the acces…
Comment: Where is the index command? by Michael 53k
I didn't know you were using WSL. Possibly the damage you can do with that is limited to the WSL environment and the worst thing that can h…
Comment: Is bisulfite-seq data from different studies comparable with each other? by Basti ★ 1.8k
There is no general rule, what you can apply depends on the nature of each dataset you intend to integrate (tissue, condition, technique, s…
Comment: Where is the index command? by Michael 53k
Running this is always a good idea.
Answer: Salmon indices differences by ATpoint 78k
In theory the full genome decoy is the best since it includes the entire genome, hence decoying potential spurious mappings due to DNA cont…
Comment: Can you help me to download list of miRNA from a SRA under a bioproject ? by Nitin Narwade ★ 1.5k
You can directly ask authors but as it is still on bioRxiv I don't think they can share this data with you until it get published somewhere…
Comment: Can you help me to download list of miRNA from a SRA under a bioproject ? by abourrieau • 0
Thank you, I had thought about this possibility but I don't see where it is indicated on the NCBI website: : https://www.ncbi.nlm.nih.gov/b…
Comment: Cellcyclescoring did not work in Seurat V5 by fracarb8 ★ 1.3k
You can try to merge the layer together with `data.filt <- JoinLayers(data.filt)`
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