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1,000 results • Page 1 of 20
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10
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461
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7 follow
Forum: Any tips in landing a bioinformatic job?
Spain R
1 day ago by Jorge ▴ 30
100
votes
36
replies
27k
views
33 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 9 days ago by ▴ 30 • written 9.4 years ago by ★ 3.6k
4
votes
2
replies
181
views
Forum: advice on course selection for a bioinformatics career.
career
updated 10 days ago by 97k • written 10 days ago by • 0
0
votes
1
reply
170
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 22 days ago by 127k • written 22 days ago by • 0
3
votes
1
reply
202
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 22 days ago by 127k • written 22 days ago by 4.6k
5
votes
3
replies
346
views
Forum: Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 24 days ago by 20k • written 24 days ago by ▴ 60
18
votes
10
replies
779
views
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
25 days ago by bompipi95 ▴ 120
1
vote
0
replies
135
views
Forum: Penetrance versus heritability
penetrance heritability
25 days ago by tacrolimus ▴ 110
10
votes
15
replies
850
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta ucsc-genome-browser
4 weeks ago by Maximilian Haeussler ★ 1.5k
8
votes
4
replies
382
views
Forum: Implementing FAIR data principles to a bioinformatics lab
data
updated 5 weeks ago by 21k • written 5 weeks ago by ★ 1.5k
0
votes
0
replies
166
views
Forum: NGSrich - hg38
Coverage NGSrich
5 weeks ago by RK • 0
5
votes
5
replies
520
views
Forum: Bioinformatics - how to start?
molecular-biology
updated 6 weeks ago by ★ 23k • written 6 weeks ago by • 0
8
votes
8
replies
1.1k
views
7 follow
Forum: A Computer Scientist who wants to start Bioinformatics
computer-science books resources ngs
updated 8 weeks ago by ▴ 10 • written 3 months ago by • 0
7
votes
3
replies
562
views
Forum: Find a research paper for reproducing the results
research paper
updated 11 weeks ago by 127k • written 11 weeks ago by ★ 2.5k
0
votes
1
reply
340
views
Forum: Gene ontology vs Gene set enrichment
set enrichment GSEA ontology Gene analysis gene
updated 3 months ago by ★ 1.7k • written 3 months ago by • 0
6
votes
12
replies
860
views
Forum: How to decide when to have local hardware vs cloud computing?
hardware computational-resources cloud
3 months ago by Lluís R. ★ 1.2k
15
votes
10
replies
1.6k
views
6 follow
Forum: BioStars and ChatGPT
ChatGPT Meta GPT
updated 3 months ago by 2.2k • written 3 months ago by ▴ 320
18
votes
10
replies
1.1k
views
7 follow
Forum: Add artificial intelligence training related disclaimers to your profile
licensing AI
updated 3 months ago by 52k • written 3 months ago by 97k
0
votes
2
replies
2.7k
views
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
4 months ago by SushiRoll ▴ 100
7
votes
2
replies
379
views
Forum: Improvement of Wikipedia articles with bioinformatic subjects
Wikipedia Bioinformatics
9 weeks ago by Matthias Zepper 3.4k
5
votes
4
replies
544
views
Forum: Best BAM viewer in 2022
bam sam tool-recommendation
4 months ago by Cornelius ▴ 60
1.2k
votes
205
replies
48k
views
107 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 10 weeks ago by ▴ 250 • written 12.0 years ago by 21k
8
votes
4
replies
544
views
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
4 months ago by dlaehnemann ▴ 10
10
votes
13
replies
1.4k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 4 months ago by 5.9k • written 4 months ago by ▴ 10
0
votes
2
replies
539
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 3 months ago by 38k • written 6 months ago by • 0
4
votes
5
replies
598
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
bioifnormatics masters
updated 5 months ago by ▴ 100 • written 5 months ago by • 0
1
vote
1
reply
441
views
Forum: Package is not available (for R version XXX)？ Manually download and install R packages
installation package R
updated 12 weeks ago by 4.6k • written 5 months ago by ▴ 30
3
votes
6
replies
557
views
Forum: How to become a moderator and other ways of contributing to Biostars
biostars
5 months ago by iraun 5.9k
2
votes
3
replies
462
views
Forum: Experiences with different cloud computing resources / providers
cloud pipeline rna-seq alignment
updated 6 months ago by 21k • written 6 months ago by ▴ 10
19
votes
13
replies
1.3k
views
8 follow
Forum: Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 6 months ago by 5.9k • written 6 months ago by ▴ 40
8
votes
13
replies
1.4k
views
8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 6 months ago by • 0 • written 6 months ago by ★ 1.2k
4
votes
4
replies
794
views
Forum: Bioinformatics analogies
Bioinformatics
updated 6 months ago by 97k • written 7 months ago by ▴ 40
2
votes
4
replies
673
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 4 days ago by 38k • written 7 months ago by ▴ 210
2
votes
4
replies
496
views
Forum: strand specific data
strand DNA RNA specific coding
7 months ago by upasana • 0
3
votes
0
replies
370
views
Forum: Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology RTK IC50 TKI database
7 months ago by Vincent Laufer ★ 2.6k
7
votes
14
replies
1.5k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 7 months ago by 2.2k • written 7 months ago by ▴ 80
4
votes
4
replies
906
views
Forum: Cloud Computing Services available?
resources Cloud-Computing
updated 3 months ago by 38k • written 9 months ago by ★ 2.3k
2
votes
7
replies
815
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 8 months ago by 38k • written 8 months ago by ▴ 20
6
votes
3
replies
922
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 8 months ago by 3.4k • written 8 months ago by 16k
0
votes
1
reply
339
views
Forum: Add an intercept column to a bed file
plink intercept bed
updated 8 months ago by 71k • written 8 months ago by • 0
4
votes
2
replies
1.5k
views
Forum: Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology teaching
updated 3 months ago by 38k • written 8 months ago by ★ 2.6k
0
votes
0
replies
361
views
Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
8 months ago by goddy93 • 0
3
votes
1
reply
400
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 8 months ago by 38k • written 8 months ago by • 0
5
votes
2
replies
631
views
Forum: Skills for industry career in bioinformatics
industry
updated 8 months ago by 11k • written 8 months ago by ▴ 10
9
votes
6
replies
762
views
Forum: Programming languages in industry
programming language
updated 8 months ago by 9.5k • written 8 months ago by ▴ 30
2
votes
6
replies
753
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
9 months ago by Antonio R. Franco ★ 5.1k
1
vote
0
replies
365
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
9 months ago by Francesco ▴ 20
3
votes
2
replies
530
views
Forum: From protein-protein interaction networks to..
limitations tools knowledge computational workflow
9 months ago by BioInfoBeginner ▴ 50
0
votes
0
replies
414
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf bcftools genotypes
updated 3 months ago by 38k • written 9 months ago by ▴ 30
24
votes
6
replies
4.2k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 4 months ago by 38k • written 4.6 years ago by ★ 9.3k
1,000 results • Page 1 of 20
Recent Votes
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
SSPACE for scaffolding
Answer: Snakemake workflow for trimmomatic
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
A: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p
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Recent Replies
Comment: TCGA-BRCA tissue and RNAseq problem by pinheirofabiano ▴ 10
Go to https://portal.gdc.cancer.gov > Exploration > select TCGA and the cancer type you want > select case ID to download the files and hav…
Answer: Snakemake workflow for trimmomatic by antoine.fauchois92 • 0
Thank you very much for your reply ! It's working now !
Comment: Dependent p values by Eliza ▴ 20
@lchart I'm sorry for asking another of questions but I'm new to this field , can you please explain a little more how to use SKAT , saige…
Comment: How to deal with the probe id mapping to multiple gene ids? by dare_devil ★ 1.7k
similar question [here][1], [here][2] and [here][3] [1]: https://support.bioconductor.org/p/54838/ [2]: https://support.bioconductor.…
Comment: How to deal with the probe id mapping to multiple gene ids? by dare_devil ★ 1.7k
@genomax I have used the same platform file only. If you look at probe id and their corresponding `Gene Symbol` or `ENTREZ_GENE_ID` you can…
Comment: How to deal with the probe id mapping to multiple gene ids? by GenoMax 127k
Where are you seeing this? [Platform file for this array][1] on GEO has these names uniquely assigned. [1]: https://www.ncbi.nlm.nih.go…
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL by rpolicastro 11k
`Org.Mm.eg.db` is the mouse organism database, but your ENSEMBL IDs are for human genes. Mouse ensembl ids start with `ENSMUSG`. You proba…
Comment: Snakemake doesn't recognize output files even though they are created by DdogBoss • 0
Yes, it completed the dry run. What other information do you need?
Comment: LDSC correlation calculate confidence intervals by YL ▴ 10
Based on my personal thought, I think the se from LDSC output probably needs to be transferred using Delta method based on Fisher transform…
Comment: LDSC correlation calculate confidence intervals by YL ▴ 10
Hi, Are you able to find an answer for this? I have the exact question! YL
Answer: Gene duplicate by ATpoint 71k
Use use ensembID_geneName as gene identifier to avoid that. These duplicate names exist as genes so removing them is somewhat not really da…
Comment: Gene duplicate by Ram 38k
> some Ensembl IDs that are the same Please show us some examples.
Comment: R package for functional enrichment and depletion analysis by rpolicastro 11k
What you're describing is a simulation of the hypergeometric test, so if you want an exact solution you could use the function `fora` from …
Comment: How to remove duplicate reads after ONT basecalling from fastq.gz files by Darrenjdd • 0
Perfect! Thank you!
Comment: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p by Daniel • 0
Hi, I am wondering if you ever got an answer for this question. Also, I am curious why it is true that "All the reads coming from one end…
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