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Forum: Help for coding: Trinity for differential gene expression studies
Gene
5 minutes ago by rhossen • 0
0
votes
1
reply
27
views
Forum: Plots for DNA methylation data
plots DNA methylation
updated 1 hour ago by ★ 2.0k • written 2 hours ago by ▴ 10
0
votes
0
replies
38
views
Forum: Failed kmer content
content kmer illumina ngs
2 hours ago by Kasturi • 0
0
votes
0
replies
54
views
Forum: Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
annotation scRNA llm
5 hours ago by yxwucq • 0
4
votes
2
replies
267
views
Forum: Bioinformatics: Where do I start
Sequencing
updated 6 days ago by 43k • written 6 days ago by ▴ 10
7
votes
7
replies
999
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 7 days ago by ★ 2.5k • written 8 days ago by • 0
1
vote
2
replies
327
views
Forum: VCF bulk handling
bcftools SnpEff WGS VEP VCF
5 days ago by Javier • 0
16
votes
10
replies
1.0k
views
6 follow
Forum: F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 24 days ago by 5.3k • written 25 days ago by ★ 2.4k
1
vote
1
reply
211
views
Forum: Can I use this community for software development?
software-development
updated 28 days ago by 43k • written 29 days ago by • 0
5
votes
2
replies
373
views
Forum: Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 29 days ago by 54k • written 29 days ago by • 0
0
votes
0
replies
167
views
Forum: Field of Study in Computational Biology
Genomics Computational-Biology PhD
updated 5 weeks ago by 43k • written 5 weeks ago by • 0
1
vote
3
replies
468
views
Forum: Development plan for a bioinformatics database developer/coder
developer
5 weeks ago by pixie@bioinfo ★ 1.5k
7
votes
8
replies
652
views
Forum: Bioinformatics career transition
career forum
updated 5 weeks ago by ★ 16k • written 5 weeks ago by ▴ 20
4
votes
2
replies
467
views
Forum: Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein CAFA5
6 weeks ago by Anatoly A. ▴ 10
6
votes
6
replies
751
views
Forum: You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical thought-experiment
6 weeks ago by jared.andrews07 ★ 16k
0
votes
0
replies
158
views
Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 7 weeks ago by 43k • written 7 weeks ago by ★ 1.2k
0
votes
2
replies
358
views
Forum: What's the state of the art in bacterial whole genome alignment?
whole genome alignment mauve
7 weeks ago by Dave Carlson ★ 1.7k
31
votes
12
replies
926
views
7 follow
Forum: Nextflow and self-made pipelines opinion
nextflow pipeline data-analysis
7 weeks ago by karlaarz ▴ 90
5
votes
4
replies
536
views
Forum: Would reaching out to local labs and startups help with my career transition?
career volunteering
updated 8 weeks ago by 141k • written 8 weeks ago by ▴ 10
1
vote
2
replies
358
views
Forum: Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
Maternity Career-Gap career-reentry
updated 8 weeks ago by 81k • written 8 weeks ago by ▴ 20
8
votes
7
replies
771
views
6 follow
Forum: Tower Server configuration for NGS data analysis
NGS
updated 9 weeks ago by ▴ 120 • written 11 weeks ago by • 0
1
vote
0
replies
267
views
Forum: list of bioinformatics tools in cancer genomics
mutations CNA cancer genomics LOH
updated 9 weeks ago by 161k • written 9 weeks ago by ★ 1.4k
4
votes
2
replies
362
views
Forum: bulk seq vs. sc-seq
scATAC-seq ATAC-seq scRNAseq RNAseq
updated 10 weeks ago by ★ 5.8k • written 10 weeks ago by ▴ 10
8
votes
6
replies
2.8k
views
Forum: Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by 10k
0
votes
0
replies
193
views
Forum: tutorial for carrier screening analyses?
carrier-screening
updated 12 weeks ago by 43k • written 12 weeks ago by ▴ 20
2
votes
3
replies
423
views
Forum: My Project
Project CLI MD-Simulations Molecular-docking
12 weeks ago by Ajay A Shettigar • 0
17
votes
11
replies
972
views
Forum: How to overcome the imposter syndrome in bioinformatics?
advice
3 months ago by sil_bioinfo ▴ 40
10
votes
7
replies
2.2k
views
Forum: How to learn bioinformatics?
learning
updated 3 months ago by ★ 1.3k • written 23 months ago by ▴ 20
26
votes
27
replies
2.0k
views
10 follow
Forum: Determining computer time required
computer hpc time
updated 3 months ago by ★ 5.8k • written 3 months ago by ▴ 40
7
votes
6
replies
723
views
Forum: where to work as a bioinformatician (NGS/IA)
employment omics ia ngs
updated 3 months ago by 43k • written 3 months ago by ▴ 20
21
votes
12
replies
3.5k
views
Forum: How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta how-to documentation
3 months ago by Ram 43k
2
votes
1
reply
407
views
Forum: Cataloguing available spatial transcriptomics tools, then linking them together into a workflow?
cytassist transcriptomics nanostring xenium visium
3 months ago by LauferVA 4.2k
49
votes
20
replies
2.0k
views
10 follow
Forum: First experiences matter
first-time tolerance
updated 3 months ago by ★ 2.6k • written 3 months ago by ★ 27k
4
votes
3
replies
749
views
Forum: How to get started in bioinformatics
students
updated 3 months ago by 43k • written 3 months ago by ▴ 10
2
votes
2
replies
572
views
Forum: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat single-cell omics batch rnaseq
updated 3 months ago by 43k • written 3 months ago by ▴ 40
0
votes
2
replies
3.2k
views
Forum: I’m considering a career transition from software engineering to bioinformatics. Is it a good fit for me?
career
updated 3 months ago by 141k • written 3 months ago by ▴ 10
5
votes
3
replies
591
views
Forum: Binning the rare biosphere
metagenomics soil assembly techniques binning
updated 4 months ago by ★ 27k • written 4 months ago by ▴ 20
6
votes
2
replies
649
views
Forum: how to start Bioinformatics?
basics
updated 4 months ago by ★ 27k • written 4 months ago by • 0
19
votes
5
replies
1.1k
views
6 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics snps survey papers
4 months ago by Raony Guimarães ★ 1.4k
4
votes
6
replies
916
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 4 months ago by 43k • written 4 months ago by • 0
1
vote
1
reply
483
views
Forum: want to work in open source project/project in bioinformatics
project
updated 4 months ago by 43k • written 4 months ago by • 0
3
votes
5
replies
1000
views
Forum: Current Trends in Bioinformatics
structural-bioinformatics
updated 4 months ago by 43k • written 5 months ago by • 0
21
votes
11
replies
2.5k
views
6 follow
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
updated 5 months ago by 22k • written 13 months ago by ▴ 150
176
votes
46
replies
19k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
5 months ago by Istvan Albert 100k
3
votes
2
replies
616
views
Forum: RNA-Seq data analysis - question
Python RNA-Seq R
updated 5 months ago by ▴ 10 • written 5 months ago by ▴ 40
0
votes
0
replies
364
views
Forum: How to learn bioinformatics online?
self-education education learning
updated 5 months ago by 43k • written 5 months ago by • 0
6
votes
5
replies
2.3k
views
Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
5 months ago by tshtatland ▴ 190
7
votes
9
replies
1.4k
views
6 follow
Forum: Mentor for a beginner bioinformatics student
project mentor
5 months ago by UT_FAN ▴ 40
0
votes
0
replies
438
views
Forum: Steps after doublet detection in single cell data
scRNA doublet
6 months ago by ishwarvh • 0
0
votes
0
replies
348
views
Forum: Automated Checks And QA
retrospective
6 months ago by Sasha ▴ 840
1,000 results • Page 1 of 20
Recent Votes
Exciting 2024 Summer Internship Opportunity in Translational Genetics Arrowhead Pharmaceuticals!
Comment: Correlation for ATAC-Seq and Chip-Seq
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Comment: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
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Recent Replies
Answer: WGCNA preservation analysis by Michael 54k
This seems like a model case for why we need better sustainable bioinformatics data and services. I don't know the exact background behind …
Answer: some error in building kraken2 database by Art1ess • 0
this is names.dmp:![names.dmp][1] and nodes.dmp![nodes.dmp][2] [1]: /media/images/33cc9a8b-4818-48b4-913d-1c2b2185 [2]: /media/i…
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over by Pierre Lindenbaum 161k
see also : https://www.biostars.org/p/9537698/ ; https://www.biostars.org/p/9464312/ ; https://www.biostars.org/p/417123/
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over by Pierre Lindenbaum 161k
what's the gray section ? it's the read you want ? do you only want the reads that end at the splice event (single point location) ?
Comment: interpretartion of a vcf file by Pierre Lindenbaum 161k
yes if there is more than one sample genotyped.
Comment: interpretartion of a vcf file by samuelkalandarov2002 ▴ 10
Is it typical to observe such a profile in the context of diploid organism ?
Answer: Plots for DNA methylation data by Basti ★ 2.0k
Yes you can use ggplot2 to create your own plots from a table of results from a differential methylation analysis. You just need to adapt a…
Comment: Heatmap and rna-seq by Basti ★ 2.0k
This forum is not dedicated to this type of request, there are many online tutorials for creating heatmaps accessible with simple internet …
Answer: python file for coding potential calculator by atharvakarkare14 ▴ 10
Download the CPC2 tool supported by python 3 from here [https://github.com/gao-lab/CPC2_standalone/releases/tag/v1.0.1][1]. Then follow …
Comment: Redirection of Duplicate PMIDs by LauferVA 4.2k
let me know the scope and scale of the request (e.g. I need to do this for every record in Pubmed) and can help
Comment: Redirection of Duplicate PMIDs by LauferVA 4.2k
how is this query itself originating?
Comment: Redirection of Duplicate PMIDs by dominickd • 0
I was able to come up with a workaround using the requests library: import requests pmid = 30134295 url = 'https://pubmed.ncbi…
Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks? by HyperEvo • 0
Thanks for you answer! Actually I have already filtered my peak according to blacklist by bedtools. You mean it's meaningless to compare on…
Answer: Redirection of Duplicate PMIDs by GenoMax 141k
More than likely not since the database query seems to work for the redirected PMID but not the original. $ esearch -db pubmed -query …
Comment: DYH17 Structure Prediction by anasjamshed ▴ 120
Blast showed PDB: 8J07_n9(human) as best template with 62.99%. I also used swissmodel to model the protein and it showed: https://swissmod…
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