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1,000 results • Page
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Sort: Rank
Rank
Views
Votes
Replies
10
votes
8
replies
461
views
7 follow
Forum:
Any tips in landing a bioinformatic job?
Spain
R
1 day ago by
Jorge
▴ 30
100
votes
36
replies
27k
views
33 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 9 days ago by
Simon
▴ 30 • written 9.4 years ago by
14134125465346445
★ 3.6k
4
votes
2
replies
181
views
Forum:
advice on course selection for a bioinformatics career.
career
updated 10 days ago by
Istvan Albert
97k • written 10 days ago by
Aaron
• 0
0
votes
1
reply
170
views
Forum:
Graduate in molecular biology and genetics
biology
genetics
Molecular
updated 22 days ago by
GenoMax
127k • written 22 days ago by
zamzammahmud20
• 0
3
votes
1
reply
202
views
Forum:
Open problems in genomics 2023
genomics
pangenomics
updated 22 days ago by
GenoMax
127k • written 22 days ago by
colindaven
4.6k
5
votes
3
replies
346
views
Forum:
Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 24 days ago by
Joe
20k • written 24 days ago by
Cornelius
▴ 60
18
votes
10
replies
779
views
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
25 days ago by
bompipi95
▴ 120
1
vote
0
replies
135
views
Forum:
Penetrance versus heritability
penetrance
heritability
25 days ago by
tacrolimus
▴ 110
10
votes
15
replies
850
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
ucsc-genome-browser
4 weeks ago by
Maximilian Haeussler
★ 1.5k
8
votes
4
replies
382
views
Forum:
Implementing FAIR data principles to a bioinformatics lab
data
updated 5 weeks ago by
Jeremy Leipzig
21k • written 5 weeks ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
166
views
Forum:
NGSrich - hg38
Coverage
NGSrich
5 weeks ago by
RK
• 0
5
votes
5
replies
520
views
Forum:
Bioinformatics - how to start?
molecular-biology
updated 6 weeks ago by
Mensur Dlakic
★ 23k • written 6 weeks ago by
Abigail
• 0
8
votes
8
replies
1.1k
views
7 follow
Forum:
A Computer Scientist who wants to start Bioinformatics
computer-science
books
resources
ngs
updated 8 weeks ago by
omaridris5315
▴ 10 • written 3 months ago by
bjorn
• 0
7
votes
3
replies
562
views
Forum:
Find a research paper for reproducing the results
research
paper
updated 11 weeks ago by
GenoMax
127k • written 11 weeks ago by
grant.hovhannisyan
★ 2.5k
0
votes
1
reply
340
views
Forum:
Gene ontology vs Gene set enrichment
set
enrichment
GSEA
ontology
Gene
analysis
gene
updated 3 months ago by
dare_devil
★ 1.7k • written 3 months ago by
Emmykyz
• 0
6
votes
12
replies
860
views
Forum:
How to decide when to have local hardware vs cloud computing?
hardware
computational-resources
cloud
3 months ago by
Lluís R.
★ 1.2k
15
votes
10
replies
1.6k
views
6 follow
Forum:
BioStars and ChatGPT
ChatGPT
Meta
GPT
updated 3 months ago by
LChart
2.2k • written 3 months ago by
Jack Tierney
▴ 320
18
votes
10
replies
1.1k
views
7 follow
Forum:
Add artificial intelligence training related disclaimers to your profile
licensing
AI
updated 3 months ago by
Michael D
52k • written 3 months ago by
Istvan Albert
97k
0
votes
2
replies
2.7k
views
Forum:
Discussion question: Cutoff for SNP phylogeny
Phylogenetics
SNP
4 months ago by
SushiRoll
▴ 100
7
votes
2
replies
379
views
Forum:
Improvement of Wikipedia articles with bioinformatic subjects
Wikipedia
Bioinformatics
9 weeks ago by
Matthias Zepper
3.4k
5
votes
4
replies
544
views
Forum:
Best BAM viewer in 2022
bam
sam
tool-recommendation
4 months ago by
Cornelius
▴ 60
1.2k
votes
205
replies
48k
views
107 follow
Forum:
What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 10 weeks ago by
jena
▴ 250 • written 12.0 years ago by
Jeremy Leipzig
21k
8
votes
4
replies
544
views
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
4 months ago by
dlaehnemann
▴ 10
10
votes
13
replies
1.4k
views
8 follow
Forum:
Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice
industry
phd
updated 4 months ago by
iraun
5.9k • written 4 months ago by
buhbs
▴ 10
0
votes
2
replies
539
views
Forum:
Best Phd Programs in Usa ( Computational Biology)
computational-biology
drug-design
updated 3 months ago by
Ram
38k • written 6 months ago by
AleLs
• 0
4
votes
5
replies
598
views
6 follow
Forum:
Which Bioinformatics Master's degree is better?
bioifnormatics
masters
updated 5 months ago by
M.O.L.S
▴ 100 • written 5 months ago by
stelakarayani7
• 0
1
vote
1
reply
441
views
Forum:
Package is not available (for R version XXX)? Manually download and install R packages
installation
package
R
updated 12 weeks ago by
colindaven
4.6k • written 5 months ago by
JC
▴ 30
3
votes
6
replies
557
views
Forum:
How to become a moderator and other ways of contributing to Biostars
biostars
5 months ago by
iraun
5.9k
2
votes
3
replies
462
views
Forum:
Experiences with different cloud computing resources / providers
cloud
pipeline
rna-seq
alignment
updated 6 months ago by
Jeremy Leipzig
21k • written 6 months ago by
mjd79
▴ 10
19
votes
13
replies
1.3k
views
8 follow
Forum:
Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 6 months ago by
Rob
5.9k • written 6 months ago by
tsomakiank
▴ 40
8
votes
13
replies
1.4k
views
8 follow
Forum:
Commercial software for genomics / NGS / bioinformatics
NGS
software
genomics
updated 6 months ago by
artem barski
• 0 • written 6 months ago by
liorglic
★ 1.2k
4
votes
4
replies
794
views
Forum:
Bioinformatics analogies
Bioinformatics
updated 6 months ago by
Istvan Albert
97k • written 7 months ago by
melissachua90
▴ 40
2
votes
4
replies
673
views
Forum:
Is low N in-vivo research a blind spot for RNA-seq?
statistics
metascience
power
sample-size
updated 4 days ago by
Ram
38k • written 7 months ago by
telroyjatter
▴ 210
2
votes
4
replies
496
views
Forum:
strand specific data
strand
DNA
RNA
specific
coding
7 months ago by
upasana
• 0
3
votes
0
replies
370
views
Forum:
Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology
RTK
IC50
TKI
database
7 months ago by
Vincent Laufer
★ 2.6k
7
votes
14
replies
1.5k
views
7 follow
Forum:
Why isn't GWAS used in oncology?
gwas
association
oncology
studies
somatic
cancer
updated 7 months ago by
LChart
2.2k • written 7 months ago by
Kermit
▴ 80
4
votes
4
replies
906
views
Forum:
Cloud Computing Services available?
resources
Cloud-Computing
updated 3 months ago by
Ram
38k • written 9 months ago by
carlopecoraro2
★ 2.3k
2
votes
7
replies
815
views
Forum:
Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R
plot
rna-seq
count
updated 8 months ago by
Ram
38k • written 8 months ago by
ali
▴ 20
6
votes
3
replies
922
views
Forum:
Best formats for storing large amounts of data for random access
file-formats
databases
updated 8 months ago by
Matthias Zepper
3.4k • written 8 months ago by
i.sudbery
16k
0
votes
1
reply
339
views
Forum:
Add an intercept column to a bed file
plink
intercept
bed
updated 8 months ago by
ATpoint
71k • written 8 months ago by
kai.yang2
• 0
4
votes
2
replies
1.5k
views
Forum:
Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology
teaching
updated 3 months ago by
Ram
38k • written 8 months ago by
Vincent Laufer
★ 2.6k
0
votes
0
replies
361
views
Forum:
Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq
normalization
RPGC
Spikein
Normalization
8 months ago by
goddy93
• 0
3
votes
1
reply
400
views
Forum:
Would an automated NGS analytics platform help research?
ngs
data-analysis
updated 8 months ago by
Ram
38k • written 8 months ago by
Mandar Sahasrabuddhe
• 0
5
votes
2
replies
631
views
Forum:
Skills for industry career in bioinformatics
industry
updated 8 months ago by
rpolicastro
11k • written 8 months ago by
m.engalla
▴ 10
9
votes
6
replies
762
views
Forum:
Programming languages in industry
programming
language
updated 8 months ago by
Medhat
9.5k • written 8 months ago by
m.monikus
▴ 30
2
votes
6
replies
753
views
Forum:
Getting the best of RNA-Seq
RNA-Seq
isoform
gene
expression
9 months ago by
Antonio R. Franco
★ 5.1k
1
vote
0
replies
365
views
Forum:
Not all Over Representation Analyses are the same!
clusterProfiler
Analysis
fisher
hypergeometric
ORA
Pathway
9 months ago by
Francesco
▴ 20
3
votes
2
replies
530
views
Forum:
From protein-protein interaction networks to..
limitations
tools
knowledge
computational
workflow
9 months ago by
BioInfoBeginner
▴ 50
0
votes
0
replies
414
views
Forum:
Best practices for merging vcfs with different positions + different samples?
vcf
bcftools
genotypes
updated 3 months ago by
Ram
38k • written 9 months ago by
pabe
▴ 30
24
votes
6
replies
4.2k
views
6 follow
Forum:
Awk in Bioinformatics
perl
awk
shell
updated 4 months ago by
Ram
38k • written 4.6 years ago by
Shicheng Guo
★ 9.3k
1,000 results • Page
1 of 20
Recent Votes
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
SSPACE for scaffolding
Answer: Snakemake workflow for trimmomatic
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
A: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p
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Recent Replies
Comment: TCGA-BRCA tissue and RNAseq problem
by
pinheirofabiano
▴ 10
Go to https://portal.gdc.cancer.gov > Exploration > select TCGA and the cancer type you want > select case ID to download the files and hav…
Answer: Snakemake workflow for trimmomatic
by
antoine.fauchois92
• 0
Thank you very much for your reply ! It's working now !
Comment: Dependent p values
by
Eliza
▴ 20
@lchart I'm sorry for asking another of questions but I'm new to this field , can you please explain a little more how to use SKAT , saige…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
dare_devil
★ 1.7k
similar question [here][1], [here][2] and [here][3] [1]: https://support.bioconductor.org/p/54838/ [2]: https://support.bioconductor.…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
dare_devil
★ 1.7k
@genomax I have used the same platform file only. If you look at probe id and their corresponding `Gene Symbol` or `ENTREZ_GENE_ID` you can…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
GenoMax
127k
Where are you seeing this? [Platform file for this array][1] on GEO has these names uniquely assigned. [1]: https://www.ncbi.nlm.nih.go…
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL
by
rpolicastro
11k
`Org.Mm.eg.db` is the mouse organism database, but your ENSEMBL IDs are for human genes. Mouse ensembl ids start with `ENSMUSG`. You proba…
Comment: Snakemake doesn't recognize output files even though they are created
by
DdogBoss
• 0
Yes, it completed the dry run. What other information do you need?
Comment: LDSC correlation calculate confidence intervals
by
YL
▴ 10
Based on my personal thought, I think the se from LDSC output probably needs to be transferred using Delta method based on Fisher transform…
Comment: LDSC correlation calculate confidence intervals
by
YL
▴ 10
Hi, Are you able to find an answer for this? I have the exact question! YL
Answer: Gene duplicate
by
ATpoint
71k
Use use ensembID_geneName as gene identifier to avoid that. These duplicate names exist as genes so removing them is somewhat not really da…
Comment: Gene duplicate
by
Ram
38k
> some Ensembl IDs that are the same Please show us some examples.
Comment: R package for functional enrichment and depletion analysis
by
rpolicastro
11k
What you're describing is a simulation of the hypergeometric test, so if you want an exact solution you could use the function `fora` from …
Comment: How to remove duplicate reads after ONT basecalling from fastq.gz files
by
Darrenjdd
• 0
Perfect! Thank you!
Comment: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p
by
Daniel
• 0
Hi, I am wondering if you ever got an answer for this question. Also, I am curious why it is true that "All the reads coming from one end…
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