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1.2k
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206
replies
55k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 6 months ago by ★ 1.3k • written 12.7 years ago by 22k
61
votes
70
replies
13k
views
21 follow
Forum: Biostar 2.0 released
meta biostars
updated 9 months ago by 41k • written 9.6 years ago by 99k
279
votes
69
replies
19k
views
23 follow
Forum: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
subjective
updated 9 months ago by 41k • written 12.3 years ago by ▴ 160
134
votes
65
replies
5.2k
views
11 follow
Forum: Bioinformatics vs. the Climate Crisis
RNA-Seq Climate
updated 6 months ago by 41k • written 4.0 years ago by ▴ 880
307
votes
65
replies
21k
views
48 follow
Forum: Your Favorite Bioinformatics Blogs (March 2010)
subjective
13.1 years ago by Giovanni M Dall'Olio 28k
286
votes
64
replies
19k
views
44 follow
Forum: Bioinformatics "Cheat Sheet"
cheat sheet
updated 14 months ago by 86k • written 12.7 years ago by 22k
144
votes
62
replies
11k
views
23 follow
Forum: Is The Biostar Fading? (Updated For 2014)
meta biostars
updated 9 months ago by 41k • written 12.8 years ago by ★ 2.9k
361
votes
58
replies
66k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
education books
updated 6 weeks ago by 41k • written 13.8 years ago by 99k
206
votes
58
replies
40k
views
31 follow
Forum: Will Python Take The Place Of R?
r statistics python biopython
updated 9 months ago by 41k • written 10.5 years ago by 9.7k
65
votes
57
replies
7.3k
views
12 follow
Forum: Bioinformatics Mobile App
android genome iphone mutations
updated 22 months ago by 41k • written 9.1 years ago by ▴ 20
145
votes
56
replies
8.3k
views
17 follow
Forum: Suggesting The Removal Of Post Closing
biostars
updated 9 months ago by 41k • written 10.7 years ago by 99k
290
votes
55
replies
15k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 10 months ago by 41k • written 10.6 years ago by 10k
113
votes
53
replies
6.3k
views
16 follow
Forum: Middle author, but not first author projects. How would you approach this?
authorship career-development
updated 6 months ago by 41k • written 4.7 years ago by ▴ 170
93
votes
50
replies
15k
views
17 follow
Forum: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
personal-genomics 23andMe
updated 9 months ago by 41k • written 10.0 years ago by 99k
68
votes
48
replies
8.0k
views
16 follow
Forum: Stranger Things: unexpected limitations of popular tools
samtools hisat2
updated 6 months ago by 41k • written 6.4 years ago by 99k
262
votes
48
replies
22k
views
37 follow
Forum: Bioinformatics courses, workshops or training
Workshop Training Courses
updated 9 months ago by ★ 1.0k • written 8.6 years ago by ★ 4.2k
175
votes
46
replies
18k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
14 days ago by Istvan Albert 99k
125
votes
46
replies
47k
views
21 follow
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
visualization ChIP-Seq homer ngsplot deeptools
updated 8 months ago by 41k • written 7.7 years ago by ★ 3.2k
105
votes
46
replies
12k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 9 months ago by 41k • written 10.3 years ago by ★ 1.1k
130
votes
44
replies
31k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 8 months ago by 41k • written 7.2 years ago by ★ 1.0k
57
votes
43
replies
15k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 8 months ago by 41k • written 4.9 years ago by 10k
138
votes
42
replies
21k
views
22 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
meta
updated 8 months ago by 3.8k • written 10.5 years ago by ★ 1.6k
57
votes
42
replies
6.0k
views
12 follow
Forum: Why is academic software hard to install?
software-installation
updated 22 months ago by 41k • written 9.1 years ago by 33k
31
votes
41
replies
2.3k
views
12 follow
Forum: Question regarding journal publications
publications journals
updated 5 months ago by 41k • written 3.8 years ago by ▴ 40
98
votes
41
replies
5.4k
views
17 follow
Forum: I am really pissed off by the bioinformatics software world. Do/can we have a better solution?
software-error next-gen-sequencing
updated 8 months ago by 41k • written 7.3 years ago by ▴ 510
203
votes
41
replies
24k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics cram gatk galaxy
updated 9 months ago by 41k • written 9.1 years ago by ★ 5.2k
67
votes
40
replies
9.0k
views
12 follow
Forum: I want to re-open the old debate: python or perl ?
perl python
updated 21 months ago by 41k • written 9.0 years ago by ★ 2.9k
69
votes
39
replies
4.1k
views
14 follow
Forum: Preparation for Bioinformatics.SE closing
meta biostars
updated 6 months ago by 41k • written 6.5 years ago by 13k
25
votes
39
replies
5.3k
views
8 follow
Forum: Bioinformatics Study Group
study-group
updated 9 months ago by 41k • written 10.4 years ago by ▴ 440
36
votes
39
replies
3.5k
views
11 follow
Forum: Survey/Vote: If you could double the speed of any three commandline tools, which three would they be?
blast RNA-Seq alignment next-gen-sequencing
updated 6 months ago by 41k • written 6.1 years ago by ▴ 130
151
votes
39
replies
24k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics
updated 9 months ago by 41k • written 10.9 years ago by 3.0k
129
votes
38
replies
7.2k
views
21 follow
Forum: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
bioinformatics
updated 6 months ago by 41k • written 4.7 years ago by 99k
48
votes
38
replies
16k
views
8 follow
Forum: Eukaryotic Genome Annotation in 2016
software genome annotation
updated 8 months ago by 41k • written 7.7 years ago by 11k
100
votes
38
replies
29k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 11 days ago by 22k • written 10.1 years ago by ★ 3.6k
47
votes
37
replies
8.2k
views
12 follow
Forum: The Organisation Of Really Contrived Acronyms (Orca)
acronyms
updated 9 months ago by 41k • written 10.3 years ago by 2.3k
43
votes
37
replies
2.2k
views
7 follow
Forum: Checking the quality and reliability in bioinformatics
reproducibility
updated 6 months ago by 41k • written 6.2 years ago by ★ 4.2k
251
votes
36
replies
32k
views
27 follow
Forum: How Do You Manage Your Files & Directories For Your Projects ?
project-management file-management
updated 8 months ago by 41k • written 13.6 years ago by 158k
84
votes
36
replies
18k
views
13 follow
Forum: Benchmark - Comparison of Different NGS Mappers
mRNA-Seq benchmark NGS-mapper
updated 20 months ago by 41k • written 8.9 years ago by 10k
49
votes
36
replies
8.2k
views
11 follow
Forum: New features and bug fixes for Biostar to work on during Google Summer of Code
meta biostars gsoc
updated 9 months ago by 41k • written 9.6 years ago by ▴ 110
244
votes
36
replies
8.9k
views
32 follow
Forum: Good Habit for Bioinformatics Analyst or Scientist
Analyst Scientist
updated 8 months ago by 41k • written 7.6 years ago by ★ 9.3k
116
votes
35
replies
7.8k
views
18 follow
Forum: Is Biostar Killing The Bioinformatics Core?
core biostars
updated 9 months ago by 41k • written 10.7 years ago by 22k
79
votes
35
replies
8.9k
views
17 follow
Forum: Do bioinformaticians often break molecular biologists' hearts by being the first author?
authorship career
updated 6 months ago by • 0 • written 8.0 years ago by ▴ 650
121
votes
35
replies
41k
views
20 follow
Forum: Snakemake vs. Nextflow: strengths and weaknesses
snakemake nextflow
updated 6 months ago by 41k • written 6.5 years ago by ▴ 810
45
votes
35
replies
5.5k
views
12 follow
Forum: looking for a bioinformatics project to do during military rotation
military
updated 17 months ago by 41k • written 6.3 years ago by ▴ 60
54
votes
34
replies
4.5k
views
13 follow
Forum: Should We Release Database Dumps Of All Questions On Biostar?
meta biostars
updated 9 months ago by 41k • written 13.0 years ago by 99k
36
votes
34
replies
2.5k
views
9 follow
Forum: New to bioinformatics.....
gene
updated 6 months ago by 41k • written 5.7 years ago by • 0
31
votes
34
replies
6.8k
views
11 follow
Forum: pros- and cons- : programming skills vs. GUI
programming lecture
updated 8 months ago by 41k • written 8.0 years ago by ★ 4.7k
80
votes
34
replies
4.7k
views
11 follow
Forum: Authorship issues- how to resolve?
authorship
updated 11 months ago by 41k • written 8.5 years ago by ▴ 520
27
votes
33
replies
3.4k
views
7 follow
Forum: Biostars question catagories
statistics biostars meta
updated 7 months ago by 41k • written 7.1 years ago by 13k
120
votes
33
replies
38k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 6 months ago by ★ 2.4k • written 10.3 years ago by 11k
1,000 results • Page 1 of 20
Recent Votes
Comment: Bioinformatics: what do you think of it in the next 20 years?
Comment: KEGG DATABASE
Answer: From TPM to raw counts
Answer: GENE ONTOLOGY FOR TOMATO-ITAG4.1 OR 4
Answer: From TPM to raw counts
Comment: From TPM to raw counts
NOEL: An extremely fast Non-Overlapping Exon Length calculator written in Rust
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Recent Awards • All
Popular Question to bioinfo355 • 0
Popular Question to Pierre Lindenbaum 158k
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Recent Replies
Answer: Understanding gene level copy number data from TCGAbiolinks by bioinfo355 • 0
Were you able to get answer for your questions?
Answer: Error in blast+ by Mensur Dlakic ★ 25k
Joys of doing Bioinformatics on Windows, and consequently dealing with spaces in file and directory names. I suggest you move your datab…
Comment: Which language use as a beginner in Bioinformatics and Computational genomics by Mensur Dlakic ★ 25k
I assume here you mean the usefulness for common tasks such as file manipulation and pipeline creations. How would one do sequence assembly…
Answer: Which language use as a beginner in Bioinformatics and Computational genomics by Mensur Dlakic ★ 25k
There is no single language that is best suited for all areas of Bioinformatics. If one's main interest is RNA-seq, R will probably be more…
Comment: Which language use as a beginner in Bioinformatics and Computational genomics by Brian Bushnell 19k
It depends on specifically what you will be doing. But IMO the order of importance is Bash > Python > R.
Comment: Bam files generated with STAR cause a segmentation fault core dump error when us by bkffadia • 0
![Galaxy Command Line][1] [1]: /media/images/8c45586a-e3e3-46dd-b06b-a9788a6e
Comment: RNA seq by Istvan Albert 99k
there is no need to "average" anything, the point of replicates and RNA-Seq in general, is to measure the same thing several times and use …
Answer: Which language use as a beginner in Bioinformatics and Computational genomics by Istvan Albert 99k
I would say every scientist needs to know R - so if you don't know R it would serve you well to learn it. In my opinion Python is not we…
Answer: using RMA normalized microarray in Limma by ATpoint 78k
Arrays do not have counts. RMA-proceased data are fine. See limma user guide.
Comment: RNA seq by ATpoint 78k
What is the question? I assume you googled 'differential RNA-seq' and tried the obvious tools such as DESeq2 and limma?
Answer: Can't install hisat2 with miniconda by Istvan Albert 99k
You have installed the wrong version of conda. Even on M1 (arm64 CPU) you need to be using the Intel-based (x64 CPU) conda installer. So …
Comment: Bioinformatics: what do you think of it in the next 20 years? by Istvan Albert 99k
Famous poet once said: "We are what we were - and we will become what we are." The previous generation sets the stage for the next.
Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo by CTLong ▴ 20
After reads are mapped to the genome, there are algorithms that quantify the number of mapped reads onto a genomic locus. Some of these alg…
Comment: Bioinformatics: what do you think of it in the next 20 years? by GenoMax 136k
> what do you think of it in the next 20 years? It will be what people like you make of it (assuming you are just starting out and that is…
Comment: Fastest way to convert BED to GTF/GFF with gene_ids? by cmdcolin ★ 3.4k
thanks for making these great tools
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