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1,000 results • Page
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Votes
Replies
3
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3
replies
202
views
Forum:
Ideal PC configurations and operating system for bioinformatics laboratory
PC
updated 1 day ago by
GenoMax
141k • written 1 day ago by
Estevão
• 0
0
votes
0
replies
155
views
Forum:
Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
annotation
scRNA
llm
2 days ago by
yxwucq
• 0
4
votes
2
replies
276
views
Forum:
Bioinformatics: Where do I start
Sequencing
updated 8 days ago by
Ram
43k • written 8 days ago by
Adi
▴ 10
7
votes
7
replies
1.1k
views
Forum:
Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career
advice
updated 9 days ago by
Dunois
★ 2.5k • written 10 days ago by
AdviceSeeker
• 0
1
vote
2
replies
332
views
Forum:
VCF bulk handling
bcftools
SnpEff
WGS
VEP
VCF
7 days ago by
Javier
• 0
16
votes
10
replies
1.0k
views
6 follow
Forum:
F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 26 days ago by
Madelaine Gogol
5.3k • written 27 days ago by
Ann
★ 2.4k
1
vote
1
reply
216
views
Forum:
Can I use this community for software development?
software-development
updated 4 weeks ago by
Ram
43k • written 4 weeks ago by
avpuzanov
• 0
5
votes
2
replies
382
views
Forum:
Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 4 weeks ago by
Michael
54k • written 4 weeks ago by
avpuzanov
• 0
0
votes
0
replies
169
views
Forum:
Field of Study in Computational Biology
Genomics
Computational-Biology
PhD
updated 5 weeks ago by
Ram
43k • written 5 weeks ago by
Mohammed
• 0
1
vote
3
replies
472
views
Forum:
Development plan for a bioinformatics database developer/coder
developer
5 weeks ago by
pixie@bioinfo
★ 1.5k
7
votes
8
replies
657
views
Forum:
Bioinformatics career transition
career
forum
updated 5 weeks ago by
jared.andrews07
★ 16k • written 5 weeks ago by
jevill17
▴ 20
4
votes
2
replies
472
views
Forum:
Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein
CAFA5
6 weeks ago by
Anatoly A.
▴ 10
6
votes
6
replies
754
views
Forum:
You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical
thought-experiment
7 weeks ago by
jared.andrews07
★ 16k
0
votes
0
replies
160
views
Forum:
What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc
tcga
genomics-data-commons
updated 7 weeks ago by
Ram
43k • written 7 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
365
views
Forum:
What's the state of the art in bacterial whole genome alignment?
whole
genome
alignment
mauve
7 weeks ago by
Dave Carlson
★ 1.7k
31
votes
12
replies
939
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
7 weeks ago by
karlaarz
▴ 90
5
votes
4
replies
546
views
Forum:
Would reaching out to local labs and startups help with my career transition?
career
volunteering
updated 8 weeks ago by
GenoMax
141k • written 8 weeks ago by
Mango
▴ 10
1
vote
2
replies
361
views
Forum:
Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
Maternity
Career-Gap
career-reentry
updated 9 weeks ago by
ATpoint
82k • written 9 weeks ago by
ashaneev07
▴ 20
8
votes
7
replies
784
views
6 follow
Forum:
Tower Server configuration for NGS data analysis
NGS
updated 9 weeks ago by
emmanouil.a
▴ 120 • written 12 weeks ago by
harasharan
• 0
1
vote
0
replies
273
views
Forum:
list of bioinformatics tools in cancer genomics
mutations
CNA
cancer
genomics
LOH
updated 9 weeks ago by
Pierre Lindenbaum
161k • written 9 weeks ago by
Bogdan
★ 1.4k
4
votes
2
replies
368
views
Forum:
bulk seq vs. sc-seq
scATAC-seq
ATAC-seq
scRNAseq
RNAseq
updated 11 weeks ago by
dsull
★ 5.8k • written 11 weeks ago by
SebKittelmann
▴ 10
8
votes
6
replies
2.8k
views
Forum:
Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by
Asaf
10k
0
votes
0
replies
198
views
Forum:
tutorial for carrier screening analyses?
carrier-screening
updated 12 weeks ago by
Ram
43k • written 12 weeks ago by
Akos
▴ 20
2
votes
3
replies
427
views
Forum:
My Project
Project
CLI
MD-Simulations
Molecular-docking
12 weeks ago by
Ajay A Shettigar
• 0
17
votes
11
replies
977
views
Forum:
How to overcome the imposter syndrome in bioinformatics?
advice
3 months ago by
sil_bioinfo
▴ 40
10
votes
7
replies
2.2k
views
Forum:
How to learn bioinformatics?
learning
updated 3 months ago by
Samuel Lampa
★ 1.3k • written 23 months ago by
sakichwan
▴ 20
26
votes
27
replies
2.0k
views
10 follow
Forum:
Determining computer time required
computer
hpc
time
updated 3 months ago by
dsull
★ 5.8k • written 3 months ago by
Rozita
▴ 40
7
votes
6
replies
728
views
Forum:
where to work as a bioinformatician (NGS/IA)
employment
omics
ia
ngs
updated 3 months ago by
Ram
43k • written 3 months ago by
Petur
▴ 20
21
votes
12
replies
3.5k
views
Forum:
How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta
how-to
documentation
3 months ago by
Ram
43k
2
votes
1
reply
411
views
Forum:
Cataloguing available spatial transcriptomics tools, then linking them together into a workflow?
cytassist
transcriptomics
nanostring
xenium
visium
3 months ago by
LauferVA
4.2k
49
votes
20
replies
2.0k
views
10 follow
Forum:
First experiences matter
first-time
tolerance
updated 3 months ago by
Michael Love
★ 2.6k • written 3 months ago by
Mensur Dlakic
★ 27k
4
votes
3
replies
754
views
Forum:
How to get started in bioinformatics
students
updated 3 months ago by
Ram
43k • written 3 months ago by
Soidihane
▴ 10
2
votes
2
replies
576
views
Forum:
Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat
single-cell
omics
batch
rnaseq
updated 3 months ago by
Ram
43k • written 3 months ago by
cwwong13
▴ 40
0
votes
2
replies
3.2k
views
Forum:
I’m considering a career transition from software engineering to bioinformatics. Is it a good fit for me?
career
updated 3 months ago by
GenoMax
141k • written 3 months ago by
Mango
▴ 10
5
votes
3
replies
597
views
Forum:
Binning the rare biosphere
metagenomics
soil
assembly
techniques
binning
updated 4 months ago by
Mensur Dlakic
★ 27k • written 4 months ago by
Konstantin
▴ 20
6
votes
2
replies
656
views
Forum:
how to start Bioinformatics?
basics
updated 4 months ago by
Mensur Dlakic
★ 27k • written 4 months ago by
sajibsuvo70
• 0
19
votes
5
replies
1.1k
views
6 follow
Forum:
What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics
snps
survey
papers
4 months ago by
Raony Guimarães
★ 1.4k
4
votes
6
replies
918
views
6 follow
Forum:
Bioinformatics: what do you think of it in the next 20 years?
future
updated 4 months ago by
Ram
43k • written 4 months ago by
Daniel
• 0
1
vote
1
reply
486
views
Forum:
want to work in open source project/project in bioinformatics
project
updated 4 months ago by
Ram
43k • written 5 months ago by
Afeef
• 0
3
votes
5
replies
1.0k
views
Forum:
Current Trends in Bioinformatics
structural-bioinformatics
updated 4 months ago by
Ram
43k • written 5 months ago by
Paulo
• 0
21
votes
11
replies
2.5k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 5 months ago by
Jeremy Leipzig
22k • written 13 months ago by
bompipi95
▴ 150
176
votes
46
replies
19k
views
26 follow
Forum:
Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
5 months ago by
Istvan Albert
100k
3
votes
2
replies
619
views
Forum:
RNA-Seq data analysis - question
Python
RNA-Seq
R
updated 5 months ago by
fturner
▴ 10 • written 5 months ago by
sil_bioinfo
▴ 40
0
votes
0
replies
367
views
Forum:
How to learn bioinformatics online?
self-education
education
learning
updated 5 months ago by
Ram
43k • written 5 months ago by
Brian Rey | BioLearn
• 0
6
votes
5
replies
2.3k
views
Forum:
Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
6 months ago by
tshtatland
▴ 190
7
votes
9
replies
1.4k
views
6 follow
Forum:
Mentor for a beginner bioinformatics student
project
mentor
6 months ago by
UT_FAN
▴ 40
0
votes
0
replies
444
views
Forum:
Steps after doublet detection in single cell data
scRNA
doublet
6 months ago by
ishwarvh
• 0
0
votes
0
replies
351
views
Forum:
Automated Checks And QA
retrospective
6 months ago by
Sasha
▴ 840
7
votes
13
replies
1.4k
views
Forum:
How do you validate and verify your pipeline's software updates?
Validation
Verification
Quality-Assurance
updated 6 months ago by
Ram
43k • written 6 months ago by
kieran
▴ 10
21
votes
7
replies
11k
views
Forum:
Bioinformatics short paper journal resource [software/webapps/database]
journal
software
webapp
updated 6 months ago by
Gennady Khvorykh
▴ 100 • written 8.0 years ago by
Sukhi Singh
11k
1,000 results • Page
1 of 20
Recent Votes
Answer: Fetch table from clinvar database according to a list of rsid
Comment: Fetch table from clinvar database according to a list of rsid
Comment: Adding CB tag to bam file
Comment: alignment result
Comment: clustalo - align milions of short seq, memory issue
Answer: clustalo - align milions of short seq, memory issue
Comment: downloading genomes in fasta format from accession ids
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Comment: Fetch table from clinvar database according to a list of rsid
by
ashaneev07
▴ 20
so which one should i prefer? i don't need the entire results i need the condition-Germline table only. (for eg:-from, https://www.ncbi.nlm…
Comment: To get p-values for the TPM
by
dsull
★ 5.8k
OK, not sure why your intention is to use RSEM p-values for, but at least tell us the commands you ran then otherwise how are we supposed t…
Comment: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
▴ 10
Sure, I'll inquire about the version of Rsubread. I'll keep you posted if it works :) Thanks
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
▴ 10
Yeah, let me show you my featureCounts result, it looks like this. It's too low. [1]: /media/images/eb8293fe-e6ae-4b02-92e2-0ba2075b
Comment: Adding CB tag to bam file
by
Pierre Lindenbaum
161k
samtools addreplacerg is for read groups. This is not what OP asked.
Comment: Adding CB tag to bam file
by
Maria
• 0
When I try ``` samtools addreplacerg -r "@CB\tID:$cell" -o $cell.bam $LINE``` the CB tag gets add to the header, but the tag in every line …
Answer: Figures are disappeared from html report of SnpEff
by
Pierre Lindenbaum
161k
the remote website providing the javascript or/and the images is down or you're now behind a proxy. Check the firefox console: https://fire…
Comment: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
ah ! and your code doesn't work because clinvar ID is not a rs-ID.
Answer: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
$ cat input.rs rs11203366 rs11203367 rs874881 rs776453694 rs80324279 rs324420 rs112766203 wget -…
Comment: Highest variable features in single cell data
by
ATpoint
82k
> and these cells are not even in a single cluster. What does this mean? If you run clustering on all cells then every cell is assigned t…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
by
Bertalan_Takacs
▴ 90
Yes, I can tell that, but as far as I see it doesn't contain any other information about the genomes, such as if they were representative i…
Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
by
b.contreras.moreira
▴ 170
You can try <https://github.com/inab/trimal>
Comment: To get p-values for the TPM
by
VITALA
• 0
yes i want what rsem does and i did try with prior-enhanced option/pRSEM, but i think pRSEM is for chipseq data
Comment: alignment result
by
ahmad.sajad4541
• 0
Thank you so much. Should i proceed for annotation step?
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