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Forum: Retrieve SCCM data for client software distribution serviceNow
training servicenow online
17 months ago by hkrtrainings408 • 0
47
votes
24
replies
5.7k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 9 months ago by 40k • written 5.9 years ago by 53k
5
votes
8
replies
2.1k
views
Forum: SQL-why do we need it in Bioinformatics ?
SQL Programming
updated 9 months ago by 40k • written 17 months ago by ▴ 10
6
votes
7
replies
881
views
Forum: Generic avatars, not gravatars?
technical avatar
18 months ago by Michael 53k
4
votes
0
replies
2.3k
views
Forum: Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat scrnaseq
18 months ago by rohitsatyam102 ▴ 750
0
votes
0
replies
434
views
Forum: Phylogenomics in the presence of gene flow
hybridisation introgression gene-flow Phylogenomics
18 months ago by jeronimocid93 • 0
2
votes
2
replies
819
views
Forum: Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs bioinformatician
updated 15 months ago by 40k • written 18 months ago by ▴ 20
15
votes
11
replies
4.0k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 4 months ago by 40k • written 18 months ago by ★ 1.8k
0
votes
0
replies
379
views
Forum: CIRCexplorer2 - Getting Count Matrix
CIRCexplorer2 counts circRNA
18 months ago by akamonto • 0
2
votes
5
replies
772
views
Forum: 1000 genomes data?
DNA 1000genomes variation
updated 18 months ago by 40k • written 18 months ago by ▴ 520
0
votes
0
replies
417
views
Forum: What kind of analysis automation or pipeline is most needed in genomic data analysis right now?
dna genome analysis programming statistics
updated 18 months ago by 76k • written 18 months ago by • 0
29
votes
10
replies
5.8k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 6 months ago by 40k • written 5.5 years ago by 21k
3
votes
6
replies
1.9k
views
Forum: A Css For Small Screen Devices?
meta
updated 7 months ago by 40k • written 11.4 years ago by ★ 3.6k
12
votes
6
replies
1.7k
views
Forum: M.S. Bioinformatics and Computational Biology: Will I be able to find a job after graduation? I'm worried...
career Masters Graduation
updated 15 months ago by 40k • written 19 months ago by ▴ 20
0
votes
3
replies
763
views
Forum: Project Topics on bioinformatic
Data-analysis Coding Molecular-biology
updated 4 months ago by 40k • written 19 months ago by • 0
0
votes
4
replies
986
views
Forum: Declining multithreading Diamond performance on decent dual AMD Epyc 7643 server
diamond performance EPYC 7643 multithreading AMD poor
updated 19 months ago by 134k • written 19 months ago by ▴ 10
2
votes
0
replies
612
views
Forum: How to download multiple .gz files from Ensembl Protists database
wget protist ensembl
19 months ago by rohitsatyam102 ▴ 750
3
votes
4
replies
1.9k
views
Forum: Bioinformatics Research Topics/Areas that Everyone should take a look / Current Trends
research-area postgraduates
updated 7 months ago by 40k • written 19 months ago by ▴ 10
1
vote
0
replies
434
views
Forum: Continue exploring Bioinformatics and improving Bioinformatics Skills
postgraduate bioinformatics-skills
updated 7 months ago by 40k • written 19 months ago by ▴ 10
0
votes
1
reply
636
views
Forum: ensemble VEP server is down
VEP ensemble
updated 19 months ago by 76k • written 19 months ago by • 0
15
votes
10
replies
1.6k
views
7 follow
Forum: Tips and tricks to improve data visualization in bioinformatics
visualization ggplot2 plot
updated 19 months ago by ★ 24k • written 19 months ago by ★ 2.7k
3
votes
8
replies
1.2k
views
Forum: What are the pain points of using Genomics on the cloud today?
datasharing pipelines workspaces cloud genomics
updated 20 months ago by 21k • written 20 months ago by ▴ 520
0
votes
0
replies
436
views
Forum: UniProt survey about programmatic access
documentation api survey uniprot
updated 20 months ago by 157k • written 20 months ago by ★ 2.3k
4
votes
9
replies
2.3k
views
Forum: 100% variance explained on one PC in DESeq2 PCA?
RNA-Seq DESeq2
20 months ago by melatoninixo ▴ 10
17
votes
14
replies
2.7k
views
Forum: Asking for feedback on a Python library for computing alignments
alignment Python
updated 3 months ago by ▴ 200 • written 20 months ago by ▴ 60
0
votes
1
reply
506
views
Forum: Statistical methods Books Recommendation
Books Recommendation
updated 20 months ago by 76k • written 20 months ago by ▴ 110
0
votes
0
replies
354
views
Forum: Is there any limitation for number of samples in AUC analysis ?
curves ROC
20 months ago by sabaghianamir70 ▴ 70
6
votes
5
replies
3.8k
views
6 follow
Forum: How is the job outlook in 2020 ?
career outlook
updated 15 months ago by 40k • written 5.3 years ago by • 0
6
votes
5
replies
926
views
6 follow
Forum: Usability of depiction of individual reads in genome browser visualization
visualization browser genome
updated 20 months ago by 98k • written 20 months ago by ▴ 590
4
votes
7
replies
1.5k
views
Forum: Data Base management system for data lake: Cassandra vs MongoDB vs Apache HBase
HBase Cassandra MongoDB Data-Lake
updated 20 months ago by ★ 3.2k • written 20 months ago by ▴ 120
9
votes
8
replies
4.8k
views
9 follow
Forum: insert figure and code in the post of Biostars?
meta biostars
updated 6 months ago by 40k • written 8.3 years ago by ★ 2.2k
7
votes
2
replies
1.3k
views
Forum: What are the most influential Bioinformatics/Computational Biology papers/methods/discoveries of 2021?
snp papers survey
updated 7 months ago by 40k • written 21 months ago by ★ 1.2k
0
votes
1
reply
633
views
Forum: What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 3 months ago by 40k • written 21 months ago by ★ 2.3k
24
votes
11
replies
3.6k
views
7 follow
Forum: In 2022 is Perl and Ruby programming languages still useful for bioinformatics?
ruby perl
updated 21 months ago by 8.2k • written 21 months ago by • 0
0
votes
4
replies
681
views
Forum: Terms (like atlas, map, and archive) on database description
database
21 months ago by bioinformaticsBoy ▴ 10
2
votes
2
replies
630
views
Forum: How much are companies willing to pay for microbiome data?
NGS metagenomics microbiome
21 months ago by maa4618 • 0
19
votes
1
reply
4.0k
views
Forum: Best programming language for bioinformatics - R Language
programming R
updated 6 months ago by 76k • written 2.6 years ago by ▴ 350
6
votes
7
replies
1.1k
views
Forum: How to change my email address
meta biostars
updated 21 months ago by • 0 • written 2.6 years ago by ▴ 50
9
votes
11
replies
2.8k
views
6 follow
Forum: 2021: state and usage of compressed file standards better than BAM and FASTQ
bam compression fastq
updated 14 months ago by ▴ 100 • written 2.4 years ago by ★ 5.2k
7
votes
3
replies
3.4k
views
Forum: Trimming tools - your experience please?
trimming
updated 22 months ago by 17k • written 22 months ago by ▴ 20
8
votes
9
replies
1.5k
views
Forum: Most useful public genomic/genetic databases/tools/applications
public-data genomics Genetics open-access
updated 7 months ago by 40k • written 22 months ago by ▴ 520
74
votes
14
replies
29k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 15 months ago by 40k • written 13.3 years ago by 4.5k
6
votes
3
replies
959
views
Forum: Computational Biology Conference
biology computational science research conference
updated 22 months ago by 47k • written 22 months ago by ▴ 760
0
votes
1
reply
591
views
Forum: UK supercomputer Cambridge-1 vs SDSC vs TACC
SDSC TACC HPC Cambridge-1
updated 22 months ago by 134k • written 22 months ago by ★ 9.3k
0
votes
1
reply
576
views
Forum: Official/centralized/designated genetic/biological knowledge graph?
knowledge graph
updated 22 months ago by 8.4k • written 22 months ago by • 0
0
votes
0
replies
425
views
Forum: Targeted sequencing and phylogenetics
SC sequencing exome gene_panel
updated 7 months ago by 40k • written 22 months ago by • 0
2
votes
7
replies
2.8k
views
Forum: M1 Pro/Max and future
Max M1 M2 Pro Mac
updated 22 months ago by 134k • written 22 months ago by ▴ 20
21
votes
8
replies
5.6k
views
Forum: Is there ever a good reason to use a log transformation instead of Box-Cox?
data skew transformation power
updated 23 months ago by 98k • written 23 months ago by ★ 24k
6
votes
2
replies
655
views
Forum: Biology undergraduate looking for mentor
computational-biology Biology mentor Toronto
updated 23 months ago by 40k • written 23 months ago by • 0
1
vote
7
replies
1.2k
views
Forum: Does it matter where I get my PhD? I am currently a masters student.
advice PhD Masters
23 months ago by nickroseae ▴ 10
1,000 results • Page 3 of 20
Recent Votes
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti
Comment: Error in bowtie2
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
Comment: Using STAR aligner to build index of hg38
Answer: How to sort using samtools
The Biostar Handbook. A bioinformatics e-book for beginners.
The Biostar Handbook. A bioinformatics e-book for beginners.
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Recent Replies
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti by Y • 0
I tried the commands you recommended in the bash/command line. When I tried `find "${bam_directory}" -type f -name "*.bam" | xargs samtools…
Comment: Hugo_Symbol to Entrez ID by GenoMax 134k
Can you provide some examples of HUGO ID's you are unable to convert?
Comment: Using STAR aligner to build index of hg38 by GenoMax 134k
GTF file includes gene models/annotation information. You could also use a program like `salmon/kallisto` with just human transcriptome to…
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti by Pierre Lindenbaum 157k
then test each files. find "${bam_directory}" -type f -name "*.bam" | xargs samtools quickcheck file "${reference_gen…
Answer: Ties in reranked list by alserg ▴ 840
The problem here is not the ties, but that your gene IDs in the pathway list (ensemble human genes) does not match the names of the stats v…
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti by Y • 0
I did not use the space between the `-u` flag and the `-o` flag (the blank line) but I did do what you recommended: # Run CuffDiff wit…
Answer: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti by Pierre Lindenbaum 157k
how about simply trying: ``` cuffdiff -u "${annotation_gtf}" \ -o "${output_directory}" \ -b "${reference_genome}" \ -p "${num_th…
Comment: Using STAR aligner to build index of hg38 by Grace • 0
Yes, I know also need a GTF file. So the GTF file will include RNA information? Thanks for your answer!!
Comment: STAR Intron Motif Script Gives Segmentation fault Error by Y • 0
I will try and figure it out on my own given what you all have mentioned. Thank you for your time.
Comment: Using STAR aligner to build index of hg38 by Amitm ★ 2.2k
Have you gone through the manual [here][1]. In addition to the genome fasta file, you would also need a GTF file (of gene annotations) to b…
Comment: Highly inflated p-values in GWAS by regenie by 4galaxy77 2.8k
You still definitely need to include principle components as covariates, even if your data is from the same ethnicity. Not including those …
Answer: How to create structural variants ground truth for alignment of two long-read ge by Christophe • 0
Hi, D-genies is using minimap2 to align both genomes and minimap2 is chaining local alignments to produce a global one. If the SV are sm…
Comment: Ties in reranked list by Hamza • 0
In this case there are no results in my fgsea object unfortunately
Comment: Genes with promoter and enhancer regions as GTF by abis.1819104 • 0
how to generate promoters.bed and enhancer.bed files from gtf file
Comment: Deepvariant variant calling by singularity by jeffhsu3 • 0
I am having a similar issue was this ever resolved? Getting this error: I0922 22:22:08.794076 140356687390528 make_examples_core.py:257] O…
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