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284 results • Page 1 of 6
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3
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158
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Forum: Any tips in landing a bioinformatic job?
Spain R
updated 20 minutes ago by ★ 2.5k • written 10 hours ago by ▴ 10
100
votes
36
replies
27k
views
33 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 7 days ago by ▴ 30 • written 9.4 years ago by ★ 3.6k
4
votes
2
replies
173
views
Forum: advice on course selection for a bioinformatics career.
career
updated 8 days ago by 97k • written 8 days ago by • 0
0
votes
1
reply
167
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 20 days ago by 127k • written 20 days ago by • 0
3
votes
1
reply
197
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 20 days ago by 127k • written 20 days ago by 4.6k
5
votes
3
replies
339
views
Forum: Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 21 days ago by 20k • written 21 days ago by ▴ 60
18
votes
10
replies
767
views
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
22 days ago by bompipi95 ▴ 120
1
vote
0
replies
133
views
Forum: Penetrance versus heritability
penetrance heritability
23 days ago by tacrolimus ▴ 110
10
votes
15
replies
839
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta ucsc-genome-browser
28 days ago by Maximilian Haeussler ★ 1.5k
2
votes
4
replies
670
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 2 days ago by 38k • written 7 months ago by ▴ 210
29
votes
10
replies
5.1k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 20 days ago by 38k • written 5.0 years ago by 20k
9
votes
8
replies
4.6k
views
9 follow
Forum: insert figure and code in the post of Biostars?
meta biostars
updated 20 days ago by 38k • written 7.8 years ago by ★ 2.1k
19
votes
1
reply
3.5k
views
Forum: Best programming language for bioinformatics - R Language
programming R
updated 19 days ago by 70k • written 2.1 years ago by ▴ 240
1
vote
0
replies
549
views
Forum: Questions about going into Bioinformatics from an IT career
career
updated 20 days ago by 38k • written 17 months ago by ▴ 10
17
votes
8
replies
1.8k
views
7 follow
Forum: Where should a biologist start when learning computational biology & systems biology
data-science systems-biology computational-biology
updated 13 days ago by 38k • written 19 months ago by ▴ 50
8
votes
11
replies
1.2k
views
6 follow
Forum: Paper: Ten simple rules for biologists initiating a collaboration with computer scientists
article opinion
updated 20 days ago by 38k • written 2.4 years ago by 13k
6
votes
4
replies
775
views
Forum: What are the major advances in Bioinformatics since 2016
Bioinformatics
updated 13 days ago by 38k • written 20 months ago by ▴ 30
20
votes
12
replies
37k
views
7 follow
Forum: When To Use Sed Awk Over Perl Or Python
perl python awk
updated 28 days ago by 38k • written 9.3 years ago by 9.5k
6
votes
12
replies
12k
views
11 follow
Forum: Online/remote/distance learning/ - partime/fulltime - PhD, Bioinformatics in USA
PhD university
updated 20 days ago by 38k • written 6.5 years ago by ▴ 20
9
votes
5
replies
1.6k
views
Forum: Should I get my MS in Bioinformatics at UCSC or GA Tech
genome
updated 20 days ago by 38k • written 2.0 years ago by ▴ 10
50
votes
20
replies
4.9k
views
18 follow
Forum: Explain bioinformatics to a 10 year old
bioinformatics
updated 20 days ago by 38k • written 7.1 years ago by ★ 1.1k
3
votes
2
replies
1.1k
views
Forum: If I want to learn bioinformatics as a computer scientist, would it help to learn Data science and Machine Learning first?
computer-scientist machine-learning
updated 20 days ago by 38k • written 2.0 years ago by • 0
3
votes
5
replies
890
views
Forum: Hide Emails from Guests
meta biostars
updated 20 days ago by 38k • written 2.3 years ago by ▴ 750
0
votes
0
replies
481
views
Forum: Tools to check if the user defined pathway is enriched in the data
RNA-Seq sequencing R
updated 20 days ago by 38k • written 2.0 years ago by ▴ 50
28
votes
7
replies
1.5k
views
Forum: Do you have favorite icons for bioinformatics?
ubuntu
updated 20 days ago by 38k • written 2.1 years ago by ▴ 250
1
vote
0
replies
448
views
Forum: Determining Heteroplasmy per sample
heteroplasmy bcftools
updated 20 days ago by 38k • written 2.1 years ago by ▴ 10
4
votes
4
replies
626
views
Forum: Looking for a CS PhD Program + tips
PhD
updated 20 days ago by 38k • written 2.1 years ago by • 0
29
votes
4
replies
6.6k
views
Forum: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
software-error bowtie2 bioconda conda tbb
updated 20 days ago by 38k • written 2.1 years ago by ▴ 240
126
votes
44
replies
27k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 20 days ago by 38k • written 6.5 years ago by ▴ 970
2
votes
0
replies
544
views
Forum: Need recommendations on best certificates to take to boost bioinformatics career and income.
courses
updated 20 days ago by 38k • written 2.1 years ago by ▴ 20
1
vote
0
replies
569
views
Forum: Help EMBL-EBI maintain its services: articulating the value of open data
embl-ebi open-data
updated 20 days ago by 38k • written 2.1 years ago by 23k
0
votes
1
reply
552
views
Forum: What is the relationship between Medical Science & Computing (MSC) and NIH?
career
updated 20 days ago by 38k • written 2.1 years ago by ★ 1.1k
16
votes
11
replies
1.2k
views
10 follow
Forum: Suggest common programming tasks for biologists who are novice programmers
education
updated 20 days ago by 38k • written 2.1 years ago by ▴ 40
1
vote
4
replies
684
views
Forum: Very high ratio of cases to controls - how to increase statistical power?
gwas SNP
updated 20 days ago by 38k • written 2.1 years ago by ▴ 10
1
vote
4
replies
865
views
Forum: is valid to apply several cut offs thresholds to a data-matrix used to perform coexpression analysis until reach the desire result?
RNA-Seq matrix-filtering coexpression-analysis
updated 20 days ago by 38k • written 2.1 years ago by • 0
4
votes
6
replies
780
views
Forum: What are some areas of bioinformatics that are overdone?
bioinformatics
updated 20 days ago by 38k • written 2.1 years ago by 21k
2
votes
5
replies
596
views
Forum: Unit test / integration test packages for R for bioinformatic projects?
R
updated 20 days ago by 38k • written 2.1 years ago by ★ 3.3k
6
votes
5
replies
1.1k
views
Forum: Pacific Bio Long Reads vs Illumina Short Reads
next-gen RNA-Seq alignment
updated 20 days ago by 38k • written 2.1 years ago by ▴ 40
40
votes
24
replies
2.1k
views
13 follow
Forum: What programming language do you use the most in your work? Which one do you like the best?
Programming Python R Scripting
updated 20 days ago by 38k • written 2.1 years ago by ▴ 80
1
vote
3
replies
1.8k
views
Forum: MOOC for AI and Machine learning for Bioinformatics
ML AI
updated 20 days ago by 38k • written 2.6 years ago by ★ 1.5k
0
votes
0
replies
452
views
Forum: How to deal with contamination in bulkseq samples? Looking at correlated genes?
RNA-Seq
updated 20 days ago by 38k • written 2.1 years ago by • 0
57
votes
43
replies
14k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 20 days ago by 38k • written 4.2 years ago by 9.9k
23
votes
7
replies
1.2k
views
6 follow
Forum: Where to start? Newbie trying to enter the world of computational biology getting lost
cytoscape RNA-Seq R
updated 20 days ago by 38k • written 2.2 years ago by ▴ 60
7
votes
4
replies
690
views
Forum: Employer Insights for Bioinformatics Job Seekers
advice career
updated 20 days ago by 38k • written 2.2 years ago by ▴ 130
13
votes
7
replies
2.9k
views
9 follow
Forum: What are the 5 biggest challenges/ opportunities in Bioinformatics going into 2021?
research challenges
updated 16 days ago by 38k • written 2.2 years ago by ▴ 50
11
votes
11
replies
3.0k
views
8 follow
Forum: Best open source genome browser in 2020
genome-browser genomics
updated 8 days ago by 38k • written 2.4 years ago by ▴ 30
84
votes
22
replies
3.5k
views
12 follow
Forum: is fortran still used in bioinformatics?
FORTRAN R
updated 20 days ago by 38k • written 3.8 years ago by ▴ 180
0
votes
2
replies
1.6k
views
Forum: Invitation to submit book chapter (Bioinformatics and evolutionary biology) for spinger book (Only three chapters left)
Evolutionary-biology
updated 8 days ago by 38k • written 2.3 years ago by ▴ 30
8
votes
3
replies
1.7k
views
Forum: List of free, online training resources for researchers
ChIP-Seq online-course RNA-Seq genome
updated 16 days ago by 38k • written 3.0 years ago by ▴ 80
0
votes
1
reply
1.2k
views
Forum: MS Bioinformatics after MBBS
MBBS career Masters Pakistan
updated 8 days ago by 38k • written 3.0 years ago by • 0
284 results • Page 1 of 6
Recent Votes
Answer: Variant caller reports a homozygous variant genotype, but more reads are associa
Answer: How can I use bcftools mpileup or an alternative to find ALL variants without an
Answer: What is the NCBI's definition of an "atypical genome"?
Comment: GO enrichment analysis
Comment: GO enrichment analysis
Answer: What is the NCBI's definition of an "atypical genome"?
A: Why is RNA-Seq or cDNA used to detect gene fusions instead of gDNA?
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Popular Question to Bogdan ★ 1.3k
Popular Question to pavelasquezv ▴ 50
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Recent Replies
Answer: Any tips in landing a bioinformatic job? by Vincent Laufer ★ 2.5k
Do you have a public facing github page (or equivalent) that provides examples of bioinformatics workflows you've created? For myself, if …
Comment: Align miRNA library (small RNA-seq) without trimming by Paola ▴ 10
Hi Ming Untrimmed reads have 76bp in average.
Answer: Align miRNA library (small RNA-seq) without trimming by Ming Tommy Tang ★ 2.9k
bowtie 1 is good for short read < 50bp, how long is your read? bowtie2 is better for reads > 50 bp
Comment: Differences in RNAseq Variant Calling and Allele Specific Expression by afei • 0
Hi! I'm also confused by this. And the site (https://gatkforums.broadinstitute.org/gatk/categories/gatk-support-forum) is closed. Have you …
Comment: Variant caller reports a homozygous variant genotype, but more reads are associa by rebeliscu ▴ 50
Indeed, I thought the quality might be a factor. Still, given the information, it seems odd to me that that call was made. Thanks for you…
Answer: How can I use bcftools mpileup or an alternative to find ALL variants without an by cfos4698 ▴ 730
To generate a VCF file one would normally pipe the input of an `mpileup` command into an actual `call` command. For example: ``` bcftools …
Answer: PTM-aware protein folding / docking by Mensur Dlakic ★ 23k
Your assumption is correct - AlphaFold pTM has nothing to do with post-translational modifications. See [**here**][1]. Not to discourage…
Answer: Admixture cv error by Declan • 0
I had this issue today and was able to resolve it by changing the random seed Admixture uses by adding `-s time` (which sets the random see…
Answer: Total No of Genes of GENCODE Release 43 by ahmad • 0
The following is the correct code gtf_43<-rtracklayer::import('gencode.v43.primary_assembly.annotation.gtf') dtgtf_43<-data.frame(gtf_4…
Comment: Total No of Genes of GENCODE Release 43 by ahmad • 0
Hello, thanks for replying, by mistake I paste the wrong code. the following is the corrected gtf_43<-rtracklayer::import('gencode.v43…
Comment: Kallisto bustools for scRNA-seq by dsull ★ 4.0k
I have no idea what that is besides a bunch of jumbled sequences. You'll need look up the structure of the reads / library from wherever yo…
Comment: Aberrant splicing in bulk RNAseq by dsull ★ 4.0k
First thing: kallisto cannot interface with UMI-tools (kallisto doesn't use read headers and therefore you're stuck with "the kallisto way"…
Comment: Using Copy Number Alterations detected in other studies for the same tumor cell by lethalfang ▴ 90
There is some somatic SV study on these HCC1395: https://doi.org/10.1186/s13059-022-02816-6. There is also a CNA preprint from years ago b…
Comment: Somatic truth set by lethalfang ▴ 90
Just in case things are hard to find, for the WGS/WES, these are the data (what the file names mean: https://sites.google.com/view/seqc2/ho…
Comment: How to get subset of a Seurat object based on metadata? by jv ★ 1.0k
Hmm, not sure why `subset` doesn't match to '0:CD8 T cell' but maybe it's the ":"? An alternative option is the following: ``` idx <- whi…
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