updated 17 days ago by
Jeremy Leipzig
22k
•
written 10.5 years ago by
14134125465346445
★
3.6k
103
votes
42
replies
31k
views
34 follow
25
votes
11
replies
3.7k
views
6 follow
Forum:
Site Use Guidelines
updated 2 days ago by
Ram
43k
•
written 14.6 years ago by
Istvan Albert
100k
16
votes
10
replies
1.0k
views
6 follow
updated 27 days ago by
Madelaine Gogol
5.3k
•
written 28 days ago by
Ann
★
2.4k
7
votes
7
replies
1.1k
views
updated 10 days ago by
Dunois
★
2.5k
•
written 10 days ago by
AdviceSeeker
•
0
4
votes
2
replies
278
views
3
votes
3
replies
209
views
1
vote
2
replies
337
views
0
votes
0
replies
157
views
Recent Votes
Recent Locations •
All
United States, 1 minute ago
United Kingdom, 1 minute ago
France, 3 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 3 minutes ago
Bologna, 4 minutes ago
United Kingdom, 5 minutes ago
United States, 5 minutes ago
Recent Awards •
All
Popular Question to
zdiazmar
▴
30
Popular Question to
hkarakurt
▴
180
Student to
John Torcivia
▴
70
Popular Question to
bioinfo
▴
150
Popular Question to
jvijai
★
1.2k
Recent Replies
Comment: Treatment VS Control in Single Cell RNAseq analysis
by
kilcdincer
▴
10
Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis?
Can I reach its GitHub reposit…
Comment: BLAST using both nucleotides and taxonomic local databases
by
GenoMax
141k
> I ask this as some BLAST command fields as scinames or sblastnames do not give any output with a classic nt BLAST
If that information is…
Answer: BLAST using both nucleotides and taxonomic local databases
by
5heikki
11k
This has been discussed [many times][1]
[1]: https://www.biostars.org/p/76551/
Answer: why renaming Idents in Seurat object doesn't work?
by
Bioinfotec
▴
10
I think when you give indent to seuObj :
Idents(seuObj) <- 'RNA_snn_res.0.1'
You may wrongly assign other value to it such as …
Answer: ScRNAseq-How to correctly choose cell type marker genes
by
Bioinfotec
▴
10
In fact, there is no gold standard for cell type annotation. To achieve correct cell type classification, you can combine the two methos. F…
Answer: ScRNA data question
by
Bioinfotec
▴
10
In violin plot, a dot represents a cell. Actually, the straight lines you see in your infected image just means these cells have the same e…
Comment: Sequence read length shorter than flow cell specification
by
GenoMax
141k
> the have sent data with different sequencing read lengths: 55bp pair ended and 80bp single ended
If they sent data that is not what you…
Comment: How to know synonymous and non-synonymous SNPs from transcriptome sequencing
by
rohitsatyam102
▴
840
I have some off-the-chart dN/dS values for few genes (>20) when using your script on VCF obtained from a 20K plasmodium genomes (pf7K).
| …
Answer: Sequence read length shorter than flow cell specification
by
ATpoint
82k
It is the amount of reagent in the kit that determines read length. Sometimes index cycle reagents are allocated to R1/R2 or they used anot…
Comment: Why gatk VariantAnnotator required bam and coverage files
by
Pierre Lindenbaum
161k
you don't need the bam file https://gatk.broadinstitute.org/hc/en-us/articles/13832654601755-VariantAnnotator :
VariantAnnotator …
Comment: GAPIT p-value significance threshold
by
ginellegrenier
•
0
Hi, I was wondering if you have found a solution to this? Thanks!
Comment: PCA plot
by
jkim
▴
170
cross posted in bioconductor.
[https://support.bioconductor.org/p/9157968/][1]
[1]: https://support.bioconductor.org/p/9157968/
Comment: ScRNA data question
by
bk11
★
2.3k
Which normalization method did you use for your data? I am guessing you had used SCTransform normalization for your data. Can you plot usin…
Comment: How to make a TSS enrichment plot in ATAC-seq analysis?
by
sp
•
0
Hi Dan,
I was wondering if you found out how to make the same graph with NFR and NBR regions with different curves. I was able to recreate…
Traffic: 3146 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6