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Comment: Help writing code for a question on my homework
by
Joe
21k
This isn't really the right place for this question.
Please ask this as a separate new question, but only if it is bioinformatics related.
Comment: How to determine the total count for each gene in lymphotype B
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dalibenam64
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thank you very much for your response I'm really grateful !!
but I'm still confused because for example for patients I have 2 replicates…
Comment: Sequence quality drops in the 3' end of the left sequence in paired end. What co
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eggrandio
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But shouldn't quality drop at both 3'ends and not just on the left one?
Answer: Sequence quality drops in the 3' end of the left sequence in paired end. What co
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ATpoint
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That's normal and known: https://www.biostars.org/p/91624/
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Lhl
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is this what you are looking for?
https://github.com/imgag/ngs-bits/blob/master/doc/tools/BedpeGeneAnnotation.md
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1769mkc
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" you're forced to use it" this is sort of since I have use docker image and then pass the GSM id as list of input first to check if the th…
Comment: ncbi error report log for validate fastq issue
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I don't think this log is helpful. Can't you just get fastq download links via sra-explorer.info or the tool mentioned by @rob in his answe…
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Great! It looks like USER enzyme is used to cleave before the first read sequencing and formamidopyrimidine DNA N-glycosylase is used to cl…
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Hi,
First of all, you should never use DEGs for WGCNA. See @kevinblighe answer: [link][1].
> However, when it comes to module-trait analy…
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@camillab, Please look into Kevin Blighe's response in this [post][1] hope that helps.
[1]: https://www.biostars.org/p/357464/
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I managed to resolve the issue by passing absolute paths instead of relative ones.
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@chris Please look into @Hamid Ghaedi's well documented [post][1] on ORA and GSEA, Or [this][2] documentation. Hope this helps.
[1]: ht…
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Hi @liorglic,
Thank you for your prompt response.
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What is the accession for the project? Many — though not all — of the projects present in the NCBI SRA are also hosted in the European Nuc…
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