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251
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36
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30k
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27 follow
Forum: How Do You Manage Your Files & Directories For Your Projects ?
project-management file-management
updated 4 days ago by 38k • written 12.9 years ago by 153k
137
votes
42
replies
20k
views
22 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
meta
updated 4 hours ago by ★ 2.5k • written 9.8 years ago by ★ 1.6k
100
votes
36
replies
27k
views
33 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 5 days ago by ▴ 20 • written 9.4 years ago by ★ 3.6k
32
votes
5
replies
5.2k
views
Forum: ipython notebooks on bioinformatics and genomics
python
updated 5 days ago by 38k • written 7.7 years ago by ★ 2.1k
27
votes
19
replies
3.8k
views
10 follow
Forum: Google genomics cloud platform ?
genome cloud
updated 6 days ago by 38k • written 7.8 years ago by 12k
12
votes
20
replies
2.6k
views
Forum: Starting a career in Bioinformatics
career
updated 6 days ago by 38k • written 6.8 years ago by ▴ 10
12
votes
9
replies
5.8k
views
9 follow
Forum: Bioinformatics and wet lab science combined
career
updated 3 days ago by 38k • written 7.7 years ago by ▴ 40
11
votes
11
replies
3.0k
views
8 follow
Forum: Best open source genome browser in 2020
genome-browser genomics
updated 6 days ago by 38k • written 2.4 years ago by ▴ 30
10
votes
11
replies
3.2k
views
Forum: 48 Replicate RNA-Seq Study Points to Replicates Needed for DGE
RNA-seq differential-gene-expression
updated 6 days ago by 38k • written 7.9 years ago by ▴ 640
10
votes
5
replies
2.3k
views
Forum: What are your "model" examples for bioinformatics programming?
github RNA-Seq
updated 3 days ago by 38k • written 7.7 years ago by 7.4k
9
votes
5
replies
5.2k
views
Forum: Can I switch back to wet lab in phd after doing a master in bioinformatics?
biology wet-lab phd
updated 6 days ago by 38k • written 7.9 years ago by ▴ 10
8
votes
9
replies
2.3k
views
Forum: Suggestions for small tools to add to Galaxy
Galaxy
updated 6 days ago by 38k • written 7.9 years ago by 103k
6
votes
11
replies
1.9k
views
Forum: Archiving BAM files and analysis
archive BAM
updated 6 days ago by 38k • written 7.8 years ago by 11k
4
votes
2
replies
169
views
Forum: advice on course selection for a bioinformatics career.
career
updated 6 days ago by 97k • written 6 days ago by • 0
3
votes
8
replies
1.9k
views
7 follow
Forum: Bioinfomatic course or training for Computer Science professional
Training Courses
updated 6 days ago by 38k • written 5.5 years ago by • 0
3
votes
2
replies
1.1k
views
Forum: Msc in bioinformatics at Gent University
msc systems-biology masters belgium
updated 6 days ago by 38k • written 3.9 years ago by • 0
2
votes
4
replies
668
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 7 hours ago by 38k • written 7 months ago by ▴ 210
1
vote
2
replies
966
views
Forum: Humbly Requesting Interviews & Responses on How to Improve Bioinformatics Software
Software-Improvement survey
updated 6 days ago by 38k • written 4.2 years ago by • 0
1
vote
4
replies
1.5k
views
Forum: Estimating intra-strain variation from sequencing data
SNP
updated 5 days ago by 38k • written 7.8 years ago by ▴ 10
1
vote
1
reply
3.1k
views
Forum: RNAseq validation using qPCR
next-gen RNA-Seq
updated 5 days ago by 38k • written 7.8 years ago by • 0
1
vote
3
replies
2.1k
views
Forum: What are the good universities to do a Bioinformatic MSc?
education career MSc
updated 6 days ago by 38k • written 7.4 years ago by ▴ 20
0
votes
1
reply
1.6k
views
Forum: MSc bioinformatics at KU Leuven
education Masters career
updated 6 days ago by 38k • written 6.6 years ago by ▴ 30
0
votes
2
replies
1.6k
views
Forum: Invitation to submit book chapter (Bioinformatics and evolutionary biology) for spinger book (Only three chapters left)
Evolutionary-biology
updated 6 days ago by 38k • written 2.3 years ago by ▴ 30
0
votes
1
reply
1.2k
views
Forum: MS Bioinformatics after MBBS
MBBS career Masters Pakistan
updated 6 days ago by 38k • written 3.0 years ago by • 0
24 results • Page 1 of 1
Recent Votes
A: In Seurat, How Do nCount_RNA Differ from nFeature_RNA?
smoothing or binning bigWig file
List of Ongoing and Planned Long Read Sequencing studies?
Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
Answer: Read lengths greater than insert length
A: Changing Output From Gene ID to Symbol When Running findMarkers from Scran
Answer: BLAST Database error: No alias or index file found for nucleotide database
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Recent Replies
Comment: split fasta file to train deep learning model by shenwei356 7.9k
Excluding sequences containing any letter not belonging to the 20 [amino acids letters](https://github.com/shenwei356/bio/blob/master/seq/a…
Comment: split fasta file to train deep learning model by pinheirofabiano ▴ 10
@shenwei356, thank you very much for your help, perfect! But now I realized that some fasta sequences contain the letter "B", which is ou…
Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI by Mensur Dlakic ★ 23k
I think it depends on the speed of your local disks and the memory amount. On a single node, breaking up the database doesn't sound like a …
Comment: Sample size for population genetics by Jeremy Leipzig 21k
Other populations just make the model harder to generalize, not easier.
Comment: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum? by Vincent Laufer ★ 2.5k
i think there is some of that - my most upvoted comment of all time was a dismissive comment i made while extremely tired. for context i ha…
Comment: Molecular biologist / clinical pharmacologist (f/m/d) by Jeremy ▴ 770
Is this job on site in Vienna or remote?
Comment: smoothing or binning bigWig file by rls_08 ▴ 40
if you use bigwigCompare , that would not create a sliding window, but instead, it will output the mean for each bin, according to the -bin…
Comment: Sample size for population genetics by zimmer.schweiz • 0
Thank you so much for your answer. For common polygenic diseases, would it make sense to increase the number of populations sampled, in ord…
Answer: Sample size for population genetics by Jeremy Leipzig 21k
For a rare penetrant monogenic disease? A few cases. For a common polygenic disease or trait? 500k-10M
Answer: using GRanges metadata to constrain overlap searches between objects by seidel 11k
Rather than do all overlaps all the time for all samples, why not restrict the data by sample when you can. The code below works about 4 ti…
Comment: How to get gene from PSIBLAST resuts by Tom • 0
Hello, thank you for your answer, I have a question, Why the information from the GFF file and from the feature table is different? I see …
Comment: SNP ID (rsID) to Chr no. and Position by Jewahir • 0
Yeah, thank you for that!!
Comment: 1000 genomes hg38 with dbSNP rsid by Ram 38k
It should be pretty straightforward. Just to save you some pain, run these on the 1000g VCF once you download it: 1. `vt decompose -s` to …
Comment: 1000 genomes hg38 with dbSNP rsid by Vince ▴ 150
Yeah, I had some hope that I wouldn't need to mess with doing this ...
Answer: counting the unmapped reads by chemkhi.ali13 • 0
> Hi all, > > I have a sam file, my supervisor asked me to count the number of > unmapped reads, which command I should use? > > sam…
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