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460 results • Page
2 of 10
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Votes
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3
votes
3
replies
902
views
Forum:
Importance of Data Structures for Bioinformatics?
data-structures
updated 7 months ago by
Ram
43k • written 7 months ago by
S
• 0
19
votes
14
replies
2.1k
views
Forum:
What is the amount of sequencing data produced annually?
data
research
sequencing
updated 7 months ago by
Jeremy Leipzig
22k • written 7 months ago by
vincenthus
▴ 70
19
votes
10
replies
1.5k
views
Forum:
Pain points using commercial clouds
gpt
tinybio
updated 7 months ago by
vincenthus
▴ 70 • written 7 months ago by
Sasha
▴ 840
9
votes
6
replies
1.9k
views
6 follow
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
updated 7 months ago by
ATpoint
82k • written 17 months ago by
dlaehnemann
▴ 30
3
votes
2
replies
618
views
Forum:
How to contribute to the next edition of Biostars Handbook
handbook
updated 7 months ago by
Ram
43k • written 7 months ago by
Fouad
▴ 20
3
votes
6
replies
1.4k
views
6 follow
Forum:
Is Bioinformatics a Professional Degree?
career
degree
7 months ago by
anasjamshed
▴ 120
2
votes
5
replies
947
views
6 follow
Forum:
Biostar as a next generation version
meta
mobile-app
updated 6 months ago by
Ram
43k • written 7 months ago by
rj.rezwan
• 0
2
votes
9
replies
1.2k
views
Forum:
open source projects looking for contributors
open-source
updated 7 months ago by
vincenthus
▴ 70 • written 7 months ago by
claudiofr
▴ 20
0
votes
0
replies
534
views
Forum:
Recruiters: what do you expect on a junior bioinformatician?
career
skills
updated 8 months ago by
Ram
43k • written 8 months ago by
gallardodiazmiriam
▴ 20
3
votes
4
replies
1.4k
views
Forum:
Discussion: Uploading terabytes of data to NCBI SRA
NCBI
WGS
archiving
servers
remote
updated 8 months ago by
GenoMax
141k • written 8 months ago by
James Reeve
▴ 130
0
votes
0
replies
565
views
Forum:
I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 8 months ago by
Ram
43k • written 8 months ago by
RM123
▴ 10
1
vote
3
replies
768
views
Forum:
Spaceranger missing spatial coordinates [Discussion]
Visium
updated 8 months ago by
GenoMax
141k • written 8 months ago by
morovatunc
▴ 550
11
votes
8
replies
1.4k
views
6 follow
Forum:
How to write a review article in bioinformatics
article
review
updated 7 months ago by
Ram
43k • written 8 months ago by
joey
▴ 10
364
votes
58
replies
69k
views
44 follow
Forum:
Recommend Your Favorite Bioinformatics Books
education
books
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Istvan Albert
100k
1
vote
2
replies
18k
views
Forum:
Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear
latent
batch-effect
variable
GLM
9 months ago by
LauferVA
4.2k
0
votes
3
replies
3.8k
views
10 follow
Forum:
Discussion question: Cutoff for SNP phylogeny
Phylogenetics
SNP
written 16 months ago by
SushiRoll
▴ 120
2
votes
3
replies
784
views
Forum:
Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 9 months ago by
GenoMax
141k • written 9 months ago by
LauferVA
4.2k
0
votes
2
replies
1.3k
views
Forum:
[Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 10 months ago by
Asaf
10k • written 10 months ago by
Davide
• 0
33
votes
23
replies
4.1k
views
8 follow
Forum:
Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF
file-format
genomics
updated 10 months ago by
Jeremy Leipzig
22k • written 10 months ago by
LauferVA
4.2k
7
votes
8
replies
1.9k
views
Forum:
Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind
career
10 months ago by
K
• 0
2
votes
3
replies
858
views
Forum:
Mapping a predicted sequence to a genome
predicted
map
alignment
sequence
updated 10 months ago by
Mensur Dlakic
★ 27k • written 10 months ago by
Andy
• 0
0
votes
0
replies
440
views
Forum:
Recommendation sought for differential exon usage of a single gene
splicing
differential-exon-usage
updated 10 months ago by
Ram
43k • written 10 months ago by
nick_b55
▴ 10
7
votes
4
replies
1.1k
views
Forum:
[Meta] Use of AI
AI
Artificial-Intelligence
meta
ChatGPT
updated 10 months ago by
Ram
43k • written 10 months ago by
LauferVA
4.2k
2
votes
2
replies
595
views
Forum:
Colleges
Colleges
india
universities
updated 10 months ago by
Ram
43k • written 10 months ago by
mahimanepalli36
• 0
19
votes
15
replies
2.0k
views
6 follow
Forum:
Cross out line in Biostars
meta
updated 11 months ago by
Ram
43k • written 5.9 years ago by
Bastien Hervé
5.3k
121
votes
33
replies
39k
views
24 follow
Forum:
Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 11 months ago by
carlopecoraro2
★ 2.5k • written 10.7 years ago by
Eric Normandeau
11k
103
votes
42
replies
31k
views
34 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 15 days ago by
Jeremy Leipzig
22k • written 10.4 years ago by
14134125465346445
★ 3.6k
26
votes
12
replies
7.5k
views
6 follow
Forum:
Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 11 months ago by
zyan2005
▴ 10 • written 10.5 years ago by
johnblue81
▴ 50
0
votes
2
replies
764
views
Forum:
How to start in bioinformatics?
career
updated 11 months ago by
Ram
43k • written 12 months ago by
caffrey
• 0
4
votes
5
replies
1.4k
views
Forum:
I'm looking for a mentor in Bioinformatics
mentor
teaching
updated 10 weeks ago by
alva
• 0 • written 12 months ago by
cwaingartentrabajo
• 0
10
votes
15
replies
2.1k
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
freeze
ucsc-genome-browser
updated 10 months ago by
Jeremy Leipzig
22k • written 14 months ago by
Maximilian Haeussler
★ 1.6k
5
votes
4
replies
1.3k
views
Forum:
Best BAM viewer in 2022
sam
bam
updated 10 months ago by
Ram
43k • written 17 months ago by
Cornelius
▴ 70
1.2k
votes
206
replies
59k
views
108 follow
Forum:
What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 10 months ago by
Raony Guimarães
★ 1.4k • written 13.1 years ago by
Jeremy Leipzig
22k
15
votes
13
replies
4.1k
views
8 follow
Forum:
Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice
industry
phd
updated 3 months ago by
benformatics
3.9k • written 17 months ago by
buhbs
▴ 30
4
votes
5
replies
1.4k
views
6 follow
Forum:
Which Bioinformatics Master's degree is better?
career
masters
updated 11 months ago by
Ram
43k • written 18 months ago by
stelakarayani7
• 0
3
votes
6
replies
1.1k
views
Forum:
How to become a moderator and other ways of contributing to Biostars
meta
biostars
updated 11 months ago by
Ram
43k • written 18 months ago by
iraun
6.2k
3
votes
2
replies
845
views
Forum:
From protein-protein interaction networks to..
workflow
computational
knowledge
limitations
updated 10 months ago by
Ram
43k • written 22 months ago by
BioInfoBeginner
▴ 50
15
votes
11
replies
4.7k
views
9 follow
Forum:
Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA
DAVID
enrichment-analysis
-geneontology
updated 11 months ago by
Ram
43k • written 2.1 years ago by
mark.ziemann
★ 1.9k
0
votes
3
replies
923
views
Forum:
Project Topics on bioinformatic
Data-analysis
Coding
Molecular-biology
updated 11 months ago by
Ram
43k • written 2.2 years ago by
Abdullahi
• 0
3
votes
1
reply
908
views
Forum:
How to download multiple .gz files from Ensembl Protists database
wget
protist
ensembl
updated 9 weeks ago by
BioinfGuru
★ 1.7k • written 2.2 years ago by
rohitsatyam102
▴ 840
17
votes
14
replies
3.3k
views
Forum:
Asking for feedback on a Python library for computing alignments
alignment
Python
updated 10 months ago by
Alexander
▴ 220 • written 2.3 years ago by
bernhard.liebl
▴ 60
0
votes
1
reply
765
views
Forum:
What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 10 months ago by
Ram
43k • written 2.3 years ago by
carlopecoraro2
★ 2.5k
12
votes
7
replies
7.0k
views
Forum:
Differences between SMART-seq2, SMART-seq3, and 10x
cell
smartseq
UMIs
single
10x
updated 4 weeks ago by
dsull
★ 5.8k • written 2.6 years ago by
hamarillo
▴ 70
0
votes
0
replies
515
views
Forum:
Poll about a structured description of a tool, a pipeline
survey
pipeline
updated 10 months ago by
Ram
43k • written 2.7 years ago by
Anastasiya M
• 0
7
votes
20
replies
2.1k
views
Forum:
NGS RNA-Seq Analysis Pipeline Tophat vs STAR
STAR
RNA-Seq
TopHat
updated 11 months ago by
Ram
43k • written 3.3 years ago by
mikefeixu
▴ 10
11
votes
9
replies
2.4k
views
7 follow
Forum:
Feature Selection and Dimensionality Reduction in 10X scRNA-seq data
software-error
pca
scRNA-seq
updated 11 months ago by
Ram
43k • written 4.3 years ago by
ATpoint
82k
0
votes
0
replies
696
views
Forum:
where to get the site mutation rate of SARS-CoV-2?
sequence
sequencing
updated 11 months ago by
Ram
43k • written 3.3 years ago by
2001linana
▴ 40
6
votes
5
replies
1.6k
views
Forum:
Very generally speaking, what are valid criteria to decide that a sample is an outlier?
outliers
updated 11 months ago by
Ram
43k • written 3.3 years ago by
Aspire
▴ 300
7
votes
4
replies
1.2k
views
Forum:
Specific question on torturing the data until it confesses
ipa
gene-set-enrichment
statistics
updated 11 months ago by
Ram
43k • written 3.3 years ago by
Aspire
▴ 300
7
votes
3
replies
1.3k
views
Forum:
Is it still recommended to avoid macOS Big Sur?
mac
updated 11 months ago by
Ram
43k • written 3.3 years ago by
jrleary
▴ 210
460 results • Page
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Recent Replies
Comment: How to convert plink files to Hapmap Format
by
bk11
★ 2.3k
Please show me a few lines of phenotype updated .fam file. You can do `head your_data_phenoUP.fam` and paste result here. Please do not us…
Comment: GEMMA GWAS how to specify factor or numerical for covariates
by
Sofia
• 0
Hi, I don't have a solution to your question but I followed this tutorial and was helpful to me in my analysis https://youtu.be/NusV6duyvXs…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
by
GenoMax
141k
Catalog file lists the genomes included. There seem to be 71365 unique items in field 2. 2 Bacteria WP_000018326.1 4459…
Comment: How to convert plink files to Hapmap Format
by
Sofia
• 0
yes sure ! ![enter image description here][1] [1]: /media/images/f0f94f6c-4387-4188-a1aa-19152a89
Answer: AGeNT LocatIt
by
Greg
• 0
Give it more memory. ~10x more memory, or whatever you can give it, I had samples that weren't even close to being done after 3.5 da…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
by
Bertalan_Takacs
▴ 90
Thanks! I've already tried looking through these files, I need release 83. I am trying to find this information in the .catalog file of the…
Answer: Is it possible to get a list of representative genomes from a past RefSeq releas
by
GenoMax
141k
Possibly. You will need to know the RefSeq release version. Check in this directory: https://ftp.ncbi.nlm.nih.gov/refseq/release/release-ca…
Comment: How to convert plink files to Hapmap Format
by
bk11
★ 2.3k
Hey, can you please show me a few lines of your phenotype updated .fam file? I m seeing there are 7 columns in it, that might be the proble…
Comment: PCA plot (Suggestions Needed)
by
jkim
▴ 170
How much variance were explained by PC1 and PC2? It doesn't look like that the largest source of variation came from the genotype differenc…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
Lada
▴ 30
Thank you and yes, I agree going step back is the best option but I am in a hurry at the moment so I just need to stick to the transcriptom…
Comment: How to convert plink files to Hapmap Format
by
Sofia
• 0
Thank you so much for helping me out! I did the steps you mentioned but still got the same issue as shown in the snapshot ![enter image des…
Comment: different FeatureCounts output for the same data
by
Istvan Albert
100k
Make sure you are using the same version of featureCounts, it has changed how it deals with paired end reads. The exact same command will p…
Comment: Wilcox test using data slot (log normalized count values) of scRNA-seq between t
by
mropri
▴ 150
Thank you, will do Wilcox for now as I only have one control and one treatment, as I get more control and treatment samples, will stick wit…
Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
by
Istvan Albert
100k
I think the blog post lines up wit both of our statements. It seems that 2-way binning (pass/fail) already dramatically improves the calls…
Comment: Tax4Fun2 - error
by
drstalinantony28
• 0
You have to follow this step to solve the issue. (Mostly this problem occurs in the Windows version) 1. If you are using R studio in Windo…
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