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827 results • Page 1 of 17
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1.2k
votes
205
replies
48k
views
107 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 9 weeks ago by ▴ 250 • written 12.0 years ago by 21k
361
votes
57
replies
59k
views
43 follow
Forum: Recommend Your Favorite Bioinformatics Books
books education
updated 6 months ago by 84k • written 13.1 years ago by 97k
306
votes
65
replies
19k
views
48 follow
Forum: Your Favorite Bioinformatics Blogs (March 2010)
subjective
updated 6 months ago by 84k • written 13.1 years ago by 27k
294
votes
27
replies
41k
views
33 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing papers
updated 7 months ago by 38k • written 7.2 years ago by ★ 2.4k
290
votes
55
replies
14k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 6 weeks ago by 38k • written 9.9 years ago by 9.6k
286
votes
64
replies
18k
views
44 follow
Forum: Bioinformatics "Cheat Sheet"
cheat sheet
updated 6 months ago by 84k • written 12.0 years ago by 22k
279
votes
69
replies
18k
views
23 follow
Forum: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
subjective
updated 5 weeks ago by 38k • written 11.6 years ago by ▴ 160
262
votes
48
replies
20k
views
37 follow
Forum: Bioinformatics courses, workshops or training
Workshop Training Courses
updated 24 days ago by ▴ 970 • written 7.9 years ago by ★ 4.2k
251
votes
36
replies
30k
views
27 follow
Forum: How Do You Manage Your Files & Directories For Your Projects ?
project-management file-management
updated 5 hours ago by 38k • written 12.9 years ago by 153k
206
votes
58
replies
38k
views
31 follow
Forum: Will Python Take The Place Of R?
r statistics python biopython
updated 27 days ago by 38k • written 9.8 years ago by 9.5k
202
votes
41
replies
23k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics cram gatk galaxy
updated 6 weeks ago by 38k • written 8.4 years ago by ★ 5.2k
160
votes
22
replies
16k
views
19 follow
Forum: Advice For Newcomers To The Bioinformatics Field
advice career
updated 4 months ago by 38k • written 9.7 years ago by 9.5k
159
votes
38
replies
15k
views
22 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
updated 27 days ago by 38k • written 10.0 years ago by 97k
151
votes
39
replies
22k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics
updated 28 days ago by 38k • written 10.2 years ago by 3.0k
145
votes
56
replies
7.3k
views
17 follow
Forum: Suggesting The Removal Of Post Closing
biostars
updated 5 weeks ago by 38k • written 10.0 years ago by 97k
144
votes
62
replies
9.3k
views
23 follow
Forum: Is The Biostar Fading? (Updated For 2014)
meta biostars
updated 5 weeks ago by 38k • written 12.1 years ago by ★ 2.9k
136
votes
41
replies
20k
views
20 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
meta
updated 26 days ago by 38k • written 9.8 years ago by ★ 1.6k
126
votes
44
replies
27k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 14 days ago by 38k • written 6.5 years ago by ▴ 970
116
votes
31
replies
35k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 9 months ago by 38k • written 9.6 years ago by 11k
116
votes
35
replies
7.0k
views
18 follow
Forum: Is Biostar Killing The Bioinformatics Core?
core biostars
updated 5 weeks ago by 38k • written 10.0 years ago by 21k
115
votes
35
replies
36k
views
20 follow
Forum: Snakemake vs. Nextflow: strengths and weaknesses
snakemake nextflow Forum
updated 13 days ago by ▴ 30 • written 5.8 years ago by ▴ 760
106
votes
23
replies
20k
views
16 follow
Forum: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
bioinformatics
updated 20 days ago by 38k • written 9.1 years ago by ▴ 570
105
votes
46
replies
11k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 23 days ago by 38k • written 9.6 years ago by ★ 1.1k
100
votes
36
replies
27k
views
33 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 1 day ago by ▴ 20 • written 9.4 years ago by ★ 3.6k
99
votes
21
replies
7.9k
views
14 follow
Forum: How Has Bioinformatics Improved Over Time?
bioinformatics
updated 28 days ago by 38k • written 10.2 years ago by ▴ 370
93
votes
50
replies
14k
views
17 follow
Forum: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
personal-genomics 23andMe
updated 22 days ago by 38k • written 9.3 years ago by 97k
91
votes
20
replies
18k
views
15 follow
Forum: Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
N-of-one WGS RNA-Seq next-gen Exome
updated 5 months ago by 38k • written 8.8 years ago by 20k
88
votes
24
replies
4.7k
views
10 follow
Forum: How To Be Helpful As A Biostar Moderator/Editor?
biostars
updated 5 weeks ago by 38k • written 10.1 years ago by 1.9k
84
votes
22
replies
3.4k
views
12 follow
Forum: is fortran still used in bioinformatics?
FORTRAN R
updated 14 days ago by 38k • written 3.8 years ago by ▴ 180
83
votes
30
replies
5.5k
views
18 follow
Forum: Optimal design for bioinformatics "lab" space?
design lab-space
updated 8 months ago by 38k • written 7.9 years ago by 18k
82
votes
32
replies
6.4k
views
13 follow
Forum: Shall We Go Back To Stackexchange?
meta
updated 28 days ago by 38k • written 10.3 years ago by ★ 3.6k
81
votes
21
replies
4.1k
views
16 follow
Forum: [UPDATE] Thrown into a Bioinformatics Position
bioinformatics
updated 6 days ago by 38k • written 6.8 years ago by ★ 3.2k
80
votes
23
replies
4.3k
views
11 follow
Forum: Are we facing a bioinformatician shortage?
salary career
updated 14 days ago by 38k • written 8.4 years ago by ★ 3.0k
80
votes
34
replies
3.9k
views
11 follow
Forum: Authorship issues- how to resolve?
authorship
updated 11 weeks ago by 38k • written 7.8 years ago by ▴ 520
78
votes
31
replies
5.7k
views
14 follow
Forum: Do Bad Questions Even Exist?
biostars general education
updated 5 weeks ago by 38k • written 12.1 years ago by 10k
74
votes
14
replies
28k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 9 months ago by 38k • written 12.8 years ago by 4.5k
72
votes
28
replies
5.2k
views
10 follow
Forum: Bioinformatics commercial services as a risk factor for scientific misconduct
commercial-services ethics misconduct
updated 8 months ago by 38k • written 8.2 years ago by ▴ 90
72
votes
18
replies
6.7k
views
17 follow
Forum: What Is One Book Every Bioinformatician Should Read?
books
updated 24 days ago by 38k • written 9.7 years ago by 7.7k
70
votes
19
replies
4.5k
views
13 follow
Forum: Thrown Into A Bioinformatics Position
computational-analysis
updated 8 months ago by 38k • written 7.5 years ago by ▴ 170
67
votes
21
replies
5.0k
views
8 follow
Forum: Meta: Markdown in Biostars (now enabled)
meta
9 days ago by Ram 38k
66
votes
21
replies
5.6k
views
18 follow
Forum: Is there anyone who was a pure biologist?
next-gen
updated 17 days ago by 38k • written 8.9 years ago by ▴ 100
65
votes
26
replies
18k
views
13 follow
Forum: Macosx For Bioinformatics?
linux
updated 21 days ago by 38k • written 9.3 years ago by 11k
64
votes
29
replies
14k
views
15 follow
Forum: Fundamentals Of Designing Biological Databases?
database
updated 5 weeks ago by 38k • written 12.4 years ago by ▴ 130
64
votes
8
replies
7.8k
views
7 follow
Forum: Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 27 days ago by 38k • written 9.9 years ago by 20k
63
votes
9
replies
3.5k
views
Forum: Should The "Post Closing" Option Exist? Vote Now!
meta
updated 26 days ago by 38k • written 9.8 years ago by 97k
61
votes
70
replies
11k
views
21 follow
Forum: Biostar 2.0 released
meta biostars
updated 5 weeks ago by 38k • written 8.9 years ago by 97k
61
votes
16
replies
6.1k
views
14 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 10 weeks ago by ★ 1.3k • written 2.4 years ago by 7.9k
61
votes
11
replies
14k
views
9 follow
Forum: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
programming
updated 24 days ago by 38k • written 9.7 years ago by 19k
60
votes
14
replies
11k
views
14 follow
Forum: Interesting bioinformatics blogs (2017 edition)
blogs
updated 26 days ago by 38k • written 6.0 years ago by 47k
60
votes
28
replies
7.3k
views
27 follow
Forum: Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 14 days ago by 38k • written 8.5 years ago by 97k
827 results • Page 1 of 17
Recent Votes
Comment: bioinformatics problems solved by graphs data structure
Comment: bioinformatics problems solved by graphs data structure
Answer: How to analize multiple letters codes in COG IDs?
Answer: PCA in gene expression
Answer: PCA in gene expression
Comment: Enrichment analysis based on kegg for zebrafish
Question on number of possible alignments
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Recent Replies
Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
et mon français est assez bien pour comprendre ce que tu as écrit la ;-)
Comment: How to analize multiple letters codes in COG IDs? by Constanza • 0
Thanks for answering so fast, it was very helpful. I shouldn't pay much attention to if COGs are separated by a comma or not then. As long…
Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
well, because this is not you guys' private forum, there are other people participating (not native french speaking) , just to give a reaso…
Answer: How to get gene from PSIBLAST resuts by lieven.sterck 14k
what you likely will need to do: 1. get the ID of the protein that you are interested in (out of result from PSIBLAST) 2. lookup that ID…
Answer: How to analize multiple letters codes in COG IDs? by Mensur Dlakic ★ 23k
The meaning of individual letters is described in a well-known COG functional code: https://ecoliwiki.org/colipedia/index.php/Clusters_o…
Comment: How to find promoter sequence of a gene? by sunyeping ▴ 40
The organism is mice.
Answer: How to generate GFF/GTF file from cDNA transcipts FASTA file? by Pierre Lindenbaum 153k
BLAT your cDNAs to the reference. This should be a PSL file that can be converted to a psl->gff3 converter (e.g: https://github.com/gperte…
Comment: RNAseq: same reads + more complete scaffold = fewer DEGs? by Darked89 4.2k
You may try to check what happened with DEGs obtained using the 300 fragments assembly by getting the sequences of these genes and comparin…
Comment: ExomeDepth installation error by Medha • 0
Thanks, that did work. Also in next steps, there are some arguments like bam.files, I was wondering do we require to have multiple bam fil…
Comment: ExomeDepth installation error by jared.andrews07 ★ 14k
No idea, I don't use databricks. I'd read the docs, find a local expert to help you out, or contact their support, likely in that order.
Comment: ExomeDepth installation error by Medha • 0
Hi @jaredandrews07 thanks for reverting back. I am new to R and just want to make sure ExomeDepth is working for the first time. For the Rs…
Comment: Embedded stop codon in translated nucleotide sequences in DAMBE by Mensur Dlakic ★ 23k
It is not obvious to me what exact steps you did here, but here is what I do know: there will always be stop codons even in open reading fr…
Comment: Error with a function in ATAC-seq analysis by Chris ▴ 70
So you skip the GRanges()? Yes, no error anymore but I am not sure if that causes changing in downstream analysis.
Answer: ClusterProfiler enrichKEGG – remove organism name in plots? by jv ★ 1.0k
`stringr::str_remove` can remove " - Mus musculus (house mouse)" from the pathway names which are stored under `KEGGPATHID2NAME$to` in your…
Comment: Error with a function in ATAC-seq analysis by jv ★ 1.0k
run `union` on the data frames
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