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1,000 results • Page 2 of 20
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6
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12
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1.5k
views
Forum: How to decide when to have local hardware vs cloud computing?
hardware computational-resources cloud
9 months ago by Lluís R. ★ 1.2k
15
votes
11
replies
2.3k
views
7 follow
Forum: BioStars and ChatGPT
ChatGPT Meta GPT
updated 5 months ago by ▴ 590 • written 10 months ago by ▴ 350
18
votes
10
replies
1.8k
views
7 follow
Forum: Add artificial intelligence training related disclaimers to your profile
licensing AI
updated 10 months ago by 53k • written 10 months ago by 98k
7
votes
2
replies
645
views
Forum: Improvement of Wikipedia articles with bioinformatic subjects
Wikipedia Bioinformatics
8 months ago by Matthias Zepper 4.1k
5
votes
4
replies
978
views
Forum: Best BAM viewer in 2022
sam bam
updated 3 months ago by 40k • written 10 months ago by ▴ 70
1.2k
votes
206
replies
53k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 4 months ago by ★ 1.2k • written 12.5 years ago by 21k
10
votes
13
replies
2.5k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 10 months ago by 6.1k • written 10 months ago by ▴ 10
0
votes
2
replies
765
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 9 months ago by 40k • written 12 months ago by • 0
4
votes
5
replies
966
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
career masters
updated 4 months ago by 40k • written 11 months ago by • 0
2
votes
1
reply
664
views
Forum: Package is not available (for R version XXX)？ Manually download and install R packages
installation package R
updated 9 months ago by 5.5k • written 11 months ago by ▴ 30
3
votes
6
replies
825
views
Forum: How to become a moderator and other ways of contributing to Biostars
meta biostars
updated 4 months ago by 40k • written 12 months ago by 6.1k
2
votes
4
replies
974
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 6 months ago by 40k • written 13 months ago by ▴ 210
4
votes
4
replies
1.2k
views
Forum: Cloud Computing Services available?
resources Cloud-Computing
updated 9 months ago by 40k • written 15 months ago by ★ 2.4k
4
votes
2
replies
1.7k
views
Forum: Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology teaching
updated 9 months ago by 40k • written 14 months ago by 3.7k
3
votes
2
replies
675
views
Forum: From protein-protein interaction networks to..
workflow computational knowledge limitations
updated 3 months ago by 40k • written 15 months ago by ▴ 50
0
votes
0
replies
556
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf bcftools genotypes
updated 9 months ago by 40k • written 15 months ago by ▴ 30
24
votes
6
replies
4.6k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 10 months ago by 40k • written 5.1 years ago by ★ 9.3k
7
votes
8
replies
1.3k
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 10 months ago by 40k • written 16 months ago by 2.8k
0
votes
0
replies
505
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 9 months ago by 40k • written 16 months ago by ★ 1.5k
0
votes
0
replies
236
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 9 months ago by 40k • written 16 months ago by ▴ 10
7
votes
6
replies
1.3k
views
Forum: How to learn bioinformatics?
learning
updated 9 months ago by 40k • written 16 months ago by ▴ 10
2
votes
3
replies
684
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 9 months ago by 40k • written 16 months ago by ▴ 30
2
votes
2
replies
627
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS GWAS WGS
updated 9 months ago by 40k • written 17 months ago by • 0
0
votes
0
replies
528
views
Forum: commonly-used bioinformatics pipeline
Galaxy
updated 9 months ago by 40k • written 17 months ago by ▴ 120
13
votes
15
replies
3.0k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
meta biostars
updated 7 months ago by 40k • written 8.3 years ago by 98k
47
votes
24
replies
5.7k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 9 months ago by 40k • written 5.9 years ago by 53k
5
votes
8
replies
2.1k
views
Forum: SQL-why do we need it in Bioinformatics ?
SQL Programming
updated 9 months ago by 40k • written 18 months ago by ▴ 10
15
votes
11
replies
4.0k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 4 months ago by 40k • written 18 months ago by ★ 1.8k
29
votes
10
replies
5.8k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 6 months ago by 40k • written 5.6 years ago by 21k
3
votes
6
replies
1.9k
views
Forum: A Css For Small Screen Devices?
meta
updated 7 months ago by 40k • written 11.5 years ago by ★ 3.6k
0
votes
3
replies
769
views
Forum: Project Topics on bioinformatic
Data-analysis Coding Molecular-biology
updated 4 months ago by 40k • written 19 months ago by • 0
3
votes
4
replies
1.9k
views
Forum: Bioinformatics Research Topics/Areas that Everyone should take a look / Current Trends
research-area postgraduates
updated 8 months ago by 40k • written 19 months ago by ▴ 10
1
vote
0
replies
441
views
Forum: Continue exploring Bioinformatics and improving Bioinformatics Skills
postgraduate bioinformatics-skills
updated 8 months ago by 40k • written 19 months ago by ▴ 10
17
votes
14
replies
2.7k
views
Forum: Asking for feedback on a Python library for computing alignments
alignment Python
updated 3 months ago by ▴ 200 • written 20 months ago by ▴ 60
9
votes
8
replies
4.8k
views
9 follow
Forum: insert figure and code in the post of Biostars?
meta biostars
updated 6 months ago by 40k • written 8.3 years ago by ★ 2.2k
7
votes
2
replies
1.3k
views
Forum: What are the most influential Bioinformatics/Computational Biology papers/methods/discoveries of 2021?
snp papers survey
updated 7 months ago by 40k • written 21 months ago by ★ 1.2k
0
votes
1
reply
639
views
Forum: What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 3 months ago by 40k • written 21 months ago by ★ 2.4k
19
votes
1
reply
4.0k
views
Forum: Best programming language for bioinformatics - R Language
programming R
updated 6 months ago by 77k • written 2.6 years ago by ▴ 360
8
votes
9
replies
1.5k
views
Forum: Most useful public genomic/genetic databases/tools/applications
public-data genomics Genetics open-access
updated 7 months ago by 40k • written 22 months ago by ▴ 520
0
votes
0
replies
433
views
Forum: Targeted sequencing and phylogenetics
SC sequencing exome gene_panel
updated 7 months ago by 40k • written 23 months ago by • 0
2
votes
8
replies
1.5k
views
Forum: Non biology & computer professional interested in bioinformatics
computer-science machine-learning
updated 7 months ago by 40k • written 24 months ago by • 0
1
vote
0
replies
653
views
Forum: Questions about going into Bioinformatics from an IT career
career
updated 6 months ago by 40k • written 24 months ago by ▴ 10
0
votes
0
replies
456
views
Forum: Extraction of s-farnesyl cysteine, s-palmitoyl cysteine, disulfide , metal binding
uniprot
updated 10 months ago by 40k • written 2.0 years ago by ▴ 10
37
votes
30
replies
4.4k
views
7 follow
Forum: Spam In Rss Feeds
meta RSS
updated 7 months ago by 40k • written 10.7 years ago by 5.3k
17
votes
8
replies
2.2k
views
7 follow
Forum: Where should a biologist start when learning computational biology & systems biology
data-science systems-biology computational-biology
updated 6 months ago by 40k • written 2.1 years ago by ▴ 50
8
votes
11
replies
1.3k
views
6 follow
Forum: Paper: Ten simple rules for biologists initiating a collaboration with computer scientists
article opinion
updated 6 months ago by 40k • written 2.9 years ago by 13k
0
votes
0
replies
425
views
Forum: Poll about a structured description of a tool, a pipeline
survey pipeline
updated 3 months ago by 40k • written 2.2 years ago by • 0
6
votes
4
replies
923
views
Forum: What are the major advances in Bioinformatics since 2016
Bioinformatics
updated 6 months ago by 40k • written 2.2 years ago by ▴ 30
20
votes
12
replies
38k
views
7 follow
Forum: When To Use Sed Awk Over Perl Or Python
perl python awk
updated 7 months ago by 40k • written 9.8 years ago by 9.7k
6
votes
12
replies
13k
views
11 follow
Forum: Online/remote/distance learning/ - partime/fulltime - PhD, Bioinformatics in USA
PhD university
updated 6 months ago by 40k • written 7.0 years ago by ▴ 20
1,000 results • Page 2 of 20
Recent Votes
Answer: tensorQTL interaction issue
Answer: Script for getting summary statistic of any genome using GTF or GFF3 ?
Comment: How do you validate and verify your pipeline's software updates?
Comment: How do you validate and verify your pipeline's software updates?
Answer: GSEA with GO and KEGG datasets
GSEA with GO and KEGG datasets
Answer: Exporting DEGs obtained from DESeq2
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Recent Replies
Comment: How to get sample names and genotype for SNP in multi-sample VCF file by Kevin Blighe 86k
It is difficult for me to comment, as I am not too informed on your IT infrastructure. What I can say is that it would be better to run the…
Answer: Converting from BED to SAF/GFF by alejandrogzi ▴ 30
I recently developed [bed2gff](https://github.com/alejandrogzi/bed2gff) to quickly convert .bed files to a gff3 format, a tool written in R…
Comment: Convert bed12 to GFF by alejandrogzi ▴ 30
Now there is [bed2gff](https://github.com/alejandrogzi/bed2gff), if you want to work only with a gff file!
Comment: Converting different annotation file formats (GTF/GFF/BED) to each other by alejandrogzi ▴ 30
now there is also [bed2gff](https://github.com/alejandrogzi/bed2gff) if you want to convert .bed files to .gff3 files!
Answer: How Do I Convert From Bed Format To Gff Format? by alejandrogzi ▴ 30
I recently developed [bed2gff](https://github.com/alejandrogzi/bed2gff) to quickly convert .bed files to a gff3 format, a tool written in R…
Answer: tensorQTL interaction issue by Solal • 0
Writing a solution for anyone interested. The issue stems from a dosage error, some variant contains only heterozygous individuals and no h…
Answer: The Biostar Handbook. A bioinformatics e-book for beginners. by Qboy • 0
Great book! I love using it to help my mentees to learn bioinformatics better. It would be also fantastic to compile all other necessary Pr…
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
Thanks. I'll try.
Comment: How to get sample names and genotype for SNP in multi-sample VCF file by avelarbio46 ▴ 30
Hi! I'm trying to parallelize your code (to run on a bunch of files), but it is not working because of multiple processes spawning. Do you …
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by GenoMax 135k
> so I don't think the genome size is available. Perhaps not for your specific strain but plenty of other Kpn genomes are available and th…
Comment: Kimura% of calcDivergenceFromAlign output by 睿紘 • 0
For additional information, "Coverage for each repeat class and divergence (Kimura)" is also the result from calcDivergenceFromAlign.pl
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
By the way, I run Rockhopper on the untrimmed files, and the full match percentage grew to 20%-30%, and there are 1552 transcripts in the u…
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
Here are the total bases in 4 fastq files (after adapter removal): 1,027,852,411, 1,041,895,083, 1,121,786,520, 1,299,721,929. I just rem…
Comment: Understanding mother and father alleles in VCF file by c. • 0
actually they didn't tell me which relatives were from mother side and which from father side, you are right. But how can you find related …
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by GenoMax 135k
Correct. Data that went into the assembly.
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