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1,000 results • Page 2 of 20
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440
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Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
10 months ago by goddy93 • 0
3
votes
1
reply
451
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 10 months ago by 39k • written 10 months ago by • 0
5
votes
2
replies
784
views
Forum: Skills for industry career in bioinformatics
industry
updated 10 months ago by 12k • written 10 months ago by ▴ 10
9
votes
6
replies
839
views
Forum: Programming languages in industry
programming language
updated 10 months ago by 9.6k • written 10 months ago by ▴ 30
2
votes
6
replies
845
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
11 months ago by Antonio R. Franco ★ 5.1k
1
vote
0
replies
440
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
11 months ago by Francesco ▴ 20
3
votes
2
replies
573
views
Forum: From protein-protein interaction networks to..
limitations tools knowledge computational workflow
11 months ago by BioInfoBeginner ▴ 50
0
votes
0
replies
458
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf bcftools genotypes
updated 5 months ago by 39k • written 11 months ago by ▴ 30
24
votes
6
replies
4.4k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 6 months ago by 39k • written 4.8 years ago by ★ 9.3k
7
votes
8
replies
1.1k
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 6 months ago by 39k • written 12 months ago by 2.7k
0
votes
0
replies
420
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 5 months ago by 39k • written 12 months ago by ★ 1.5k
1
vote
3
replies
1.4k
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 12 months ago by 3.6k • written 12 months ago by • 0
3
votes
3
replies
594
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 12 months ago by 26k • written 12 months ago by ★ 2.9k
0
votes
0
replies
163
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 5 months ago by 39k • written 12 months ago by ▴ 10
34
votes
11
replies
8.2k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 9 months ago by 39k • written 7.6 years ago by ★ 9.3k
7
votes
6
replies
1.0k
views
Forum: How to learn bioinformatics?
learning
updated 5 months ago by 39k • written 12 months ago by ▴ 10
2
votes
3
replies
546
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 5 months ago by 39k • written 12 months ago by ▴ 30
1
vote
6
replies
708
views
Forum: Bioinformatics Software Developer job interview steps and what to expect?
interview software-development
updated 11 months ago by 39k • written 13 months ago by • 0
2
votes
2
replies
524
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS GWAS WGS
updated 5 months ago by 39k • written 13 months ago by • 0
0
votes
0
replies
447
views
Forum: commonly-used bioinformatics pipeline
Galaxy
updated 5 months ago by 39k • written 13 months ago by ▴ 120
13
votes
15
replies
2.7k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
meta biostars
updated 3 months ago by 39k • written 7.9 years ago by 98k
47
votes
24
replies
5.2k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 5 months ago by 39k • written 5.6 years ago by 52k
5
votes
8
replies
1.7k
views
Forum: SQL-why do we need it in Bioinformatics ?
SQL Programming
updated 5 months ago by 39k • written 13 months ago by ▴ 10
2
votes
2
replies
705
views
Forum: Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs bioinformatician
updated 11 months ago by 39k • written 14 months ago by ▴ 20
15
votes
11
replies
3.7k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 11 days ago by 39k • written 14 months ago by ★ 1.8k
29
votes
10
replies
5.3k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 11 weeks ago by 39k • written 5.2 years ago by 21k
3
votes
6
replies
1.8k
views
Forum: A Css For Small Screen Devices?
meta
updated 3 months ago by 39k • written 11.1 years ago by ★ 3.6k
12
votes
6
replies
1.3k
views
Forum: M.S. Bioinformatics and Computational Biology: Will I be able to find a job after graduation? I'm worried...
career Masters Graduation
updated 11 months ago by 39k • written 15 months ago by ▴ 20
0
votes
3
replies
589
views
Forum: Project Topics on bioinformatic
Data-analysis Coding Molecular-biology
updated 11 days ago by 39k • written 15 months ago by • 0
3
votes
4
replies
1.6k
views
Forum: Bioinformatics Research Topics/Areas that Everyone should take a look / Current Trends
research-area postgraduates
updated 3 months ago by 39k • written 15 months ago by ▴ 10
1
vote
0
replies
378
views
Forum: Continue exploring Bioinformatics and improving Bioinformatics Skills
postgraduate bioinformatics-skills
updated 3 months ago by 39k • written 15 months ago by ▴ 10
6
votes
5
replies
3.7k
views
6 follow
Forum: How is the job outlook in 2020 ?
career outlook
updated 11 months ago by 39k • written 4.9 years ago by • 0
361
votes
57
replies
61k
views
43 follow
Forum: Recommend Your Favorite Bioinformatics Books
books education
updated 8 months ago by 85k • written 13.2 years ago by 98k
9
votes
8
replies
4.6k
views
9 follow
Forum: insert figure and code in the post of Biostars?
meta biostars
updated 11 weeks ago by 39k • written 8.0 years ago by ★ 2.1k
7
votes
2
replies
1.2k
views
Forum: What are the most influential Bioinformatics/Computational Biology papers/methods/discoveries of 2021?
snp papers survey
updated 3 months ago by 39k • written 17 months ago by ★ 1.2k
19
votes
1
reply
3.7k
views
Forum: Best programming language for bioinformatics - R Language
programming R
updated 11 weeks ago by 72k • written 2.3 years ago by ▴ 300
9
votes
11
replies
2.5k
views
6 follow
Forum: 2021: state and usage of compressed file standards better than BAM and FASTQ
bam compression fastq
updated 10 months ago by ▴ 100 • written 2.1 years ago by ★ 5.2k
8
votes
9
replies
1.4k
views
Forum: Most useful public genomic/genetic databases/tools/applications
public-data genomics Genetics open-access
updated 3 months ago by 39k • written 18 months ago by ▴ 520
74
votes
14
replies
28k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 11 months ago by 39k • written 13.0 years ago by 4.5k
0
votes
0
replies
377
views
Forum: Targeted sequencing and phylogenetics
SC sequencing exome gene_panel
updated 3 months ago by 39k • written 18 months ago by • 0
2
votes
8
replies
1.3k
views
Forum: Non biology & computer professional interested in bioinformatics
computer-science machine-learning
updated 3 months ago by 39k • written 19 months ago by • 0
0
votes
0
replies
459
views
Forum: PhD Bioinformatics Remote positions
PhD
updated 11 months ago by 39k • written 19 months ago by ▴ 10
1
vote
0
replies
576
views
Forum: Questions about going into Bioinformatics from an IT career
career
updated 11 weeks ago by 39k • written 20 months ago by ▴ 10
294
votes
27
replies
42k
views
33 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing papers
updated 10 months ago by 39k • written 7.3 years ago by ★ 2.4k
0
votes
0
replies
394
views
Forum: Extraction of s-farnesyl cysteine, s-palmitoyl cysteine, disulfide , metal binding
uniprot
updated 6 months ago by 39k • written 20 months ago by ▴ 10
37
votes
30
replies
4.1k
views
7 follow
Forum: Spam In Rss Feeds
meta RSS
updated 3 months ago by 39k • written 10.3 years ago by 5.3k
17
votes
8
replies
2.0k
views
7 follow
Forum: Where should a biologist start when learning computational biology & systems biology
data-science systems-biology computational-biology
updated 10 weeks ago by 39k • written 21 months ago by ▴ 50
8
votes
11
replies
1.2k
views
6 follow
Forum: Paper: Ten simple rules for biologists initiating a collaboration with computer scientists
article opinion
updated 11 weeks ago by 39k • written 2.6 years ago by 13k
26
votes
6
replies
5.0k
views
9 follow
Forum: Making a living with bioinformatics
career
updated 11 months ago by 39k • written 5.0 years ago by ▴ 150
6
votes
4
replies
822
views
Forum: What are the major advances in Bioinformatics since 2016
Bioinformatics
updated 10 weeks ago by 39k • written 22 months ago by ▴ 30
1,000 results • Page 2 of 20
Recent Votes
Answer: RNAseq Data and Pipeline
Comment: Salmon Index
Comment: Salmon Index
Resequencing data of pangenome
A: PolyPhen Humdiv vs HumVar discrepancies
A: How To Get Annotation For Bed File From Another Bed File
Answer: Salmon Index
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Recent Replies
Answer: What is the best way to clean bulk RNA-seq data? by swbarnes2 13k
There really is no "best". Just find something reasonable, and document what you chose.
Comment: How to deal with duplicated gene IDs in TCGA RNA expression data? by Vincent Laufer ★ 2.8k
ok interesting. Do all, most, some, or a few of the genes have repeated lines. Is there a handy link to the exact file you are looking at?
Answer: Make a BedGraph file by bhumm ▴ 40
Bedtools window piped into genomecov? https://bedtools.readthedocs.io/en/latest/content/tools/window.html https://bedtools.readthedocs.io…
Answer: RNAseq Data and Pipeline by ATpoint 72k
STAR counts are the raw counts, that is appropriate for DESeq2.
Comment: RNAseq Data and Pipeline by swbarnes2 13k
STAR has a GeneCounts output that looks as you describe; three columns, depending on whether one thinks the prep is unstranded, or stranded…
Comment: RNAseq Data and Pipeline by Ram 39k
There is at least one more step that you haven't shared, isn't there? This line alone does not get you the data. You don't need to give us …
Comment: RNAseq Data and Pipeline by turcoa1 • 0
my entire code is not done. All I am trying to understand is if the STAR - counts downloaded from this query have raw reads. There are head…
Comment: RNAseq Data and Pipeline by Ram 39k
Please provide your entire code so those of us wishing to do a quick test can download and check for ourselves. Also, please use the format…
Comment: RNAseq Data and Pipeline by turcoa1 • 0
```r query <- GDCquery( project = "TCGA-THCA", data.category = "Transcriptome Profiling", data.type = "Gene Expression Quantificatio…
Comment: NCBI Common Taxonomy Tree by GenoMax 129k
It may be best to email NCBI help desk with these questions. Post their response here once you hear back from them.
Comment: RNAseq Data and Pipeline by Ram 39k
What data are you downloading? Can you show us your GDCquery commands please?
Comment: Salmon Index by ashleymb1116 • 0
I am working on cow, Bos Taurus. The Arabidopsis code was an example code that was on Salmon's github and an example for indexing they gave…
Comment: Salmon Index by GenoMax 129k
> I am using the Bos Taurus files Which organism are you actually working on? You have mentioned three so far, arabidopsis, human and now …
Comment: Salmon Index by ashleymb1116 • 0
Thank you, yes I am using the newer version of Ensembl. Above with Arabidopsis is the example Salmon gave, I am using the Bos Taurus files.…
Comment: Query qbout single cell sequencing by Ram 39k
Show us your exact cellranger and STARsolo commands, the full output to STARsolo as well as your thoughts on why it's not working for you.
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