Limit : this year
all time today this week this month this year
1,000 results • Page 2 of 20
Sort: Views
Rank Views Votes Replies
38
votes
19
replies
10k
views
10 follow
Forum: Kallisto New RNA-seq quantification method discussion
RNA-Seq
updated 8 months ago by 41k • written 7.7 years ago by ▴ 550
34
votes
12
replies
10k
views
9 follow
Forum: Is going back to the wet lab worth it?
careerwet-lab
updated 7 months ago by 41k • written 6.9 years ago by ▴ 810
3
votes
2
replies
10.0k
views
Forum: How To Provide Reference Sequence Dictionary To Reordersam?
picard gatk
updated 9 months ago by 41k • written 10.0 years ago by 8.2k
10
votes
6
replies
9.9k
views
Forum: Is it worth getting a Masters in Bioinformatics, financially?
career
updated 9 months ago by 41k • written 9.5 years ago by ▴ 20
0
votes
2
replies
9.6k
views
Forum: Secondary Structure Prediction software RNA/DNA
dna secondary-structure software rna
updated 9 months ago by 41k • written 9.1 years ago by ★ 3.6k
86
votes
29
replies
9.4k
views
9 follow
Forum: What is the future of EMBL-EBI (and European bioinformatics in general) in case of a 'Brexit'?
EU brexit EBI politics
updated 8 months ago by 41k • written 7.5 years ago by 53k
50
votes
8
replies
9.3k
views
6 follow
Forum: Encode Commentary From Dan Graur
encode
updated 9 months ago by 41k • written 10.8 years ago by 16k
5
votes
4
replies
9.3k
views
Forum: List of unresolved problems in Computational Biology / Bioinformatics?
computational-biology problems
updated 8 months ago by 41k • written 8.9 years ago by ★ 1.3k
11
votes
10
replies
9.1k
views
Forum: Looking For Bioinformatics Job In Germany
bioinformatician career
updated 9 months ago by 41k • written 9.7 years ago by ▴ 520
79
votes
35
replies
9.0k
views
17 follow
Forum: Do bioinformaticians often break molecular biologists' hearts by being the first author?
authorship career
updated 6 months ago by • 0 • written 8.1 years ago by ▴ 650
244
votes
36
replies
8.9k
views
32 follow
Forum: Good Habit for Bioinformatics Analyst or Scientist
Analyst Scientist
updated 8 months ago by 41k • written 7.6 years ago by ★ 9.3k
13
votes
7
replies
8.8k
views
Forum: The struggle between fastq and fastq.gz, compressed v/s uncompressed file formats
fastq
updated 6 months ago by 41k • written 6.4 years ago by 5.8k
50
votes
4
replies
8.8k
views
Forum: How to add images to a Biostars post
how-to
10 months ago by Ram 41k
22
votes
14
replies
8.7k
views
6 follow
Forum: Too late to switch to Bioinformatics?
education career
updated 9 months ago by 41k • written 9.5 years ago by ▴ 30
21
votes
17
replies
8.7k
views
7 follow
Forum: In YOUR personal opinion, who are the top 5 bioinformatics researchers in NGS in 21st century?
next-gen
updated 7 months ago by 41k • written 6.9 years ago by ▴ 10
27
votes
21
replies
8.6k
views
9 follow
Forum: Better for my career: Degree in computer science or Phd in bioinformatics?
computer-science phd
updated 8 months ago by 41k • written 7.2 years ago by ★ 1.6k
99
votes
21
replies
8.6k
views
14 follow
Forum: How Has Bioinformatics Improved Over Time?
bioinformatics
updated 9 months ago by 41k • written 10.9 years ago by ▴ 370
12
votes
4
replies
8.5k
views
Forum: Bioinformatics/Biotech Firms In India
career
updated 9 months ago by 41k • written 11.6 years ago by ▴ 110
30
votes
19
replies
8.5k
views
6 follow
Forum: Programming language use distribution from recent programs / articles
programming-language programs
updated 6 months ago by 41k • written 6.6 years ago by 11k
9
votes
4
replies
8.4k
views
Forum: Biofinysics - How does bowtie2 assign MAPQ scores?
alignment bowtie2
updated 9 months ago by 41k • written 9.3 years ago by 8.1k
9
votes
19
replies
8.3k
views
Forum: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Same Input Parameters With Openmp Enabled.
velvet genome
updated 9 months ago by 41k • written 10.0 years ago by ▴ 650
10
votes
3
replies
8.3k
views
Forum: Got Multiple Cpus? Activate Them With Gnu Parallel
parallel command-line ngs
updated 9 months ago by 41k • written 10.0 years ago by ★ 4.4k
145
votes
56
replies
8.3k
views
17 follow
Forum: Suggesting The Removal Of Post Closing
biostars
updated 9 months ago by 41k • written 10.7 years ago by 99k
46
votes
9
replies
8.3k
views
10 follow
Forum: Bioinformatics For Clinicians - What To Teach Them?
education
updated 9 months ago by 41k • written 10.0 years ago by ▴ 140
13
votes
5
replies
8.2k
views
Forum: Funding Opportunities In Bioinformatics
grant
updated 9 months ago by 41k • written 10.8 years ago by 20k
47
votes
37
replies
8.2k
views
12 follow
Forum: The Organisation Of Really Contrived Acronyms (Orca)
acronyms
updated 9 months ago by 41k • written 10.3 years ago by 2.3k
49
votes
36
replies
8.2k
views
11 follow
Forum: New features and bug fixes for Biostar to work on during Google Summer of Code
meta biostars gsoc
updated 9 months ago by 41k • written 9.6 years ago by ▴ 110
64
votes
8
replies
8.1k
views
7 follow
Forum: Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 9 months ago by 41k • written 10.6 years ago by 20k
22
votes
15
replies
8.0k
views
11 follow
Forum: RNASeq user experience with Novogene?
RNA-Seq
updated 6 months ago by 41k • written 5.4 years ago by ▴ 80
68
votes
48
replies
8.0k
views
16 follow
Forum: Stranger Things: unexpected limitations of popular tools
samtools hisat2
updated 6 months ago by 41k • written 6.4 years ago by 99k
26
votes
0
replies
8.0k
views
Forum: Heng Li of BWA and Samtools uses this
uses-this
updated 9 months ago by 41k • written 9.2 years ago by 99k
19
votes
9
replies
8.0k
views
6 follow
Forum: How to support bioinformatics tools via Biostars: prefill and watch tags, reply via email
biostars
updated 9 months ago by 41k • written 9.6 years ago by 99k
3
votes
5
replies
7.9k
views
Forum: PopGenome nucleotide diversity
next-gen SNP R gene
updated 8 months ago by 41k • written 7.8 years ago by ▴ 10
28
votes
14
replies
7.9k
views
8 follow
Forum: Should I work first in a Bioinformatics company or get a Ph. D.?
Biochemistry PhD career
updated 8 months ago by 41k • written 7.6 years ago by ▴ 20
60
votes
28
replies
7.9k
views
27 follow
Forum: Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 9 months ago by 41k • written 9.2 years ago by 99k
116
votes
35
replies
7.8k
views
18 follow
Forum: Is Biostar Killing The Bioinformatics Core?
core biostars
updated 9 months ago by 41k • written 10.7 years ago by 22k
5
votes
4
replies
7.7k
views
Forum: Masters In Bioinformatics Vs Masters In Information Technology (Computer Science)
career
updated 9 months ago by 41k • written 9.7 years ago by • 0
34
votes
19
replies
7.6k
views
12 follow
Forum: Programming Language In Bioinformatics
perl python
updated 9 months ago by 41k • written 10.6 years ago by ▴ 260
8
votes
12
replies
7.6k
views
9 follow
Forum: Mac Osx Confusing Vcf With Vcard
vcf
updated 9 months ago by 41k • written 10.7 years ago by ▴ 80
5
votes
6
replies
7.5k
views
Forum: Msc Bioinformatics Project Ideas
project
updated 9 months ago by 41k • written 11.6 years ago by ▴ 50
42
votes
15
replies
7.5k
views
8 follow
Forum: Directions In Bioinformatics And Web-Based Data Visualization: Revisiting Javascript?
data-visualization python r
updated 9 months ago by 41k • written 11.1 years ago by 5.8k
16
votes
6
replies
7.5k
views
7 follow
Forum: What computer skills should I put on my resume?
resume genome
updated 6 months ago by 41k • written 6.0 years ago by ▴ 30
29
votes
4
replies
7.4k
views
Forum: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
software-error bowtie2 bioconda conda tbb
updated 9 months ago by 41k • written 2.8 years ago by ▴ 240
61
votes
16
replies
7.4k
views
14 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 11 months ago by ★ 1.3k • written 3.1 years ago by 8.3k
82
votes
32
replies
7.3k
views
13 follow
Forum: Shall We Go Back To Stackexchange?
meta
updated 9 months ago by 41k • written 11.0 years ago by ★ 3.6k
68
votes
22
replies
7.3k
views
16 follow
Forum: Learning Python: list of resources
python
updated 8 months ago by 41k • written 7.1 years ago by ★ 2.8k
26
votes
12
replies
7.3k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 7 months ago by ▴ 10 • written 10.1 years ago by ▴ 50
72
votes
18
replies
7.2k
views
17 follow
Forum: What Is One Book Every Bioinformatician Should Read?
books
updated 9 months ago by 41k • written 10.4 years ago by 8.1k
129
votes
38
replies
7.2k
views
21 follow
Forum: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
bioinformatics
updated 6 months ago by 41k • written 4.7 years ago by 99k
2
votes
3
replies
7.2k
views
Forum: How To Correctly Speed Up Blast Using Num_Threads
blast blast-plus
updated 9 months ago by 41k • written 9.8 years ago by ▴ 40
1,000 results • Page 2 of 20
Recent Votes
Comment: Annotation Visualization IGV
Comment: Annotation Visualization IGV
Answer: Execute R command on specific termimal
Answer: Where can I get a list of SNPs mapping overlapping genes in humans?
Comment: How do I know how much memory to use when piping to with BBMap suite (OutOfMemor
A: difference between GSEA and Gene Ontology
Answer: Does the Minion demultiplex when basecalling?
Recent Locations • All
Cambridge, MA, 2 minutes ago
Russia, 5 minutes ago
South Korea, 8 minutes ago
Egypt, 9 minutes ago
South Korea, 9 minutes ago
Hong Kong, 12 minutes ago
United States, 15 minutes ago
Recent Awards • All
Popular Question to samreen.jasvi • 0
Teacher to h.mon 35k
Scholar to jared.andrews07 ★ 16k
Popular Question to Mr Locuace ▴ 150
Popular Question to benjamin.pyenson • 0
Popular Question to Malachi Griffith 19k
Popular Question to awhale01 • 0
Recent Replies
Comment: Resolving over clustered NGS with Q-scores by sam.himes92 • 0
The system that we used was [Aviti][1]. Our sequencing core was the one who quantified the loading/library concentration. Sorry I don't hav…
Comment: Where can I get a list of SNPs mapping overlapping genes in humans? by Alex Reynolds 35k
I modified the answer with an approach for that use case.
Comment: Where can I get a list of SNPs mapping overlapping genes in humans? by Ram 41k
OP is looking for overlapping genes - genes with presumably different gene IDs that share some loci. I think the `genes.bed` creation logic…
Comment: Where can I get a list of SNPs mapping overlapping genes in humans? by Alex Reynolds 35k
Note: The file `snps.bed` will be very large. You'll need sufficient disk space for this step.
Answer: Where can I get a list of SNPs mapping overlapping genes in humans? by Alex Reynolds 35k
Given files `genes.bed` and `snps.bed`, you could do something like: ``` $ bedmap --echo --echo-map-id --delim '\t' genes.bed snps.bed > a…
Answer: How to add exon annotations to genome annotation by alex.zaccaron ▴ 380
You can use [AGAT][1] to process your annotation file to add the missing exons. I believe `agat_convert_sp_gxf2gxf.pl -g no_exons.gff -o wi…
Comment: Annotation Visualization IGV by Pierre Lindenbaum 158k
and you got answer that should be validate (green tick), or people asked you questions but got no answers.
Comment: Annotation Visualization IGV by awhale01 • 0
Correct I have asked those questions before.
Comment: Annotation Visualization IGV by Pierre Lindenbaum 158k
you asked questions before: review, comment and/or validate them please: https://www.biostars.org/p/9530777/ ; https://www.biostars.org/p/9…
Comment: Ambient RNA removal method that generates whole (integer) counts by EK • 0
Thanks, Jared. Sounds like rounding counts is the simplest approach for now. :)
Comment: Resolving over clustered NGS with Q-scores by Trivas ★ 1.5k
Could you tell us which sequencer you used, how you quantified your library size and concentration, and what your loading concentration was…
Comment: Resolving over clustered NGS with Q-scores by sam.himes92 • 0
I should have mentioned, we ran both Read 1 and 2 well past the points of interest. For each read we ran 75 cycles.
Answer: Resolving over clustered NGS with Q-scores by Trivas ★ 1.5k
It might be because Illumina recommends 26 cycles for Read 1: https://knowledge.illumina.com/instrumentation/general/instrumentation-genera…
Comment: Resolving over clustered NGS with Q-scores by sam.himes92 • 0
Yes at 5%.
Comment: Resolving over clustered NGS with Q-scores by ATpoint 78k
Has phiX been spiked in to increase nucleotide diversity.
Traffic: 1333 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6