Limit : this year
all time today this week this month this year
459 results • Page 2 of 10
Sort: Views
Rank Views Votes Replies
69
votes
39
replies
4.5k
views
14 follow
Forum: Preparation for Bioinformatics.SE closing
meta biostars
updated 11 months ago by 43k • written 6.9 years ago by 13k
11
votes
13
replies
4.5k
views
6 follow
Forum: NGS Data storage solutions for small organisations or big labs
big-data HTS storage NGS metagenomics
updated 10 months ago by 43k • written 4.8 years ago by ▴ 830
18
votes
7
replies
4.4k
views
Forum: Review of the CIGAR string format
alignment
updated 10 months ago by 43k • written 5.5 years ago by 8.5k
26
votes
10
replies
4.4k
views
6 follow
Forum: Why not merging?
fastq sequencing
updated 11 months ago by 43k • written 6.8 years ago by 16k
47
votes
30
replies
4.3k
views
10 follow
Forum: Bioinformatics software distribution
software
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.7k
73
votes
14
replies
4.2k
views
12 follow
Forum: Things you wish you knew when entering the bioinformatics field
pitfalls advice
updated 10 months ago by 43k • written 3.6 years ago by ★ 16k
15
votes
6
replies
4.2k
views
Forum: Which database software is better for bioinformatics web development? MySQL or MongoDB?
database mysql mongodb software
updated 10 months ago by 43k • written 5.6 years ago by ▴ 10
10
votes
11
replies
4.2k
views
7 follow
Forum: What made you interested in Bioinformatics?
career
updated 11 months ago by 43k • written 6.4 years ago by ▴ 990
40
votes
23
replies
4.1k
views
12 follow
Forum: Why learn programming in bioinformatics?
Programming
updated 10 months ago by 43k • written 5.6 years ago by ▴ 110
36
votes
39
replies
4.1k
views
11 follow
Forum: Survey/Vote: If you could double the speed of any three commandline tools, which three would they be?
blast RNA-Seq alignment next-gen-sequencing
updated 11 months ago by 43k • written 6.4 years ago by ▴ 130
33
votes
23
replies
4.0k
views
8 follow
Forum: Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF file-format genomics
updated 10 months ago by 22k • written 10 months ago by 4.2k
56
votes
19
replies
4.0k
views
9 follow
Forum: How to apply for a job
resume cover-letter application CV
updated 11 months ago by 43k • written 6.7 years ago by 23k
15
votes
13
replies
4.0k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 3 months ago by 3.9k • written 17 months ago by ▴ 30
37
votes
16
replies
4.0k
views
9 follow
Forum: Sanger sequencing is no longer the gold standard?
Sanger NGS
updated 11 months ago by 43k • written 6.5 years ago by ▴ 220
6
votes
8
replies
3.9k
views
6 follow
Forum: Workstation : More RAM or Faster RAM
RAM Configuration workstation
updated 10 months ago by 43k • written 5.5 years ago by ▴ 20
0
votes
3
replies
3.8k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 16 months ago by ▴ 120
25
votes
7
replies
3.7k
views
6 follow
Forum: Site Use Guidelines
meta biostars Guidelines
updated 6 months ago by 43k • written 14.6 years ago by 100k
30
votes
13
replies
3.7k
views
11 follow
Forum: what is your daily must see bioinformatics web site?
learn technology
updated 10 months ago by 43k • written 9.6 years ago by 9.7k
19
votes
9
replies
3.6k
views
Forum: How to self-study (get onto) Bioinformatics and Data Analysis for Genomic, for working with real life genomics data?
R genome RNA-Seq Python
updated 10 months ago by 43k • written 5.7 years ago by ▴ 750
8
votes
9
replies
3.6k
views
8 follow
Forum: How can I contribute to the Bioinformatics community as a Software Engineer
software-engineer
updated 10 months ago by 43k • written 5.5 years ago by ★ 1.1k
0
votes
3
replies
3.6k
views
Forum: How to know that our trinity denovo assembly is good or not?
Assembly
updated 10 months ago by 43k • written 5.4 years ago by • 0
4
votes
0
replies
3.5k
views
Forum: How can unique molecular identifiers (UMIs) help to reduce quantitative biases?
NGS Variant-Calling Unique-Molecular-Identifier
updated 10 months ago by 43k • written 4.9 years ago by 11k
21
votes
12
replies
3.5k
views
Forum: How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta how-to documentation
3 months ago by Ram 43k
3
votes
8
replies
3.5k
views
6 follow
Forum: SSD or HHD for genome analysis
hardware genome sequencing
updated 10 months ago by 43k • written 4.5 years ago by ▴ 20
19
votes
6
replies
3.4k
views
Forum: ngs vs microarray
microarray ngs
updated 10 months ago by 43k • written 5.8 years ago by ▴ 20
6
votes
8
replies
3.3k
views
Forum: A hot topic in Bioinformatics 2017
paper
updated 11 months ago by 43k • written 7.0 years ago by ▴ 90
22
votes
11
replies
3.3k
views
Forum: ExpressionSet in the age of tidyverse
expressionset R bioconductor
updated 10 months ago by 43k • written 5.9 years ago by 13k
29
votes
18
replies
3.3k
views
7 follow
Forum: Should I quit PhD program?
education career research phd
updated 10 months ago by 43k • written 5.9 years ago by ▴ 30
17
votes
14
replies
3.2k
views
Forum: Asking for feedback on a Python library for computing alignments
alignment Python
updated 10 months ago by ▴ 220 • written 2.3 years ago by ▴ 60
9
votes
11
replies
3.2k
views
7 follow
Forum: Fields with biggest demand for bioinformatics?
career
updated 10 months ago by 43k • written 5.2 years ago by ▴ 200
0
votes
2
replies
3.2k
views
Forum: I’m considering a career transition from software engineering to bioinformatics. Is it a good fit for me?
career
updated 3 months ago by 141k • written 3 months ago by ▴ 10
18
votes
2
replies
3.2k
views
Forum: Scripts on the Web: Bioinformatics Recipes
bioinformatics
updated 10 months ago by 43k • written 6.1 years ago by 100k
13
votes
18
replies
3.2k
views
6 follow
Forum: Bioinformatics independent study group
Proteomic RNA-Seq Genomic
updated 11 months ago by 43k • written 6.6 years ago by ★ 1.3k
38
votes
17
replies
3.2k
views
7 follow
Forum: Why does bioinformatics use a special format like a BAM file instead of a database like SQLite?
sam bam samtools
updated 10 months ago by 43k • written 3.7 years ago by ▴ 250
9
votes
3
replies
3.2k
views
Forum: Why doesn't Swift have an active bioinformatics community project like rust-bio, Biogo and BioJulia?
Swift
updated 11 months ago by 43k • written 6.3 years ago by • 0
29
votes
10
replies
3.1k
views
Forum: How do you perform functional testing for your Bioinformatics tools?
development testing bug reliability
updated 11 months ago by 43k • written 7.1 years ago by 8.4k
2
votes
6
replies
3.0k
views
Forum: RIP CentOS, CentOS 8 to be EOL'd in 2021
centos linux-distro os
updated 10 months ago by 43k • written 3.4 years ago by 11k
7
votes
6
replies
3.0k
views
Forum: transition to bioinformatics
career wet-lab
updated 10 months ago by 43k • written 5.9 years ago by • 0
10
votes
8
replies
3.0k
views
6 follow
Forum: Cancer research for computer science student
cancer research computer-science
updated 6 months ago by • 0 • written 6.4 years ago by ▴ 70
3
votes
4
replies
3.0k
views
6 follow
Forum: Links for forums or discussion groups about machine learning, aging, genomics and artificial intelligence?
genome
updated 11 months ago by 43k • written 6.2 years ago by ▴ 50
4
votes
6
replies
3.0k
views
Forum: Looking for advice on making a grad school decision on bioinformatics/computational biology programs
computational-biology graduate-program
updated 11 months ago by 43k • written 7.1 years ago by ▴ 10
64
votes
24
replies
3.0k
views
12 follow
Forum: How much I must feel useless?
machine-learning Programming statistics
updated 10 months ago by 43k • written 5.5 years ago by ▴ 80
0
votes
1
reply
3.0k
views
Forum: Bioinformatics Master thesis
thesis
updated 10 months ago by 43k • written 5.3 years ago by ▴ 20
12
votes
12
replies
2.9k
views
Forum: Programming interview via Skype
programming-test interview
updated 10 months ago by 43k • written 5.8 years ago by ▴ 50
12
votes
2
replies
2.9k
views
Forum: List of genome annotation tools (>140)
gene genome
updated 10 months ago by 43k • written 4.7 years ago by 8.5k
34
votes
22
replies
2.9k
views
11 follow
Forum: Have we failed as bioinformatician in this time of COVID-19
Bioinformatician COVID-19
updated 10 months ago by 43k • written 3.9 years ago by ▴ 10
4
votes
6
replies
2.8k
views
Forum: NGS Data Storage Best Practices (Clinical)
NGS clinical storage
updated 10 months ago by 43k • written 4.3 years ago by ▴ 630
45
votes
19
replies
2.8k
views
9 follow
Forum: Where and how NGS techniques are heading for the next 5 years?
next-gen NGS
updated 11 months ago by 43k • written 6.8 years ago by 5.8k
8
votes
6
replies
2.8k
views
Forum: Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by 10k
3
votes
7
replies
2.8k
views
Forum: Strategies for group submisions to SRA (BioProject)
NCBI SRA next-gen Archive Core-Facility
updated 11 months ago by 43k • written 5.5 years ago by ★ 2.7k
459 results • Page 2 of 10
Recent Votes
Comment: Bioinformatics_where do i start
Comment: Can I compare kallisto counts from samples with different amount of reads?
Comment: RNAseq of primary tumor and metastases in two different organ
Comment: CombineGVCFs vs. MergeVcfs
Comment: Bioinformatics_where do i start
Answer: Bwa sampe - BGI
Comment: Where to find the homopolymer regions bed file for Hg002 genome?
Recent Locations • All
EMBL-EBI, just now
United Kingdom, just now
Belgium, Brussels, 1 minute ago
Italy, 1 minute ago
Canada, 1 minute ago
United States, 1 minute ago
United States, 2 minutes ago
Recent Awards • All
Popular Question to predeus ★ 1.9k
Scholar to ATpoint 81k
Teacher to Pierre Lindenbaum 161k
Popular Question to Damianos P. Melidis ▴ 40
Popular Question to kwanghoon ▴ 20
Scholar to b.contreras.moreira ▴ 150
Popular Question to pablo ▴ 300
Recent Replies
Comment: Bwa sampe - BGI by ATpoint 81k
Honestly, use bwa mem like everyone else and call it a day. bwa mem ref.fa X1.fq.gz X_2.fq.gz | samtools sort -o sorted.bam See the b…
Comment: Bwa sampe - BGI by lorena9132 • 0
Hello, thank you very much for your response. I was referring more to using these options: -a INT Maximum insert size for a read pair …
Comment: gene body coverage with RSeqQC by BioinfGuru ★ 1.6k
Take a look at [this post][1] ... it might give a clue. Alternatively, for my installation the qcmodule is located at: /home/bioinfguru/…
Comment: Bioinformatics_where do i start by BioinfGuru ★ 1.6k
The [biostars handbook][1] is well worth the money [1]: https://www.biostarhandbook.com/
Comment: Statistical Advice Needed for RNAseq Data Analysis by David • 0
Thank you @atpoint for your reply, but I think I didn't explain myself clearly. Initially, I compared my two datasets to their control and …
Comment: RNAseq of primary tumor and metastases in two different organ by BioinfGuru ★ 1.6k
Most advise to avoid For Loops in R (don't ask me why, unexpected results and behaviours, poor efficiency I think). I would use tidyverse f…
Comment: RNAseq of primary tumor and metastases in two different organ by BioinfGuru ★ 1.6k
P-values are not corrected for the multiple comparisons inherent in differential gene expression analysis. FDR (aka qvalue) is used for sel…
Comment: CombineGVCFs vs. MergeVcfs by Jeremy Leipzig 22k
in the supplemental materials of that UKBB paper they actually do mention MergeVcfs but it must be a typo
Comment: add INFO tag to vcf with bcftools by Javier • 0
Hi, im traying to do something similar, could you share the code to do what you describe. Thanks
Comment: Visualization of PROKKA Annotation Result? by Joe 21k
Colin's answer is essentially the right one I believe, but the more immediate consideration is: *what are you actually trying to show?* Mo…
Comment: Bioinformatics_where do i start by Pierre Lindenbaum 161k
https://www.biostars.org/p/9554614/ ; <br> https://www.biostars.org/p/98983 ; <br> https://www.biostars.org/p/9583727/ :<br> https://www.b…
Answer: Bwa sampe - BGI by Pierre Lindenbaum 161k
bwa sampe produces unsorted SAM , not BAM. converting SAM to BAM will reduce the size sorting the BAM will reduce the size (you can …
Comment: Where to find the homopolymer regions bed file for Hg002 genome? by Bikram Kumar • 0
Hi! Should I delete the stack exchange post? I didn't know that cross posting is bad. [https://meta.stackoverflow.com/a/425789/5140632][1] …
Answer: Visualization of PROKKA Annotation Result? by colindaven 6.3k
You need a genome browser and you can probably use GBK or gff3 format. Here are some suggestions - I like JBrowse best, Artemis in its …
Comment: Where to find the homopolymer regions bed file for Hg002 genome? by Pierre Lindenbaum 161k
cross-posted https://bioinformatics.stackexchange.com/questions/22401
Traffic: 3088 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6