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1,000 results • Page 3 of 20
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290
votes
55
replies
15k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 7 months ago by 40k • written 10.4 years ago by 10k
45
votes
23
replies
5.9k
views
6 follow
Forum: biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
chat slack
updated 7 months ago by 40k • written 5.5 years ago by 103k
61
votes
16
replies
7.1k
views
14 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 8 months ago by ★ 1.3k • written 3.0 years ago by 8.2k
9
votes
5
replies
1.9k
views
Forum: Should I get my MS in Bioinformatics at UCSC or GA Tech
genome
updated 6 months ago by 40k • written 2.5 years ago by ▴ 10
50
votes
20
replies
5.4k
views
18 follow
Forum: Explain bioinformatics to a 10 year old
bioinformatics
updated 6 months ago by 40k • written 7.6 years ago by ★ 1.1k
3
votes
2
replies
1.2k
views
Forum: If I want to learn bioinformatics as a computer scientist, would it help to learn Data science and Machine Learning first?
computer-scientist machine-learning
updated 6 months ago by 40k • written 2.5 years ago by • 0
3
votes
5
replies
1.1k
views
Forum: Hide Emails from Guests
meta biostars
updated 6 months ago by 40k • written 2.8 years ago by ▴ 770
0
votes
0
replies
555
views
Forum: Tools to check if the user defined pathway is enriched in the data
RNA-Seq sequencing R
updated 6 months ago by 40k • written 2.6 years ago by ▴ 60
28
votes
7
replies
1.7k
views
Forum: Do you have favorite icons for bioinformatics?
ubuntu
updated 6 months ago by 40k • written 2.6 years ago by ▴ 250
1
vote
0
replies
522
views
Forum: Determining Heteroplasmy per sample
heteroplasmy bcftools
updated 6 months ago by 40k • written 2.6 years ago by ▴ 10
4
votes
4
replies
732
views
Forum: Looking for a CS PhD Program + tips
PhD
updated 6 months ago by 40k • written 2.6 years ago by • 0
29
votes
4
replies
7.3k
views
Forum: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
software-error bowtie2 bioconda conda tbb
updated 6 months ago by 40k • written 2.6 years ago by ▴ 240
6
votes
4
replies
4.5k
views
Forum: Chip-Seq Data Analysis
chip-seq
updated 7 months ago by 40k • written 11.4 years ago by ★ 1.2k
128
votes
44
replies
30k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 6 months ago by 40k • written 7.0 years ago by ★ 1.0k
2
votes
0
replies
604
views
Forum: Need recommendations on best certificates to take to boost bioinformatics career and income.
courses
updated 6 months ago by 40k • written 2.6 years ago by ▴ 20
20
votes
4
replies
1.5k
views
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2020?
papers survey SNP
updated 7 months ago by 40k • written 2.6 years ago by ★ 1.2k
1
vote
0
replies
638
views
Forum: Help EMBL-EBI maintain its services: articulating the value of open data
embl-ebi open-data
updated 6 months ago by 40k • written 2.6 years ago by 23k
0
votes
1
reply
629
views
Forum: What is the relationship between Medical Science & Computing (MSC) and NIH?
career
updated 6 months ago by 40k • written 2.6 years ago by ★ 1.1k
13
votes
3
replies
6.3k
views
Forum: Can We Have A Collection Of Interesting Research Topics?
project phd
updated 7 months ago by 40k • written 11.3 years ago by 53k
16
votes
11
replies
1.4k
views
10 follow
Forum: Suggest common programming tasks for biologists who are novice programmers
education
updated 6 months ago by 40k • written 2.6 years ago by ▴ 40
1
vote
4
replies
800
views
Forum: Very high ratio of cases to controls - how to increase statistical power?
gwas SNP
updated 6 months ago by 40k • written 2.6 years ago by ▴ 20
1
vote
4
replies
962
views
Forum: is valid to apply several cut offs thresholds to a data-matrix used to perform coexpression analysis until reach the desire result?
RNA-Seq matrix-filtering coexpression-analysis
updated 6 months ago by 40k • written 2.6 years ago by • 0
4
votes
6
replies
916
views
Forum: What are some areas of bioinformatics that are overdone?
bioinformatics
updated 6 months ago by 40k • written 2.6 years ago by 21k
2
votes
5
replies
734
views
Forum: Unit test / integration test packages for R for bioinformatic projects?
R
updated 6 months ago by 40k • written 2.6 years ago by ★ 3.3k
6
votes
5
replies
1.3k
views
Forum: Pacific Bio Long Reads vs Illumina Short Reads
next-gen RNA-Seq alignment
updated 6 months ago by 40k • written 2.6 years ago by ▴ 70
40
votes
24
replies
2.9k
views
13 follow
Forum: What programming language do you use the most in your work? Which one do you like the best?
Programming Python R Scripting
updated 6 months ago by 40k • written 2.6 years ago by ▴ 90
1
vote
3
replies
2.0k
views
Forum: MOOC for AI and Machine learning for Bioinformatics
ML AI
updated 6 months ago by 40k • written 3.1 years ago by ★ 1.5k
0
votes
0
replies
505
views
Forum: How to deal with contamination in bulkseq samples? Looking at correlated genes?
RNA-Seq
updated 6 months ago by 40k • written 2.6 years ago by • 0
57
votes
43
replies
15k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 6 months ago by 40k • written 4.7 years ago by 10k
23
votes
7
replies
1.4k
views
6 follow
Forum: Where to start? Newbie trying to enter the world of computational biology getting lost
cytoscape RNA-Seq R
updated 6 months ago by 40k • written 2.7 years ago by ▴ 60
7
votes
4
replies
791
views
Forum: Employer Insights for Bioinformatics Job Seekers
advice career
updated 6 months ago by 40k • written 2.7 years ago by ▴ 130
7
votes
20
replies
1.6k
views
Forum: NGS RNA-Seq Analysis Pipeline Tophat vs STAR
STAR RNA-Seq TopHat
updated 4 months ago by 40k • written 2.7 years ago by ▴ 10
11
votes
9
replies
2.2k
views
7 follow
Forum: Feature Selection and Dimensionality Reduction in 10X scRNA-seq data
software-error pca scRNA-seq
updated 4 months ago by 40k • written 3.7 years ago by 77k
12
votes
4
replies
8.4k
views
Forum: Bioinformatics/Biotech Firms In India
career
updated 7 months ago by 40k • written 11.4 years ago by ▴ 100
0
votes
0
replies
622
views
Forum: where to get the site mutation rate of SARS-CoV-2?
sequence sequencing
updated 4 months ago by 40k • written 2.8 years ago by ▴ 40
13
votes
7
replies
3.4k
views
9 follow
Forum: What are the 5 biggest challenges/ opportunities in Bioinformatics going into 2021?
research challenges
updated 6 months ago by 40k • written 2.8 years ago by ▴ 50
6
votes
5
replies
1.2k
views
Forum: Very generally speaking, what are valid criteria to decide that a sample is an outlier?
outliers
updated 4 months ago by 40k • written 2.8 years ago by ▴ 290
7
votes
4
replies
1.0k
views
Forum: Specific question on torturing the data until it confesses
ipa gene-set-enrichment statistics
updated 4 months ago by 40k • written 2.8 years ago by ▴ 290
7
votes
3
replies
1.2k
views
Forum: Is it still recommended to avoid macOS Big Sur?
mac
updated 4 months ago by 40k • written 2.8 years ago by ▴ 200
25
votes
7
replies
1.7k
views
6 follow
Forum: What Are The Best Bioinformatics Course Materials [2020]
course teaching
updated 4 months ago by 40k • written 2.8 years ago by 8.4k
0
votes
2
replies
663
views
Forum: A new data analytics platform for next gen sequencing
RNA-Seq rna-seq next-gen-sequencing
updated 4 months ago by 40k • written 2.8 years ago by • 0
7
votes
1
reply
6.4k
views
Forum: What are chromatin states ?
genome ChIP-Seq
updated 4 months ago by 40k • written 4.0 years ago by ▴ 760
11
votes
11
replies
3.6k
views
8 follow
Forum: Best open source genome browser in 2020
genome-browser genomics
updated 6 months ago by 40k • written 2.9 years ago by ▴ 30
3
votes
7
replies
2.4k
views
Forum: Strategies for group submisions to SRA (BioProject)
NCBI SRA next-gen Archive Core-Facility
updated 4 months ago by 40k • written 5.0 years ago by ★ 2.6k
2
votes
6
replies
2.9k
views
Forum: RIP CentOS, CentOS 8 to be EOL'd in 2021
centos linux-distro os
updated 3 months ago by 40k • written 2.8 years ago by 11k
50
votes
4
replies
8.6k
views
Forum: How to add images to a Biostars post
how-to
7 months ago by Ram 40k
0
votes
0
replies
827
views
Forum: MAGs annotation tools
annotation genome
updated 3 months ago by 40k • written 3.7 years ago by ▴ 50
84
votes
22
replies
4.0k
views
12 follow
Forum: is fortran still used in bioinformatics?
FORTRAN R
updated 6 months ago by 40k • written 4.3 years ago by ▴ 180
0
votes
0
replies
463
views
Forum: OC: Surveilling the Visible and Hidden Mutational Landscape in the Cancer Mitochondrion
genome SNP R
updated 7 months ago by 40k • written 2.8 years ago by ▴ 10
0
votes
2
replies
1.8k
views
Forum: Invitation to submit book chapter (Bioinformatics and evolutionary biology) for spinger book (Only three chapters left)
Evolutionary-biology
updated 6 months ago by 40k • written 2.8 years ago by ▴ 30
1,000 results • Page 3 of 20
Recent Votes
Answer: tensorQTL interaction issue
Answer: Script for getting summary statistic of any genome using GTF or GFF3 ?
Comment: How do you validate and verify your pipeline's software updates?
Comment: How do you validate and verify your pipeline's software updates?
Answer: GSEA with GO and KEGG datasets
GSEA with GO and KEGG datasets
Answer: Exporting DEGs obtained from DESeq2
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Teacher to bk11 ★ 1.4k
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Popular Question to hemantcnaik • 0
Recent Replies
Answer: How Do I Convert From Bed Format To Gff Format? by alejandrogzi ▴ 30
I recently developed [bed2gff](https://github.com/alejandrogzi/bed2gff) to quickly convert .bed files to a gff3 format, a tool written in R…
Answer: tensorQTL interaction issue by Solal • 0
Writing a solution for anyone interested. The issue stems from a dosage error, some variant contains only heterozygous individuals and no h…
Answer: The Biostar Handbook. A bioinformatics e-book for beginners. by Qboy • 0
Great book! I love using it to help my mentees to learn bioinformatics better. It would be also fantastic to compile all other necessary Pr…
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
Thanks. I'll try.
Comment: How to get sample names and genotype for SNP in multi-sample VCF file by avelarbio46 ▴ 30
Hi! I'm trying to parallelize your code (to run on a bunch of files), but it is not working because of multiple processes spawning. Do you …
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by GenoMax 135k
> so I don't think the genome size is available. Perhaps not for your specific strain but plenty of other Kpn genomes are available and th…
Comment: Kimura% of calcDivergenceFromAlign output by 睿紘 • 0
For additional information, "Coverage for each repeat class and divergence (Kimura)" is also the result from calcDivergenceFromAlign.pl
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
By the way, I run Rockhopper on the untrimmed files, and the full match percentage grew to 20%-30%, and there are 1552 transcripts in the u…
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
Here are the total bases in 4 fastq files (after adapter removal): 1,027,852,411, 1,041,895,083, 1,121,786,520, 1,299,721,929. I just rem…
Comment: Understanding mother and father alleles in VCF file by c. • 0
actually they didn't tell me which relatives were from mother side and which from father side, you are right. But how can you find related …
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by GenoMax 135k
Correct. Data that went into the assembly.
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
Total bases (number of reads * read length) should be calculated after removal of adapters, right?
Comment: Getting BLAST to give output whilst running by Ken • 0
If I understand correctly, Blast can tell you how many results it has gotten but it can't tell you how many it is going to get, therefore i…
Comment: Understanding mother and father alleles in VCF file by Ram 40k
I don't understand your logic. You don't know what phasing is but are confident it is not required, and your proof is that relatives were d…
Comment: Understanding mother and father alleles in VCF file by c. • 0
It's from Nebula genomics. It must be possible to deduce parental alleles, since I converted the VCF file into a Myheritage VCF file and th…
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