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1,000 results • Page 1 of 20
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5
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4
replies
381
views
Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 18 hours ago by 39k • written 2 days ago by ★ 2.9k
2
votes
2
replies
178
views
Forum: Colleges
Colleges india universities
updated 5 days ago by 39k • written 6 days ago by • 0
19
votes
15
replies
1.3k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 13 days ago by 39k • written 5.1 years ago by 5.3k
120
votes
33
replies
36k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 28 days ago by ★ 2.3k • written 9.8 years ago by 11k
100
votes
38
replies
28k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 28 days ago by 21k • written 9.6 years ago by ★ 3.6k
26
votes
12
replies
6.9k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 4 weeks ago by ▴ 10 • written 9.6 years ago by ▴ 50
170
votes
43
replies
16k
views
25 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
updated 5 weeks ago by 11k • written 10.2 years ago by 98k
0
votes
2
replies
322
views
Forum: How to start in bioinformatics?
career
updated 26 days ago by 39k • written 7 weeks ago by • 0
3
votes
4
replies
590
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
7 weeks ago by cwaingartentrabajo • 0
12
votes
5
replies
743
views
6 follow
Forum: Bioinformatics opportunities in Europe?
career
updated 7 weeks ago by ▴ 20 • written 7 weeks ago by • 0
18
votes
14
replies
1.1k
views
7 follow
Forum: What's the general view on point & click bioinformatics for routine analyses?
ngs RNA-Seq next-gen-sequencing
6 weeks ago by Simon ▴ 40
0
votes
0
replies
3.4k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
8 weeks ago by Alexandre Eeckhoutte • 0
11
votes
11
replies
866
views
7 follow
Forum: Any tips in landing a bioinformatic job?
Spain R
updated 9 weeks ago by ★ 2.9k • written 9 weeks ago by ▴ 30
4
votes
2
replies
289
views
Forum: advice on course selection for a bioinformatics career.
career
updated 10 weeks ago by 98k • written 10 weeks ago by • 0
0
votes
1
reply
237
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 12 weeks ago by 129k • written 12 weeks ago by • 0
3
votes
1
reply
308
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 12 weeks ago by 129k • written 12 weeks ago by 4.8k
5
votes
3
replies
453
views
Forum: Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 3 months ago by 21k • written 3 months ago by ▴ 60
18
votes
10
replies
1.1k
views
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
3 months ago by bompipi95 ▴ 120
1
vote
0
replies
196
views
Forum: Penetrance versus heritability
penetrance heritability
3 months ago by tacrolimus ▴ 110
10
votes
15
replies
1.0k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 4 days ago by 21k • written 3 months ago by ★ 1.5k
8
votes
4
replies
475
views
Forum: Implementing FAIR data principles to a bioinformatics lab
data
updated 3 months ago by 21k • written 3 months ago by ★ 1.5k
0
votes
0
replies
219
views
Forum: NGSrich - hg38
Coverage NGSrich
3 months ago by RK • 0
5
votes
5
replies
690
views
Forum: Bioinformatics - how to start?
molecular-biology
updated 3 months ago by ★ 23k • written 3 months ago by • 0
8
votes
8
replies
1.2k
views
7 follow
Forum: A Computer Scientist who wants to start Bioinformatics
computer-science books resources ngs
updated 4 months ago by ▴ 10 • written 5 months ago by • 0
7
votes
3
replies
656
views
Forum: Find a research paper for reproducing the results
research paper
updated 4 months ago by 129k • written 4 months ago by ★ 2.5k
1
vote
1
reply
415
views
Forum: Gene ontology vs Gene set enrichment
set enrichment GSEA ontology Gene analysis gene
updated 5 months ago by ★ 3.1k • written 5 months ago by • 0
6
votes
12
replies
1.1k
views
Forum: How to decide when to have local hardware vs cloud computing?
hardware computational-resources cloud
5 months ago by Lluís R. ★ 1.2k
15
votes
11
replies
1.9k
views
7 follow
Forum: BioStars and ChatGPT
ChatGPT Meta GPT
updated 7 weeks ago by ▴ 590 • written 6 months ago by ▴ 320
18
votes
10
replies
1.4k
views
7 follow
Forum: Add artificial intelligence training related disclaimers to your profile
licensing AI
updated 6 months ago by 52k • written 6 months ago by 98k
0
votes
2
replies
2.9k
views
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
6 months ago by SushiRoll ▴ 100
7
votes
2
replies
466
views
Forum: Improvement of Wikipedia articles with bioinformatic subjects
Wikipedia Bioinformatics
4 months ago by Matthias Zepper 3.7k
5
votes
4
replies
686
views
Forum: Best BAM viewer in 2022
bam sam tool-recommendation
6 months ago by Cornelius ▴ 60
1.2k
votes
206
replies
50k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 5 days ago by ★ 1.2k • written 12.2 years ago by 21k
8
votes
4
replies
734
views
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
6 months ago by dlaehnemann ▴ 10
10
votes
13
replies
1.8k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 6 months ago by 6.0k • written 6 months ago by ▴ 10
0
votes
2
replies
611
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 5 months ago by 39k • written 8 months ago by • 0
4
votes
5
replies
698
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
career masters
updated 17 days ago by 39k • written 7 months ago by • 0
1
vote
1
reply
512
views
Forum: Package is not available (for R version XXX)？ Manually download and install R packages
installation package R
updated 5 months ago by 4.8k • written 7 months ago by ▴ 30
3
votes
6
replies
651
views
Forum: How to become a moderator and other ways of contributing to Biostars
meta biostars
updated 17 days ago by 39k • written 8 months ago by 6.0k
2
votes
3
replies
564
views
Forum: Experiences with different cloud computing resources / providers
cloud pipeline rna-seq alignment
updated 8 months ago by 21k • written 8 months ago by ▴ 10
19
votes
13
replies
1.6k
views
8 follow
Forum: Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 8 months ago by 6.1k • written 8 months ago by ▴ 40
8
votes
13
replies
1.6k
views
8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 9 months ago by • 0 • written 9 months ago by ★ 1.2k
4
votes
4
replies
910
views
Forum: Bioinformatics analogies
Bioinformatics
updated 9 months ago by 98k • written 9 months ago by ▴ 40
2
votes
4
replies
753
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 10 weeks ago by 39k • written 9 months ago by ▴ 210
2
votes
4
replies
567
views
Forum: strand specific data
strand DNA RNA specific coding
9 months ago by upasana • 0
3
votes
0
replies
431
views
Forum: Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology RTK IC50 TKI database
9 months ago by Vincent Laufer ★ 2.9k
7
votes
14
replies
1.7k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 9 months ago by 2.6k • written 9 months ago by ▴ 80
4
votes
4
replies
1.0k
views
Forum: Cloud Computing Services available?
resources Cloud-Computing
updated 5 months ago by 39k • written 11 months ago by ★ 2.3k
2
votes
7
replies
913
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 10 months ago by 39k • written 10 months ago by ▴ 20
6
votes
3
replies
1.2k
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 10 months ago by 3.7k • written 10 months ago by 17k
1,000 results • Page 1 of 20
Recent Votes
Comment: Italicise annotations with pheatmap
Visualizing Graph Alignment Format via minigraph
Gene prediction software
ClusterProfiler : What is GeneRatio and BgRatio?
ClusterProfiler : What is GeneRatio and BgRatio?
A: ClusterProfiler : What is GeneRatio and BgRatio?
A: ClusterProfiler : What is GeneRatio and BgRatio?
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Popular Question to v.berriosfarias ▴ 90
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Recent Replies
Comment: Stratified sample assignment for analysis by ATpoint 72k
Batches for what? Processing/sequencing, what data are we talking about? If this is indeed paired then you basically must keep samples of a…
Answer: Visualizing Graph Alignment Format via minigraph by colindaven 4.8k
That's a really good question. Short version: not much to my knowledge, aside from looking at it, or filtering it (as it's a PAF like forma…
Comment: Alignment of case vs. control from different origin by i.sudbery 17k
BTW - Most TCGA cancer types do have normals amoungst the samples.
Comment: Alignment of case vs. control from different origin by i.sudbery 17k
The assumption of these studies is that any batch effect within a batch affects both treatment and control equally, so that when you divide…
Answer: Stratified sample assignment for analysis by Vincent Laufer ★ 2.9k
First, you didn't tell us what kind of data you are working with. For arguments sake, I'll assume bulk RNA-seq. Generally, your options …
Comment: VEP tab/vcf - Different output by Ben_Ensembl ★ 2.2k
You can use the ---show_ref_allele flag when running the VEP query. This will add the reference allele in the output and is mainly useful f…
Comment: Get relationships and hierarchies for GO terms by Alexander ▴ 70
For R-users might be interesting to look at notebook "CAFA5: train set GO terms" https://www.kaggle.com/code/antoninadolgorukova/cafa5-trai…
Comment: Getting Pairwise Sequence Alignment Score With Biopython by Alexander ▴ 70
Thanks for sharing ! Just these days I am trying to wrap my mind on protein alignments. I wonder: 1) "PID" in your post is "percentage o…
Answer: What kind of statistical test does Cellranger count use? by fracarb8 ▴ 950
You should read the [cellranger documentation][1] to understand how the analysis are performed. For example, it uses `graphclust` for clust…
Answer: Gene prediction software by alexandru.bologa.marian ▴ 40
Hi, I don't know if there are tools designed to predict pseudogenes, but If i understand correctly from your post you could predict all th…
Answer: Getting Pairwise Sequence Alignment Score With Biopython by Jonathan Lefebre ▴ 60
Maybe quite late, but in case other people are looking for this. Pairwise sequence identity can be easily calculated using basic python fun…
Comment: Getting same value for start and end position, "DNA methylation" by ATpoint 72k
Yes, that is what methylkit is for. See my answer.
Comment: Italicise annotations with pheatmap by ATpoint 72k
Inkscape you learn in a day, for basic image and figure manipulation it's really simple and a good skill to have. Highly recommended.
Comment: Installation of PPFinder by subashini.fbtpb106 ▴ 10
Can you suggest me any software that does gene prediction by masking pseudogenes?
Comment: variant allelic fraction by Pierre Lindenbaum 154k
IMHO this is like asking for the cow when you only have a steak :-)
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