Limit : this year
all time today this week this month this year
459 results • Page 1 of 10
Sort: Rank
Rank Views Votes Replies
4
votes
2
replies
230
views
Forum: Bioinformatics: Where do I start
Sequencing
updated 2 days ago by 43k • written 2 days ago by ▴ 10
7
votes
7
replies
815
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 3 days ago by ★ 2.5k • written 4 days ago by • 0
1
vote
2
replies
320
views
Forum: VCF bulk handling
bcftools SnpEff WGS VEP VCF
1 day ago by Javier • 0
16
votes
10
replies
1.0k
views
6 follow
Forum: F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 20 days ago by 5.3k • written 21 days ago by ★ 2.4k
1
vote
1
reply
206
views
Forum: Can I use this community for software development?
software-development
updated 24 days ago by 43k • written 24 days ago by • 0
5
votes
2
replies
368
views
Forum: Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 24 days ago by 54k • written 24 days ago by • 0
0
votes
0
replies
165
views
Forum: Field of Study in Computational Biology
Genomics Computational-Biology PhD
updated 4 weeks ago by 43k • written 4 weeks ago by • 0
1
vote
3
replies
461
views
Forum: Development plan for a bioinformatics database developer/coder
developer
4 weeks ago by pixie@bioinfo ★ 1.5k
7
votes
8
replies
635
views
Forum: Bioinformatics career transition
career forum
updated 5 weeks ago by ★ 16k • written 5 weeks ago by ▴ 20
4
votes
2
replies
464
views
Forum: Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein CAFA5
5 weeks ago by Anatoly A. ▴ 10
6
votes
6
replies
748
views
Forum: You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical thought-experiment
6 weeks ago by jared.andrews07 ★ 16k
0
votes
0
replies
155
views
Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 1.2k
0
votes
2
replies
348
views
Forum: What's the state of the art in bacterial whole genome alignment?
whole genome alignment mauve
6 weeks ago by Dave Carlson ★ 1.7k
31
votes
12
replies
908
views
7 follow
Forum: Nextflow and self-made pipelines opinion
nextflow pipeline data-analysis
7 weeks ago by karlaarz ▴ 90
5
votes
4
replies
523
views
Forum: Would reaching out to local labs and startups help with my career transition?
career volunteering
updated 7 weeks ago by 141k • written 8 weeks ago by ▴ 10
1
vote
2
replies
350
views
Forum: Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
Maternity Career-Gap career-reentry
updated 8 weeks ago by 81k • written 8 weeks ago by ▴ 20
8
votes
7
replies
762
views
6 follow
Forum: Tower Server configuration for NGS data analysis
NGS
updated 8 weeks ago by ▴ 120 • written 11 weeks ago by • 0
1
vote
0
replies
264
views
Forum: list of bioinformatics tools in cancer genomics
mutations CNA cancer genomics LOH
updated 8 weeks ago by 161k • written 8 weeks ago by ★ 1.4k
4
votes
2
replies
358
views
Forum: bulk seq vs. sc-seq
scATAC-seq ATAC-seq scRNAseq RNAseq
updated 10 weeks ago by ★ 5.8k • written 10 weeks ago by ▴ 10
8
votes
6
replies
2.8k
views
Forum: Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by 10k
0
votes
0
replies
187
views
Forum: tutorial for carrier screening analyses?
carrier-screening
updated 11 weeks ago by 43k • written 11 weeks ago by ▴ 20
2
votes
3
replies
418
views
Forum: My Project
Project CLI MD-Simulations Molecular-docking
11 weeks ago by Ajay A Shettigar • 0
17
votes
11
replies
962
views
Forum: How to overcome the imposter syndrome in bioinformatics?
advice
12 weeks ago by sil_bioinfo ▴ 40
10
votes
7
replies
2.2k
views
Forum: How to learn bioinformatics?
learning
updated 3 months ago by ★ 1.3k • written 23 months ago by ▴ 20
26
votes
27
replies
2.0k
views
10 follow
Forum: Determining computer time required
computer hpc time
updated 3 months ago by ★ 5.8k • written 3 months ago by ▴ 40
7
votes
6
replies
717
views
Forum: where to work as a bioinformatician (NGS/IA)
employment omics ia ngs
updated 3 months ago by 43k • written 3 months ago by ▴ 20
21
votes
12
replies
3.5k
views
Forum: How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta how-to documentation
3 months ago by Ram 43k
2
votes
1
reply
403
views
Forum: Cataloguing available spatial transcriptomics tools, then linking them together into a workflow?
cytassist transcriptomics nanostring xenium visium
3 months ago by LauferVA 4.2k
49
votes
20
replies
2.0k
views
10 follow
Forum: First experiences matter
first-time tolerance
updated 3 months ago by ★ 2.6k • written 3 months ago by ★ 27k
4
votes
3
replies
739
views
Forum: How to get started in bioinformatics
students
updated 3 months ago by 43k • written 3 months ago by ▴ 10
2
votes
2
replies
566
views
Forum: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat single-cell omics batch rnaseq
updated 3 months ago by 43k • written 3 months ago by ▴ 40
0
votes
2
replies
3.2k
views
Forum: I’m considering a career transition from software engineering to bioinformatics. Is it a good fit for me?
career
updated 3 months ago by 141k • written 3 months ago by ▴ 10
5
votes
3
replies
582
views
Forum: Binning the rare biosphere
metagenomics soil assembly techniques binning
updated 4 months ago by ★ 27k • written 4 months ago by ▴ 20
6
votes
2
replies
641
views
Forum: how to start Bioinformatics?
basics
updated 4 months ago by ★ 27k • written 4 months ago by • 0
19
votes
5
replies
1.1k
views
6 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics snps survey papers
4 months ago by Raony Guimarães ★ 1.4k
4
votes
6
replies
909
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 4 months ago by 43k • written 4 months ago by • 0
1
vote
1
reply
478
views
Forum: want to work in open source project/project in bioinformatics
project
updated 4 months ago by 43k • written 4 months ago by • 0
3
votes
5
replies
999
views
Forum: Current Trends in Bioinformatics
structural-bioinformatics
updated 4 months ago by 43k • written 5 months ago by • 0
21
votes
11
replies
2.5k
views
6 follow
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
updated 4 months ago by 22k • written 13 months ago by ▴ 150
176
votes
46
replies
19k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
5 months ago by Istvan Albert 100k
3
votes
2
replies
611
views
Forum: RNA-Seq data analysis - question
Python RNA-Seq R
updated 5 months ago by ▴ 10 • written 5 months ago by ▴ 40
0
votes
0
replies
362
views
Forum: How to learn bioinformatics online?
self-education education learning
updated 5 months ago by 43k • written 5 months ago by • 0
6
votes
5
replies
2.3k
views
Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
5 months ago by tshtatland ▴ 190
7
votes
9
replies
1.4k
views
6 follow
Forum: Mentor for a beginner bioinformatics student
project mentor
5 months ago by UT_FAN ▴ 40
0
votes
0
replies
436
views
Forum: Steps after doublet detection in single cell data
scRNA doublet
6 months ago by ishwarvh • 0
0
votes
0
replies
345
views
Forum: Automated Checks And QA
retrospective
6 months ago by Sasha ▴ 830
7
votes
13
replies
1.3k
views
Forum: How do you validate and verify your pipeline's software updates?
Validation Verification Quality-Assurance
updated 6 months ago by 43k • written 6 months ago by ▴ 10
21
votes
7
replies
11k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 6 months ago by ▴ 100 • written 8.0 years ago by 11k
3
votes
3
replies
888
views
Forum: Importance of Data Structures for Bioinformatics?
data-structures
updated 7 months ago by 43k • written 7 months ago by • 0
19
votes
14
replies
2.0k
views
Forum: What is the amount of sequencing data produced annually?
data research sequencing
updated 7 months ago by 22k • written 7 months ago by ▴ 70
459 results • Page 1 of 10
Recent Votes
C: samtools sort bam file
A: samtools sort bam file
Answer: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Answer: Downloaded pdb's on rcsb.org
Recent Locations • All
Palau, just now
India, 1 minute ago
Russia, 8 minutes ago
United States, 9 minutes ago
United States, 10 minutes ago
Turkey, 14 minutes ago
Moscow, 16 minutes ago
Recent Awards • All
Scholar to swbarnes2 14k
Commentator to GenoMax 141k
Centurion to jkbonfield ★ 1.2k
Popular Question to yueli7 ▴ 250
Popular Question to Randy H ▴ 110
Popular Question to ManuelDB ▴ 80
Popular Question to lefthandgergo ▴ 10
Recent Replies
Comment: Removing duplicates by joe ▴ 500
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis by swbarnes2 14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Answer: Adding CB tag to bam file by swbarnes2 14k
Shouldn't you use PicardTools for this?
Comment: Downloaded pdb's on rcsb.org by Ram 43k
Sure. Or, one could do: bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you so much
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
This may be the best option. Get the PDB ID's $ ./get.sh "Mus musculus" AHR 4M4X 5NJ8 5V0L 8H77 Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org by Ram 43k
It gives you the first 25 results though. I'll see if I can change that. EDIT: I've updated that number to 250. I'm hoping you won't need …
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you very much
Answer: Downloaded pdb's on rcsb.org by Ram 43k
I'm going to build off of OP's query and give them a simple script: ```bash organism=$(echo $1 | sed 's/ /%20/g') gene=$2 curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool by GenoMax 141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads? Genome (can be download…
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org by Ram 43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like: https://www.rcsb.org/search?requ…
Comment: Downloaded pdb's on rcsb.org by Ram 43k
PDB has a search API: https://search.rcsb.org/#search-example-1 Here's the JSON from your search query: ``` { "query": { "type": "grou…
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
Thank you very much. Actually I looked at there, but actually I want to find something like according to search url like this [QUERY: Gene …
Traffic: 1990 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6