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1,000 results • Page 2 of 20
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440
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Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
10 months ago by goddy93 • 0
3
votes
1
reply
451
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 10 months ago by 39k • written 10 months ago by • 0
5
votes
2
replies
784
views
Forum: Skills for industry career in bioinformatics
industry
updated 10 months ago by 12k • written 10 months ago by ▴ 10
9
votes
6
replies
839
views
Forum: Programming languages in industry
programming language
updated 10 months ago by 9.6k • written 10 months ago by ▴ 30
2
votes
6
replies
846
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
11 months ago by Antonio R. Franco ★ 5.1k
1
vote
0
replies
440
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
11 months ago by Francesco ▴ 20
3
votes
2
replies
573
views
Forum: From protein-protein interaction networks to..
limitations tools knowledge computational workflow
11 months ago by BioInfoBeginner ▴ 50
0
votes
0
replies
458
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf bcftools genotypes
updated 5 months ago by 39k • written 11 months ago by ▴ 30
24
votes
6
replies
4.4k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 6 months ago by 39k • written 4.8 years ago by ★ 9.3k
7
votes
8
replies
1.1k
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 6 months ago by 39k • written 12 months ago by 2.7k
0
votes
0
replies
420
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 5 months ago by 39k • written 12 months ago by ★ 1.5k
1
vote
3
replies
1.4k
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 12 months ago by 3.6k • written 12 months ago by • 0
3
votes
3
replies
594
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 12 months ago by 26k • written 12 months ago by ★ 2.9k
0
votes
0
replies
163
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 5 months ago by 39k • written 12 months ago by ▴ 10
0
votes
2
replies
736
views
Forum: Bioinformatics algorithm tutorials in C++/C
protein gene genome
updated 12 months ago by 52k • written 12 months ago by ▴ 970
34
votes
11
replies
8.2k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 9 months ago by 39k • written 7.6 years ago by ★ 9.3k
6
votes
8
replies
1.7k
views
Forum: PC build for Nanopore data analysis
python PC pipeline nanopore-sequencing
12 months ago by stan.aanhane ▴ 30
7
votes
6
replies
1.0k
views
Forum: How to learn bioinformatics?
learning
updated 5 months ago by 39k • written 12 months ago by ▴ 10
2
votes
3
replies
546
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 5 months ago by 39k • written 12 months ago by ▴ 30
2
votes
2
replies
686
views
Forum: Project ideas
project-ideas
updated 12 months ago by 52k • written 12 months ago by • 0
0
votes
0
replies
366
views
Forum: Beagle5 imputation accuracy
beagle5 DR2 imputation impute2 impute-info
12 months ago by ch333 • 0
1
vote
6
replies
708
views
Forum: Bioinformatics Software Developer job interview steps and what to expect?
interview software-development
updated 11 months ago by 39k • written 13 months ago by • 0
2
votes
2
replies
524
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS GWAS WGS
updated 5 months ago by 39k • written 13 months ago by • 0
5
votes
5
replies
741
views
Forum: Best book introducing R programming?
coding R
13 months ago by Scottie ▴ 10
4
votes
6
replies
860
views
Forum: How relevant are read numbers in FastQ headers for paired reads?
header fastq number read
13 months ago by Matthias Zepper 3.7k
0
votes
0
replies
447
views
Forum: commonly-used bioinformatics pipeline
Galaxy
updated 5 months ago by 39k • written 13 months ago by ▴ 120
0
votes
0
replies
364
views
Forum: Master's topic in Bioinformatics
Bio-informatique
13 months ago by Badji Oumar • 0
13
votes
15
replies
2.7k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
meta biostars
updated 3 months ago by 39k • written 7.9 years ago by 98k
0
votes
1
reply
447
views
Forum: Retrieve SCCM data for client software distribution serviceNow
training servicenow online
13 months ago by hkrtrainings408 • 0
47
votes
24
replies
5.2k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 5 months ago by 39k • written 5.6 years ago by 52k
5
votes
8
replies
1.7k
views
Forum: SQL-why do we need it in Bioinformatics ?
SQL Programming
updated 5 months ago by 39k • written 13 months ago by ▴ 10
6
votes
7
replies
748
views
Forum: Generic avatars, not gravatars?
technical avatar
14 months ago by Michael 52k
4
votes
0
replies
1.7k
views
Forum: Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat scrnaseq
14 months ago by rohitsatyam102 ▴ 690
0
votes
0
replies
368
views
Forum: Phylogenomics in the presence of gene flow
hybridisation introgression gene-flow Phylogenomics
14 months ago by jeronimocid93 • 0
2
votes
2
replies
705
views
Forum: Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs bioinformatician
updated 11 months ago by 39k • written 14 months ago by ▴ 20
15
votes
11
replies
3.7k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 11 days ago by 39k • written 14 months ago by ★ 1.8k
0
votes
0
replies
321
views
Forum: CIRCexplorer2 - Getting Count Matrix
CIRCexplorer2 counts circRNA
14 months ago by akamonto • 0
2
votes
5
replies
661
views
Forum: 1000 genomes data?
DNA 1000genomes variation
updated 14 months ago by 39k • written 14 months ago by ▴ 520
0
votes
0
replies
359
views
Forum: What kind of analysis automation or pipeline is most needed in genomic data analysis right now?
dna genome analysis programming statistics
updated 14 months ago by 72k • written 14 months ago by • 0
29
votes
10
replies
5.3k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 11 weeks ago by 39k • written 5.2 years ago by 21k
3
votes
6
replies
1.8k
views
Forum: A Css For Small Screen Devices?
meta
updated 3 months ago by 39k • written 11.1 years ago by ★ 3.6k
12
votes
6
replies
1.3k
views
Forum: M.S. Bioinformatics and Computational Biology: Will I be able to find a job after graduation? I'm worried...
career Masters Graduation
updated 11 months ago by 39k • written 15 months ago by ▴ 20
0
votes
3
replies
590
views
Forum: Project Topics on bioinformatic
Data-analysis Coding Molecular-biology
updated 11 days ago by 39k • written 15 months ago by • 0
0
votes
4
replies
762
views
Forum: Declining multithreading Diamond performance on decent dual AMD Epyc 7643 server
diamond performance EPYC 7643 multithreading AMD poor
updated 15 months ago by 129k • written 15 months ago by ▴ 10
2
votes
0
replies
497
views
Forum: How to download multiple .gz files from Ensembl Protists database
wget protist ensembl
15 months ago by rohitsatyam102 ▴ 690
3
votes
4
replies
1.6k
views
Forum: Bioinformatics Research Topics/Areas that Everyone should take a look / Current Trends
research-area postgraduates
updated 3 months ago by 39k • written 15 months ago by ▴ 10
1
vote
0
replies
379
views
Forum: Continue exploring Bioinformatics and improving Bioinformatics Skills
postgraduate bioinformatics-skills
updated 3 months ago by 39k • written 15 months ago by ▴ 10
0
votes
1
reply
560
views
Forum: ensemble VEP server is down
VEP ensemble
updated 15 months ago by 72k • written 15 months ago by • 0
15
votes
10
replies
1.4k
views
7 follow
Forum: Tips and tricks to improve data visualization in bioinformatics
visualization ggplot2 plot
updated 15 months ago by ★ 23k • written 15 months ago by ★ 2.5k
3
votes
8
replies
1.1k
views
Forum: What are the pain points of using Genomics on the cloud today?
datasharing pipelines workspaces cloud genomics
updated 16 months ago by 21k • written 16 months ago by ▴ 520
1,000 results • Page 2 of 20
Recent Votes
Answer: How do you add an ORF that overlaps the two regions where a circular genome is c
C: PLINK logistic regression analysis and covariates
Comment: Regular Expression for conversion
Answer: RNAseq Data and Pipeline
Comment: Salmon Index
Comment: Salmon Index
Resequencing data of pangenome
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Recent Replies
Comment: Unusual FASTQ file by Ram 39k
People from the middle east/indian subcontinent often associate the term "post title" with their job title, because a) post translates more…
Comment: How to make a dotplot for bulk RNA average expression ? by bhumm ▴ 40
I am not entirely clear on what you are trying to accomplish, but based on @Trivas answer, I would first transform the data relative to ave…
Answer: What is the best way to clean bulk RNA-seq data? by swbarnes2 13k
There really is no "best". Just find something reasonable, and document what you chose.
Comment: How to deal with duplicated gene IDs in TCGA RNA expression data? by Vincent Laufer ★ 2.8k
ok interesting. Do all, most, some, or a few of the genes have repeated lines. Is there a handy link to the exact file you are looking at?
Answer: Make a BedGraph file by bhumm ▴ 40
Bedtools window piped into genomecov? https://bedtools.readthedocs.io/en/latest/content/tools/window.html https://bedtools.readthedocs.io…
Answer: RNAseq Data and Pipeline by ATpoint 72k
STAR counts are the raw counts, that is appropriate for DESeq2.
Comment: RNAseq Data and Pipeline by swbarnes2 13k
STAR has a GeneCounts output that looks as you describe; three columns, depending on whether one thinks the prep is unstranded, or stranded…
Comment: RNAseq Data and Pipeline by Ram 39k
There is at least one more step that you haven't shared, isn't there? This line alone does not get you the data. You don't need to give us …
Comment: RNAseq Data and Pipeline by turcoa1 • 0
my entire code is not done. All I am trying to understand is if the STAR - counts downloaded from this query have raw reads. There are head…
Comment: RNAseq Data and Pipeline by Ram 39k
Please provide your entire code so those of us wishing to do a quick test can download and check for ourselves. Also, please use the format…
Comment: RNAseq Data and Pipeline by turcoa1 • 0
```r query <- GDCquery( project = "TCGA-THCA", data.category = "Transcriptome Profiling", data.type = "Gene Expression Quantificatio…
Comment: NCBI Common Taxonomy Tree by GenoMax 129k
It may be best to email NCBI help desk with these questions. Post their response here once you hear back from them.
Comment: RNAseq Data and Pipeline by Ram 39k
What data are you downloading? Can you show us your GDCquery commands please?
Comment: Salmon Index by ashleymb1116 • 0
I am working on cow, Bos Taurus. The Arabidopsis code was an example code that was on Salmon's github and an example for indexing they gave…
Comment: Salmon Index by GenoMax 129k
> I am using the Bos Taurus files Which organism are you actually working on? You have mentioned three so far, arabidopsis, human and now …
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