Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this month
all time
today
this week
this month
this year
8 results • Page
1 of 1
Sort: replies
Rank
Views
Votes
Replies
175
votes
46
replies
18k
views
26 follow
Forum:
Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
10 days ago by
Istvan Albert
99k
100
votes
38
replies
29k
views
34 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 7 days ago by
Jeremy Leipzig
22k • written 10.0 years ago by
14134125465346445
★ 3.6k
21
votes
11
replies
2.0k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 8 days ago by
Jeremy Leipzig
22k • written 8 months ago by
bompipi95
▴ 140
1
vote
4
replies
593
views
Forum:
Current Trends in Bioinformatics
structural-bioinformatics
updated 5 days ago by
ATpoint
78k • written 22 days ago by
Paulo
• 0
17
votes
3
replies
2.6k
views
Forum:
How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta
how-to
documentation
9 days ago by
Ram
41k
3
votes
2
replies
368
views
Forum:
RNA-Seq data analysis - question
Python
RNA-Seq
R
updated 22 days ago by
fturner
▴ 10 • written 22 days ago by
sil_bioinfo
▴ 30
1
vote
1
reply
254
views
Forum:
want to work in open source project/project in bioinformatics
bioinformatics
project
updated 4 days ago by
Matthias Zepper
4.2k • written 4 days ago by
Afeef
• 0
0
votes
0
replies
178
views
Forum:
How to learn bioinformatics online?
self-education
education
learning
updated 28 days ago by
Ram
41k • written 28 days ago by
Brian Rey | BioLearn
• 0
8 results • Page
1 of 1
Recent Votes
Comment: Merging several vcf files for GWAS?
Comment: p-value combination methods
Comment: bwa mem hangs after a few thousand reads
Comment: bwa mem hangs after a few thousand reads
How to make a survival plot for a gene between High expression and low expression samples?
Comment: bwa mem hangs after a few thousand reads
bwa mem hangs after a few thousand reads
Recent Locations •
All
United States,
just now
United States,
just now
Oviedo,
1 minute ago
United States,
1 minute ago
United States,
2 minutes ago
United States,
4 minutes ago
United States,
4 minutes ago
Recent Awards •
All
Popular Question
to
newbee
▴ 40
Popular Question
to
jrleary
▴ 200
Teacher
to
Brian Bushnell
19k
Popular Question
to
Info.shi
▴ 30
Supporter
to
el24
▴ 40
Commentator
to
JACKY
▴ 120
Appreciated
to
Jon Binkley
▴ 160
Recent Replies
Comment: Salmon (or other pseudo-mappers) for multi-species RNAseq read filtering
by
ian.will
▴ 10
Yep gave that a go and proceeding with the analysis. Thanks again.
Comment: CHIPSEQ : Cut AND Run , DiffBind Parameters
by
DINESHR
• 0
Regarding Diffbind, How does diffbind calculate common peaks with the samples. I'm observing that certain peaks identified as common using …
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp
by
rpolicastro
12k
Assuming Cell Ranger was ran correctly it's unlikely that the sample is useable. It looks like most droplets were probably empty.
Comment: bwa mem hangs after a few thousand reads
by
cee28
▴ 30
Here is the output with the "-v 4" flag (not showing all the @SQ comments) : > @SQ SN:chrUn_GL000214v1 LN:137718 @SQ SN:chrUn_KI270742v1 L…
Answer: Where is the index command?
by
Michael
53k
There is a ready-made package for samtools, simply do apt install samtools Also, your screenshot shows you are using the root account…
Comment: bwa mem hangs after a few thousand reads
by
tshtatland
▴ 180
Use option `-v` with value of 4 or above to help diagnose the issue: `-v INT` Control the verbose level of the output. This option has not…
Comment: bwa mem hangs after a few thousand reads
by
tshtatland
▴ 180
Cross-posted here: [sequence alignment - bwa mem hangs after a few thousand reads - Bioinformatics Stack Exchange](https://bioinformatics.s…
Comment: Best practices for differential expression analysis with low-yield Nanopore/ONT
by
tw_140
• 0
Thank you, I really appreciate your insight! I will look into the dropouts I have.
Comment: Generate Read counts from bam file
by
NextGenSeek
• 0
Are you analysing RNA or DNA heteroplasmy levels?
Comment: What type of cancer did they study in this paper?
by
GenoMax
136k
Perhaps the exact cancer type is not what is important. Looks like they are [**all solid tumors**][1] with a baseline sample and one after …
Comment: p-value combination methods
by
i.sudbery
18k
edgeR *is* an NB-GLM. The input to NB-GLMs, including edgeR and DESeq is read counts from each sample.
Answer: What type of cancer did they study in this paper?
by
jared.andrews07
★ 16k
Cutaneous or ocular melanoma. It's from [this paper](https://aacrjournals.org/cancerimmunolres/article/10/2/162/678013/NKG7-Is-a-T-cell-Int…
Comment: p-value combination methods
by
sehriban.buyukkilic
• 0
its output of edgeR. I'm asking for input of NB-GLM? what should be input of it?
Comment: How do I download a list of genes involved in cellular metabolism (in humans) ba
by
el24
▴ 40
Hi @pratik, Thanks for the helpful solution above. I'm working on a similar task in Mouse species and noticed the CTD database is human-spe…
Comment: Match variants for allele frequency, LD score, and other features
by
Jautis
▴ 520
Trying to bump this
Traffic: 1942 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6