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190
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104 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software Forum
updated 10 weeks ago by ▴ 830 • written 10.3 years ago by 20k
201
votes
55
replies
35k
views
30 follow
Forum: Will Python Take The Place Of R?
r python biopython statistics Forum
updated 3.7 years ago by ★ 11k • written 8.2 years ago by 8.9k
120
votes
45
replies
35k
views
19 follow
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
ChIP-Seq visualization deeptools ngsplot homer Forum
updated 19 months ago by ▴ 230 • written 5.4 years ago by ★ 3.1k
276
votes
26
replies
35k
views
31 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing Forum papers Tutorial
3.6 years ago by CandiceChuDVM ★ 2.2k
20
votes
12
replies
32k
views
7 follow
Forum: When To Use Sed Awk Over Perl Or Python
awk perl python Forum
updated 21 days ago by ▴ 110 • written 7.6 years ago by 8.9k
114
votes
31
replies
32k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 4 weeks ago by 34k • written 7.9 years ago by 11k
41
votes
17
replies
31k
views
15 follow
Forum: List Of Genome Sequencing Centers/Institutes
genomics bioinformatics Forum institutes
updated 2.1 years ago by 75k • written 8.4 years ago by 19k
21
votes
3
replies
29k
views
Forum: Did You Know That Researchgate Is Spamming Your Colleagues (Perhaps Without Your Explicit Consent)?
Forum
updated 8.5 years ago by 88k • written 8.5 years ago by 19k
44
votes
12
replies
26k
views
6 follow
Forum: BWA vs Bowtie 2 (Poll)
BWA Bowtie 2 Poll Forum
updated 6.4 years ago by 88k • written 6.4 years ago by ▴ 260
95
votes
34
replies
23k
views
18 follow
Forum: Snakemake vs. Nextflow: strengths and weaknesses
snakemake nextflow Forum
updated 23 months ago by ★ 8.7k • written 4.1 years ago by ▴ 710
10
votes
2
replies
23k
views
Forum: BWA command guide
BWA Page
updated 12 months ago by ▴ 50 • written 3.4 years ago by ★ 1.0k
55
votes
19
replies
23k
views
6 follow
Forum: Attention: Bowtie2 And Multiple Hits
bowtie next-gen mapping Forum
updated 8.8 years ago by ▴ 150 • written 8.8 years ago by 9.6k
99
votes
34
replies
22k
views
30 follow
Forum: List of cloud genomics companies
cloud genomics Forum
updated 10 weeks ago by 20k • written 7.7 years ago by ★ 3.5k
121
votes
44
replies
22k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
RNA-Seq NGS adapter Forum
written 4.9 years ago by ▴ 780
202
votes
41
replies
21k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics Forum cram gatk galaxy
updated 6.7 years ago by 88k • written 6.7 years ago by ★ 4.9k
150
votes
39
replies
20k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics Forum
updated 3.8 years ago by 75k • written 8.5 years ago by 3.0k
135
votes
41
replies
18k
views
20 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
Forum
updated 7.8 years ago by ★ 1.1k • written 8.1 years ago by ★ 1.5k
91
votes
20
replies
17k
views
15 follow
Forum: Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
RNA-Seq next-gen WGS Exome N-of-one Forum
3.9 years ago by Obi Griffith 19k
89
votes
23
replies
17k
views
16 follow
Forum: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
bioinformatics Forum
written 7.5 years ago by ▴ 490
258
votes
47
replies
17k
views
35 follow
Forum: Bioinformatics courses, workshops or training
Training Workshop Tutorial Courses Forum
3.2 years ago by Deepak Tanwar ★ 4.1k
65
votes
26
replies
17k
views
13 follow
Forum: Macosx For Bioinformatics?
linux Forum
updated 7.6 years ago by 49k • written 7.6 years ago by 11k
279
votes
69
replies
16k
views
23 follow
Forum: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
subjective Forum
updated 6.1 years ago by ▴ 10 • written 10.0 years ago by ▴ 160
156
votes
21
replies
14k
views
17 follow
Forum: Advice For Newcomers To The Bioinformatics Field
bioinformatics Forum
updated 3.0 years ago by • 0 • written 8.1 years ago by 8.9k
33
votes
5
replies
14k
views
9 follow
Forum: How do I explain to my non-bioinformatician labmates how to interpret principal components?
RNA-Seq pca analysis communication Forum
updated 3.3 years ago by 75k • written 5.6 years ago by ▴ 570
81
votes
34
replies
14k
views
11 follow
Forum: Benchmark - Comparison of Different NGS Mappers
mRNA-Seq benchmark NGS mapper News Forum
6.6 years ago by David Langenberger 9.6k
31
votes
13
replies
13k
views
8 follow
Forum: Should I Pursue A Bioinformatics Msc?
bioinformatics Forum
updated 8.5 years ago by ★ 4.0k • written 8.5 years ago by ▴ 70
36
votes
21
replies
13k
views
9 follow
Forum: What Is Your Favorite Conserved Protein?
protein conservation Forum
updated 7.9 years ago by ★ 1.1k • written 7.9 years ago by 11k
93
votes
50
replies
13k
views
17 follow
Forum: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
Forum
updated 7.6 years ago by ▴ 350 • written 7.7 years ago by 88k
19
votes
0
replies
13k
views
Forum: Hadley Wickham of ggplot and RStudio uses this
uses-this Forum
updated 4 months ago by 34k • written 6.8 years ago by 88k
187
votes
89
replies
12k
views
25 follow
Forum: Petition to demand that the Federal German Government release all genomic data on SARS-COV-2
GISAID Forum
updated 26 days ago by ▴ 40 • written 16 months ago by 88k
61
votes
11
replies
12k
views
9 follow
Forum: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
programming Forum
updated 6.5 years ago by ★ 2.7k • written 8.1 years ago by 19k
48
votes
38
replies
12k
views
8 follow
Forum: Eukaryotic Genome Annotation in 2016
genome annotation software Forum
updated 5.4 years ago by ▴ 340 • written 5.4 years ago by 11k
64
votes
29
replies
12k
views
15 follow
Forum: Fundamentals Of Designing Biological Databases?
database tutorial Forum
updated 3.5 years ago by ▴ 160 • written 10.7 years ago by ▴ 130
42
votes
21
replies
12k
views
10 follow
Forum: A Database Of Signatures Of Selection In The 1000 Genomes Dataset
1000genomes selection human Forum
updated 5.1 years ago by • 0 • written 7.4 years ago by 27k
142
votes
35
replies
11k
views
20 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
bioinformatics Forum humor
updated 5.8 years ago by • 0 • written 8.3 years ago by 88k
8
votes
2
replies
11k
views
Forum: List of popular bioinformatics software/tools
bioinformatic sofwares Forum
updated 6.8 years ago by 88k • written 6.8 years ago by ▴ 20
290
votes
55
replies
11k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 4 weeks ago by 34k • written 8.2 years ago by 8.6k
20
votes
22
replies
11k
views
11 follow
Forum: Nextseq for analysts
nextseq basespace casava bcl2fastq Forum
updated 6.8 years ago by ▴ 70 • written 7.1 years ago by 5.2k
8
votes
9
replies
10k
views
6 follow
Forum: Open Source Bioinformatics projects for beginners
Begginers Bioinformatics Open Source Forum
updated 3.5 years ago by ★ 2.1k • written 3.5 years ago by ▴ 40
0
votes
0
replies
10k
views
Forum: Characteristics Analysis of Biotechnology Industry
biotechnology industry Page
6.2 years ago by vera.anderson2015 • 0
105
votes
46
replies
9.5k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
Forum
written 7.9 years ago by ★ 1.1k
56
votes
43
replies
9.5k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
RNA-Seq NGS alignment genome sequence Forum
updated 5 months ago by ▴ 20 • written 2.5 years ago by 9.6k
2
votes
0
replies
9.4k
views
Forum: Biostar Forum Posting Guidelines
Forum
updated 9 weeks ago by • 0 • written 9.3 years ago by 88k
60
votes
70
replies
9.3k
views
21 follow
Forum: Biostar 2.0 released
biostar Forum
updated 3 months ago by 34k • written 7.3 years ago by 88k
31
votes
13
replies
9.2k
views
10 follow
Forum: What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
phd bioinformatics genomics Forum
updated 6.3 years ago by ▴ 60 • written 9.0 years ago by ▴ 640
7
votes
9
replies
8.9k
views
Forum: How to calculate FPKM values of interested gene
RNA-Seq FPKM cufflinks bowtie2 Forum
updated 7.1 years ago by 8.0k • written 7.1 years ago by ▴ 130
12
votes
6
replies
8.8k
views
Forum: Looking for opinions on PhD programs in Genetics and Genomics/Bioinformatics
PhD Genomics Forum
updated 6.7 years ago by 7.2k • written 6.7 years ago by ▴ 110
0
votes
2
replies
8.7k
views
Forum: Secondary Structure Prediction software RNA/DNA
secondary structure dna rna software Forum
updated 6.7 years ago by ★ 2.1k • written 6.7 years ago by ★ 3.5k
57
votes
14
replies
8.7k
views
14 follow
Forum: Interesting bioinformatics blogs (2017 edition)
blogs Forum
updated 3.1 years ago by ▴ 590 • written 4.3 years ago by 45k
44
votes
19
replies
8.5k
views
10 follow
Forum: Is Software Development a key part of Bioinformatics?
Software Development Bioinformatics Forum
written 6.6 years ago by ▴ 50
1,000 results • Page 1 of 20
Recent Votes
C: Is indel realigning necessary for INDEL discovery?
A: Is indel realigning necessary for INDEL discovery?
Enhanced Volcano removal of labels
A: Enhanced Volcano removal of labels
Answer: What does that dip in the density plot mean from a single cell data analysis?
Comment: What does that dip in the density plot mean from a single cell data analysis?
Answer: What does that dip in the density plot mean from a single cell data analysis?
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Recent Replies
Comment: gene expression of specifics gene by Bioinformatics1 • 0
I have log2(Fold Change) for two groups. Is there any instruction/pipelines I can use for gene expression using log2(Fold Change) in R? M…
Answer: use a list of id to extract sequence from different genomics by Pierre Lindenbaum 137k
[linearize][1] and extract the ID at the same time, sort both list, join, restore the fasta: join -t $'\t' -1 1 -2 1 \ <…
Comment: use a list of id to extract sequence from different genomics by LZH289 • 0
thank you!
Comment: What does betaPrior do in DESEQ? by i.sudbery 12k
Those DE genes - is that after a log fold change cut off?
Comment: How to filter VEP results of "missing values" by Yiming • 0
Thank you so much! I found an error with my code. And this works: filter_vep -i VEP_annotated.vcf -o VEP_filtered.vcf --format vcf --fo…
Comment: use a list of id to extract sequence from different genomics by GenoMax 104k
Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time. <br /> <img src="…
Comment: gnomaAD exome and genome AF differences by humzakhan340 • 0
The point that genomes are much larger and more computationally intensive to work with is well-taken. However, promoter information is not…
Comment: ERROR [mem_sam_pe] paired reads have different names -- during binning in metaW by swbarnes2 10k
Do you understand what the problem is? Have you figured out which step introduced it?
Comment: gene expression of specifics gene by Bioinformatics1 • 0
Thanks Hyper-Odin
Comment: inquiry related to snpsift by rheab1230 • 0
I have one question related to earlier step where you are formating the .vcf file. You are removing white space and removing format tags ex…
Comment: inquiry related to snpsift by rheab1230 • 0
Hey Kevin, its working now. Earlier I use conda to install the software. But that is not working. So I went to bcftools site and downloaded…
Comment: What does that dip in the density plot mean from a single cell data analysis? by m.sadman.sakib ▴ 100
Thank you very much for the great explanation! Really appreciate it!
Comment: Which method is the best for using in "dba.count" in Diffbind R package by m.sadman.sakib ▴ 100
Thank you very much, Rory!
Comment: How to merge folders that have similar (not the same) names, in a folder keeping by cpad0112 16k
**Before** ``` $ tree . . ├── 123_S1_R1_001 │   └── 123_S1_R1_001.fastq.gz ├── 123_S1_R2_001 │   └── 123_S1_R2_001.fastq.gz ├── 456_S25_R1…
Comment: SNP density plot of aedes genome using bed file by Hamid Ghaedi ★ 1.7k
There is no figure to look at that!
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