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1,000 results • Page 1 of 20
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361
votes
58
replies
66k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
education books
updated 5 weeks ago by 41k • written 13.7 years ago by 99k
1.2k
votes
206
replies
54k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 6 months ago by ★ 1.3k • written 12.7 years ago by 22k
125
votes
46
replies
47k
views
21 follow
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
visualization ChIP-Seq homer ngsplot deeptools
updated 7 months ago by 41k • written 7.7 years ago by ★ 3.2k
121
votes
35
replies
41k
views
20 follow
Forum: Snakemake vs. Nextflow: strengths and weaknesses
snakemake nextflow
updated 6 months ago by 41k • written 6.4 years ago by ▴ 810
206
votes
58
replies
40k
views
31 follow
Forum: Will Python Take The Place Of R?
r statistics python biopython
updated 9 months ago by 41k • written 10.5 years ago by 9.7k
20
votes
12
replies
38k
views
7 follow
Forum: When To Use Sed Awk Over Perl Or Python
perl python awk
updated 9 months ago by 41k • written 9.9 years ago by 9.7k
120
votes
33
replies
38k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 6 months ago by ★ 2.4k • written 10.3 years ago by 11k
12
votes
4
replies
37k
views
Forum: BWA command guide
BWA
updated 9 months ago by 41k • written 5.8 years ago by ★ 1.1k
42
votes
17
replies
37k
views
15 follow
Forum: List Of Genome Sequencing Centers/Institutes
genomics institutes
updated 9 months ago by 41k • written 10.8 years ago by 19k
197
votes
27
replies
33k
views
20 follow
Forum: Bioinformatics Cartoon
bioinformatics
updated 4 months ago by 41k • written 11.9 years ago by ★ 2.3k
21
votes
3
replies
32k
views
Forum: Did You Know That Researchgate Is Spamming Your Colleagues (Perhaps Without Your Explicit Consent)?
researchgate
updated 9 months ago by 41k • written 10.8 years ago by 20k
251
votes
36
replies
32k
views
27 follow
Forum: How Do You Manage Your Files & Directories For Your Projects ?
project-management file-management
updated 8 months ago by 41k • written 13.6 years ago by 158k
130
votes
44
replies
31k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 8 months ago by 41k • written 7.2 years ago by ★ 1.0k
100
votes
38
replies
29k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 6 days ago by 22k • written 10.0 years ago by ★ 3.6k
57
votes
19
replies
27k
views
6 follow
Forum: Attention: Bowtie2 And Multiple Hits
next-gen bowtie mapping
updated 9 months ago by 41k • written 11.1 years ago by 10k
203
votes
41
replies
24k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics cram gatk galaxy
updated 9 months ago by 41k • written 9.0 years ago by ★ 5.2k
151
votes
39
replies
24k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics
updated 9 months ago by 41k • written 10.8 years ago by 3.0k
262
votes
48
replies
22k
views
37 follow
Forum: Bioinformatics courses, workshops or training
Workshop Training Courses
updated 9 months ago by ★ 1.0k • written 8.5 years ago by ★ 4.2k
106
votes
23
replies
21k
views
16 follow
Forum: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
bioinformatics
updated 9 months ago by 41k • written 9.8 years ago by ▴ 590
138
votes
42
replies
21k
views
22 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
meta
updated 8 months ago by 3.8k • written 10.5 years ago by ★ 1.6k
279
votes
69
replies
19k
views
23 follow
Forum: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
subjective
updated 9 months ago by 41k • written 12.3 years ago by ▴ 160
65
votes
26
replies
19k
views
13 follow
Forum: Macosx For Bioinformatics?
linux
updated 9 months ago by 41k • written 10.0 years ago by 11k
36
votes
21
replies
18k
views
9 follow
Forum: What Is Your Favorite Conserved Protein?
protein conservation
updated 9 months ago by 41k • written 10.3 years ago by 11k
175
votes
46
replies
18k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
9 days ago by Istvan Albert 99k
9
votes
9
replies
16k
views
6 follow
Forum: Open Source Bioinformatics projects for beginners
Open-Source Beginners
updated 6 months ago by 41k • written 5.8 years ago by ▴ 40
48
votes
38
replies
16k
views
8 follow
Forum: Eukaryotic Genome Annotation in 2016
software genome annotation
updated 7 months ago by 41k • written 7.7 years ago by 11k
31
votes
13
replies
16k
views
8 follow
Forum: Should I Pursue A Bioinformatics Msc?
career
updated 9 months ago by 41k • written 10.8 years ago by ▴ 70
64
votes
29
replies
15k
views
15 follow
Forum: Fundamentals Of Designing Biological Databases?
database
updated 9 months ago by 41k • written 13.1 years ago by ▴ 130
290
votes
55
replies
15k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 9 months ago by 41k • written 10.6 years ago by 10k
93
votes
50
replies
15k
views
17 follow
Forum: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
personal-genomics 23andMe
updated 9 months ago by 41k • written 10.0 years ago by 99k
57
votes
43
replies
15k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 8 months ago by 41k • written 4.8 years ago by 10k
63
votes
11
replies
15k
views
9 follow
Forum: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
programming
updated 9 months ago by 41k • written 10.4 years ago by 19k
42
votes
21
replies
14k
views
10 follow
Forum: A Database Of Signatures Of Selection In The 1000 Genomes Dataset
1000genomes human selection
updated 9 months ago by 41k • written 9.7 years ago by 28k
19
votes
0
replies
14k
views
Forum: Hadley Wickham of ggplot and RStudio uses this
uses-this
updated 8 months ago by 41k • written 9.1 years ago by 99k
6
votes
12
replies
13k
views
11 follow
Forum: Online/remote/distance learning/ - partime/fulltime - PhD, Bioinformatics in USA
PhD university
updated 8 months ago by 41k • written 7.2 years ago by ▴ 20
20
votes
22
replies
13k
views
11 follow
Forum: Nextseq for analysts
basespace casava bcl2fastq nextseq
updated 8 months ago by 41k • written 9.4 years ago by 5.3k
61
votes
70
replies
13k
views
21 follow
Forum: Biostar 2.0 released
meta biostars
updated 9 months ago by 41k • written 9.6 years ago by 99k
23
votes
6
replies
13k
views
Forum: List Of File Formats Used In Bioinformatics?
bioinformatics
updated 4 months ago by 41k • written 11.1 years ago by ▴ 140
105
votes
46
replies
12k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 9 months ago by 41k • written 10.3 years ago by ★ 1.1k
39
votes
21
replies
12k
views
10 follow
Forum: Orientation of PE reads a review of --fr --ff and --rf meanings
RNA-Seq
updated 6 months ago by 41k • written 5.1 years ago by 8.4k
8
votes
2
replies
12k
views
Forum: List of popular bioinformatics software/tools
software
updated 8 months ago by 41k • written 9.2 years ago by ▴ 20
60
votes
14
replies
12k
views
16 follow
Forum: Interesting bioinformatics blogs (2017 edition)
blogs
updated 9 months ago by 41k • written 6.7 years ago by 47k
6
votes
5
replies
11k
views
Forum: Single-end sequencing versus paired-end
Assembly snp sequencing
updated 5 months ago by 41k • written 3.8 years ago by ▴ 20
12
votes
8
replies
11k
views
8 follow
Forum: "Separate enrichment analysis of pathways for up- and downregulated genes"
enrichmnet-analysis
updated 8 months ago by 41k • written 9.6 years ago by ★ 2.9k
21
votes
7
replies
11k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 8 weeks ago by ▴ 100 • written 7.6 years ago by 11k
144
votes
62
replies
11k
views
23 follow
Forum: Is The Biostar Fading? (Updated For 2014)
meta biostars
updated 9 months ago by 41k • written 12.7 years ago by ★ 2.9k
32
votes
13
replies
10k
views
10 follow
Forum: What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
genomics phd
updated 9 months ago by 41k • written 11.3 years ago by ▴ 650
15
votes
14
replies
10k
views
6 follow
Forum: How Should I Go About Preparing For My Bioinformatics Phd Admissions Interview?
phd
updated 9 months ago by 41k • written 9.8 years ago by ▴ 150
24
votes
15
replies
10k
views
11 follow
Forum: PhD in bioinformatics or biostatistics as a wet-lab scientist?
biology statistics PhD
updated 8 months ago by 41k • written 9.2 years ago by ▴ 70
38
votes
19
replies
10k
views
10 follow
Forum: Kallisto New RNA-seq quantification method discussion
RNA-Seq
updated 7 months ago by 41k • written 7.6 years ago by ▴ 550
1,000 results • Page 1 of 20
Recent Votes
Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
Answer: How should I run ssgsea analysis ?
Comment: Parsing XML file from dbGaP
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
Comment: SPAdes error: finished abnormally, OS return value: 21
Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
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Recent Replies
Comment: featureCounts results: low rate of 'Successfully assigned alignments' by GenoMax 136k
> I run a blast with the sequences and most of them belongs to globin. Globin reads shown in your FastQC report are not going to add up to…
Comment: featureCounts results: low rate of 'Successfully assigned alignments' by kvn95ss ▴ 20
Almost all your samples have the over represented sequence, you can blast the top 10 recurring sequences and see what it could be.
Comment: How to deeply sequence long inserts by GenoMax 136k
Linked read kits have not been offered by 10x genomics from last 3-4 years so that is not an option. Illumina now offers a long read tech…
Comment: Viral genes not showing up in combined mouse+virus alignment by GenoMax 136k
Try taking out the additional header lines from the combined GTF file. `NC_005089.1` lines should be immediately followed by `NC_001846.1` …
Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres by Nitin Narwade ★ 1.5k
Hmmmmm, okay. In this case I could think of another workaround, instead of drawing line/marks, you can add another modality to your plot, …
Comment: featureCounts results: low rate of 'Successfully assigned alignments' by Hamtaro ▴ 10
I added the fastQC. What do you think of the possible cause I have proposed?
Comment: Problem in installing 'magick' R package by Jean-Karim Heriche 26k
This isn't a bioinformatics question. What do you mean by "install all the dependencies"? Did you read the error message? It's telling you …
Answer: Problem in installing 'magick' R package by DBScan ▴ 200
Have you read the error message? it tells you to try installing the Magick++ library: ``` Try installing: deb: libmagick++-dev (Debian, …
Answer: FVA on Sybil by Thomas • 0
The first half of this vector should be your minimal fluxes per reaction and the second half your maximal fluxes per reaction. Thus this ve…
Comment: AttributeError: module 'collections' has no attribute 'Hashable' by jiyoung ▴ 20
Currently I am experiencing the same problem. Have you solved this?
Comment: Help doing differential expression analysis -experimental design and gProfiler T by rajabolacuan • 0
Good Information Sir
Comment: Viral genes not showing up in combined mouse+virus alignment by cook.675 ▴ 200
Hello I was curious to follow up and wonder if anyone knew why the viral genes are not showing up in the count matrix? I can't seem to solv…
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu by CTLong ▴ 10
That makes sense. Thanks for the reminder.
Comment: bwa mem hangs after a few thousand reads by GenoMax 136k
Then you probably are best served by talking with your local sys admins to see where the issue may be.
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu by GenoMax 136k
> even if tpe and tbo are trailing after adapter and quality trimming Priority/order of operations in coded in the program. Brian will be …
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