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1,000 results • Page 1 of 20
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361
votes
57
replies
61k
views
43 follow
Forum: Recommend Your Favorite Bioinformatics Books
books education
updated 8 months ago by 85k • written 13.3 years ago by 98k
1.2k
votes
206
replies
50k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 7 days ago by ★ 1.2k • written 12.2 years ago by 21k
125
votes
46
replies
44k
views
20 follow
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
visualization ChIP-Seq homer ngsplot deeptools
updated 9 weeks ago by 39k • written 7.3 years ago by ★ 3.2k
294
votes
27
replies
42k
views
33 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing papers
updated 10 months ago by 39k • written 7.4 years ago by ★ 2.4k
206
votes
58
replies
39k
views
31 follow
Forum: Will Python Take The Place Of R?
r statistics python biopython
updated 3 months ago by 39k • written 10.1 years ago by 9.6k
115
votes
35
replies
38k
views
20 follow
Forum: Snakemake vs. Nextflow: strengths and weaknesses
snakemake nextflow
updated 26 days ago by 39k • written 6.0 years ago by ▴ 760
20
votes
12
replies
37k
views
7 follow
Forum: When To Use Sed Awk Over Perl Or Python
perl python awk
updated 3 months ago by 39k • written 9.4 years ago by 9.6k
120
votes
33
replies
36k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 29 days ago by ★ 2.3k • written 9.8 years ago by 11k
41
votes
17
replies
36k
views
15 follow
Forum: List Of Genome Sequencing Centers/Institutes
genomics institutes
updated 3 months ago by 39k • written 10.3 years ago by 19k
12
votes
4
replies
35k
views
Forum: BWA command guide
BWA
updated 3 months ago by 39k • written 5.3 years ago by ★ 1.1k
21
votes
3
replies
32k
views
Forum: Did You Know That Researchgate Is Spamming Your Colleagues (Perhaps Without Your Explicit Consent)?
researchgate
updated 3 months ago by 39k • written 10.3 years ago by 20k
251
votes
36
replies
31k
views
27 follow
Forum: How Do You Manage Your Files & Directories For Your Projects ?
project-management file-management
updated 10 weeks ago by 39k • written 13.1 years ago by 154k
126
votes
44
replies
28k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 3 months ago by 39k • written 6.7 years ago by ▴ 970
74
votes
14
replies
28k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 11 months ago by 39k • written 13.0 years ago by 4.5k
100
votes
38
replies
28k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 4 weeks ago by 21k • written 9.6 years ago by ★ 3.6k
57
votes
19
replies
26k
views
6 follow
Forum: Attention: Bowtie2 And Multiple Hits
next-gen bowtie mapping
updated 3 months ago by 39k • written 10.6 years ago by 9.9k
202
votes
41
replies
23k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics cram gatk galaxy
updated 3 months ago by 39k • written 8.6 years ago by ★ 5.2k
151
votes
39
replies
23k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics
updated 3 months ago by 39k • written 10.4 years ago by 3.0k
262
votes
48
replies
21k
views
37 follow
Forum: Bioinformatics courses, workshops or training
Workshop Training Courses
updated 3 months ago by ▴ 970 • written 8.1 years ago by ★ 4.2k
138
votes
42
replies
20k
views
22 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
meta
updated 10 weeks ago by ★ 2.9k • written 10.0 years ago by ★ 1.6k
106
votes
23
replies
20k
views
16 follow
Forum: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
bioinformatics
updated 3 months ago by 39k • written 9.3 years ago by ▴ 590
306
votes
65
replies
20k
views
48 follow
Forum: Your Favorite Bioinformatics Blogs (March 2010)
subjective
updated 8 months ago by 85k • written 13.3 years ago by 27k
91
votes
20
replies
19k
views
15 follow
Forum: Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
N-of-one WGS RNA-Seq next-gen Exome
updated 7 months ago by 39k • written 9.1 years ago by 20k
65
votes
26
replies
18k
views
13 follow
Forum: Macosx For Bioinformatics?
linux
updated 3 months ago by 39k • written 9.5 years ago by 11k
286
votes
64
replies
18k
views
44 follow
Forum: Bioinformatics "Cheat Sheet"
cheat sheet
updated 8 months ago by 85k • written 12.2 years ago by 22k
279
votes
69
replies
18k
views
23 follow
Forum: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
subjective
updated 3 months ago by 39k • written 11.9 years ago by ▴ 160
36
votes
21
replies
17k
views
9 follow
Forum: What Is Your Favorite Conserved Protein?
protein conservation
updated 3 months ago by 39k • written 9.8 years ago by 11k
160
votes
22
replies
16k
views
19 follow
Forum: Advice For Newcomers To The Bioinformatics Field
advice career
updated 7 months ago by 39k • written 9.9 years ago by 9.6k
170
votes
43
replies
16k
views
25 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
updated 5 weeks ago by 11k • written 10.2 years ago by 98k
33
votes
5
replies
15k
views
9 follow
Forum: How do I explain to my non-bioinformatician labmates how to interpret principal components?
RNA-Seq communication analysis pca
updated 10 months ago by 39k • written 7.4 years ago by ▴ 620
48
votes
38
replies
15k
views
8 follow
Forum: Eukaryotic Genome Annotation in 2016
software genome annotation
updated 9 weeks ago by 39k • written 7.2 years ago by 11k
31
votes
13
replies
15k
views
8 follow
Forum: Should I Pursue A Bioinformatics Msc?
career
updated 3 months ago by 39k • written 10.3 years ago by ▴ 70
9
votes
9
replies
15k
views
6 follow
Forum: Open Source Bioinformatics projects for beginners
Open-Source Beginners
updated 20 days ago by 39k • written 5.4 years ago by ▴ 40
64
votes
29
replies
14k
views
15 follow
Forum: Fundamentals Of Designing Biological Databases?
database
updated 3 months ago by 39k • written 12.6 years ago by ▴ 130
93
votes
50
replies
14k
views
17 follow
Forum: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
personal-genomics 23andMe
updated 3 months ago by 39k • written 9.5 years ago by 98k
290
votes
55
replies
14k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 4 months ago by 39k • written 10.1 years ago by 9.6k
61
votes
11
replies
14k
views
9 follow
Forum: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
programming
updated 3 months ago by 39k • written 9.9 years ago by 19k
57
votes
43
replies
14k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 3 months ago by 39k • written 4.4 years ago by 9.9k
42
votes
21
replies
14k
views
10 follow
Forum: A Database Of Signatures Of Selection In The 1000 Genomes Dataset
1000genomes human selection
updated 3 months ago by 39k • written 9.3 years ago by 27k
19
votes
0
replies
13k
views
Forum: Hadley Wickham of ggplot and RStudio uses this
uses-this
updated 3 months ago by 39k • written 8.7 years ago by 98k
0
votes
0
replies
13k
views
Forum: Characteristics Analysis of Biotechnology Industry
biotechnology-industry
updated 11 months ago by 39k • written 8.1 years ago by • 0
47
votes
19
replies
12k
views
10 follow
Forum: Is Software Development a key part of Bioinformatics?
Software-Development
updated 9 months ago by 39k • written 8.4 years ago by ▴ 70
20
votes
22
replies
12k
views
11 follow
Forum: Nextseq for analysts
basespace casava bcl2fastq nextseq
updated 3 months ago by 39k • written 9.0 years ago by 5.3k
6
votes
12
replies
12k
views
11 follow
Forum: Online/remote/distance learning/ - partime/fulltime - PhD, Bioinformatics in USA
PhD university
updated 3 months ago by 39k • written 6.7 years ago by ▴ 20
8
votes
2
replies
12k
views
Forum: List of popular bioinformatics software/tools
software
updated 3 months ago by 39k • written 8.7 years ago by ▴ 20
105
votes
46
replies
12k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 3 months ago by 39k • written 9.8 years ago by ★ 1.1k
61
votes
70
replies
11k
views
21 follow
Forum: Biostar 2.0 released
meta biostars
updated 3 months ago by 39k • written 9.2 years ago by 98k
60
votes
14
replies
11k
views
14 follow
Forum: Interesting bioinformatics blogs (2017 edition)
blogs
updated 3 months ago by 39k • written 6.2 years ago by 47k
32
votes
16
replies
10k
views
9 follow
Forum: How to switch from bench research to computational biology?
career
updated 11 months ago by 39k • written 8.2 years ago by ▴ 70
32
votes
13
replies
10k
views
10 follow
Forum: What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
genomics phd
updated 3 months ago by 39k • written 10.9 years ago by ▴ 650
1,000 results • Page 1 of 20
Recent Votes
NM_transcript ID gene identification
Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
A: Mouse promoter regions
Answer: How to get information about promoter from bulk-RNAseq?
A: Extracting Flanking Regions across TSS using R scripts
A: Mouse promoter regions
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Recent Replies
Comment: pal2nal -nogap -nomismatch options not working by Marie • 0
Hi, did you end up solving this? I am running into the same issue. Marie
Comment: How to get information about promoter from bulk-RNAseq? by camillab. ▴ 130
and what about enhancer? is it possible to do it from a bulk-RNAseq?
Comment: How to get information about promoter from bulk-RNAseq? by camillab. ▴ 130
yes! clearly the terminology on my side needs to improved!
Comment: How to get information about promoter from bulk-RNAseq? by rpolicastro 12k
Generally speaking, most promoters only initiate transcription for a single gene, with a single gene potentially having multiple promoters …
Answer: How to get information about promoter from bulk-RNAseq? by Trivas ★ 1.2k
I'd probably select the genes of interest from your bulk RNA-seq results then use the UCSC table browser to get the sequence upstream of th…
Comment: How to add annotation columns with specific colors to the heatmap? by Ram 39k
Show us your exact code - it is quite easy to tweak colors in ComplexHeatmap with the `col=` argument.
Comment: VCF file CSQ flag by Ram 39k
True, but it's not technically impossible to annotate GVCFs, which is why I did not address that point.
Comment: Creating a local version of Clustered NR database by PeterC_NCBI ▴ 260
@genomax Sorry for the delay in reply. We're still working out the details of what exactly to provide. One idea is to provide just the rep…
Comment: Shannon's Entropy by Sliding Window in R by rohitsatyam102 ▴ 690
Hi Were u able to achieve this?
Comment: Differences in GTF files hg19 and hg38 by GenoMax 130k
Since this is not an answer to the original question do not add it as such. I moved your last comment to the correct spot it should have be…
Comment: VCF file CSQ flag by Pierre Lindenbaum 154k
if your talking about the gvcf produced by HaplotypeCaller with ERC=GVCF, you don't annote g.vcf files , you must first merge the g.vcf.f…
Comment: [python]sklearn.ensemble.RandomForestClassifier(TypeError: string indices must b by Ram 39k
https://www.biostars.org/u/127538/ : Please delete this question or it will be deleted by moderators in a few days.
Comment: VCF file CSQ flag by Ram 39k
A gvcf files has blocks for both variant loci and non-variant loci, so you won't see a CSQ for each record, only for those variant loci wit…
Comment: Differences in GTF files hg19 and hg38 by heureuse • 0
Thank you very much. I get it from UCSC.
Comment: [python]sklearn.ensemble.RandomForestClassifier(TypeError: string indices must b by Arup Ghosh 3.2k
This post does not fit the theme of this forum.
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