Limit : all time
all time today this week this month this year
1,000 results • Page 2 of 20
Sort: Views
Rank Views Votes Replies
8
votes
9
replies
10k
views
Forum: How to calculate FPKM values of interested gene
cufflinks FPKM bowtie2 RNA-Seq
updated 19 months ago by 39k • written 8.9 years ago by ▴ 130
32
votes
16
replies
10k
views
9 follow
Forum: How to switch from bench research to computational biology?
career
updated 11 months ago by 39k • written 8.2 years ago by ▴ 70
32
votes
13
replies
10k
views
10 follow
Forum: What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
genomics phd
updated 3 months ago by 39k • written 10.8 years ago by ▴ 650
12
votes
8
replies
10k
views
8 follow
Forum: "Separate enrichment analysis of pathways for up- and downregulated genes"
enrichmnet-analysis
updated 12 weeks ago by 39k • written 9.1 years ago by ★ 2.9k
37
votes
21
replies
10.0k
views
10 follow
Forum: Orientation of PE reads a review of --fr --ff and --rf meanings
RNA-Seq
updated 5 days ago by 39k • written 4.6 years ago by 7.9k
15
votes
14
replies
9.9k
views
6 follow
Forum: How Should I Go About Preparing For My Bioinformatics Phd Admissions Interview?
phd
updated 12 weeks ago by 39k • written 9.3 years ago by ▴ 150
15
votes
6
replies
9.7k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 7 weeks ago by 39k • written 7.1 years ago by 11k
3
votes
2
replies
9.6k
views
Forum: How To Provide Reference Sequence Dictionary To Reordersam?
picard gatk
updated 3 months ago by 39k • written 9.5 years ago by 8.2k
12
votes
6
replies
9.6k
views
Forum: Looking for opinions on PhD programs in Genetics and Genomics/Bioinformatics
PhD Genomics
updated 15 months ago by 39k • written 8.6 years ago by ▴ 110
144
votes
62
replies
9.6k
views
23 follow
Forum: Is The Biostar Fading? (Updated For 2014)
meta biostars
updated 3 months ago by 39k • written 12.2 years ago by ★ 2.9k
24
votes
15
replies
9.5k
views
11 follow
Forum: PhD in bioinformatics or biostatistics as a wet-lab scientist?
biology statistics PhD
updated 11 weeks ago by 39k • written 8.7 years ago by ▴ 70
10
votes
6
replies
9.5k
views
Forum: Is it worth getting a Masters in Bioinformatics, financially?
career
updated 12 weeks ago by 39k • written 9.0 years ago by ▴ 20
37
votes
19
replies
9.5k
views
10 follow
Forum: Kallisto New RNA-seq quantification method discussion
RNA-Seq
updated 7 weeks ago by 39k • written 7.1 years ago by ▴ 540
34
votes
12
replies
9.5k
views
9 follow
Forum: Is going back to the wet lab worth it?
careerwet-lab
updated 6 weeks ago by 39k • written 6.4 years ago by ▴ 760
6
votes
5
replies
9.5k
views
Forum: Single-end sequencing versus paired-end
sequencing single versus paired Assembly snp Forum
3.3 years ago by Sujata ▴ 20
0
votes
2
replies
9.4k
views
Forum: Secondary Structure Prediction software RNA/DNA
dna secondary-structure software rna
updated 11 weeks ago by 39k • written 8.5 years ago by ★ 3.6k
50
votes
8
replies
9.1k
views
6 follow
Forum: Encode Commentary From Dan Graur
encode
updated 3 months ago by 39k • written 10.3 years ago by 16k
5
votes
4
replies
9.1k
views
Forum: List of unresolved problems in Computational Biology / Bioinformatics?
computational-biology problems
updated 11 weeks ago by 39k • written 8.4 years ago by ★ 1.3k
11
votes
12
replies
9.0k
views
Forum: need ideas for bioinformatics research project (undergraduates)
alignment sequence
updated 13 months ago by 39k • written 8.3 years ago by ▴ 10
86
votes
29
replies
8.7k
views
9 follow
Forum: What is the future of EMBL-EBI (and European bioinformatics in general) in case of a 'Brexit'?
EU brexit EBI politics
updated 7 weeks ago by 39k • written 7.0 years ago by 52k
11
votes
10
replies
8.7k
views
Forum: Looking For Bioinformatics Job In Germany
bioinformatician career
updated 12 weeks ago by 39k • written 9.2 years ago by ▴ 520
29
votes
10
replies
8.7k
views
Forum: Principles of Tidy Data (Hadley Wickham) and the VCF format
vcf tidy-data
updated 15 months ago by 39k • written 8.5 years ago by 27k
51
votes
24
replies
8.4k
views
7 follow
Forum: Bio-informatics salary distribution versus Java salary distribution in the UK
career
updated 17 months ago by 39k • written 8.8 years ago by ★ 5.2k
88
votes
32
replies
8.3k
views
11 follow
Forum: Vintage / unconventional pictures for Bioinformatics
history picture
updated 14 months ago by 39k • written 8.6 years ago by 154k
67
votes
40
replies
8.3k
views
12 follow
Forum: I want to re-open the old debate: python or perl ?
perl python
updated 15 months ago by 39k • written 8.5 years ago by ★ 2.9k
12
votes
4
replies
8.3k
views
Forum: Bioinformatics/Biotech Firms In India
career
updated 3 months ago by 39k • written 11.1 years ago by ▴ 100
4
votes
5
replies
8.3k
views
Forum: Computer Science's Perspective Comparison : BLAST vs. Clustal Omega ?!
clustal-omega blast
updated 12 months ago by 39k • written 8.2 years ago by ▴ 270
34
votes
11
replies
8.2k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 9 months ago by 39k • written 7.6 years ago by ★ 9.3k
13
votes
7
replies
8.2k
views
Forum: The struggle between fastq and fastq.gz, compressed v/s uncompressed file formats
fastq
updated 18 days ago by 39k • written 5.9 years ago by 5.7k
22
votes
14
replies
8.2k
views
6 follow
Forum: Too late to switch to Bioinformatics?
education career
updated 12 weeks ago by 39k • written 9.0 years ago by ▴ 30
49
votes
4
replies
8.1k
views
Forum: How to add images to a Biostars post
how-to
3 months ago by Ram 39k
10
votes
3
replies
8.1k
views
Forum: Got Multiple Cpus? Activate Them With Gnu Parallel
parallel command-line ngs
updated 3 months ago by 39k • written 9.5 years ago by ★ 4.3k
244
votes
36
replies
8.0k
views
32 follow
Forum: Good Habit for Bioinformatics Analyst or Scientist
Analyst Scientist
updated 7 weeks ago by 39k • written 7.1 years ago by ★ 9.3k
79
votes
35
replies
8.0k
views
17 follow
Forum: Do bioinformaticians often break molecular biologists' hearts by being the first author?
authorship career
updated 2 days ago by • 0 • written 7.5 years ago by ▴ 650
99
votes
21
replies
8.0k
views
14 follow
Forum: How Has Bioinformatics Improved Over Time?
bioinformatics
updated 3 months ago by 39k • written 10.3 years ago by ▴ 370
9
votes
4
replies
8.0k
views
Forum: Biofinysics - How does bowtie2 assign MAPQ scores?
alignment bowtie2
updated 11 weeks ago by 39k • written 8.8 years ago by 7.8k
21
votes
17
replies
7.9k
views
7 follow
Forum: In YOUR personal opinion, who are the top 5 bioinformatics researchers in NGS in 21st century?
next-gen
updated 6 weeks ago by 39k • written 6.4 years ago by ▴ 10
9
votes
19
replies
7.9k
views
Forum: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Same Input Parameters With Openmp Enabled.
velvet genome
updated 3 months ago by 39k • written 9.5 years ago by ▴ 650
13
votes
5
replies
7.9k
views
Forum: Funding Opportunities In Bioinformatics
grant
updated 3 months ago by 39k • written 10.3 years ago by 20k
27
votes
21
replies
7.9k
views
9 follow
Forum: Better for my career: Degree in computer science or Phd in bioinformatics?
computer-science phd
updated 7 weeks ago by 39k • written 6.7 years ago by ★ 1.6k
46
votes
9
replies
7.9k
views
10 follow
Forum: Bioinformatics For Clinicians - What To Teach Them?
education
updated 12 weeks ago by 39k • written 9.5 years ago by ▴ 140
64
votes
8
replies
7.8k
views
7 follow
Forum: Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 3 months ago by 39k • written 10.1 years ago by 20k
26
votes
0
replies
7.8k
views
Forum: Heng Li of BWA and Samtools uses this
uses-this
updated 11 weeks ago by 39k • written 8.6 years ago by 98k
19
votes
9
replies
7.7k
views
6 follow
Forum: How to support bioinformatics tools via Biostars: prefill and watch tags, reply via email
biostars
updated 3 months ago by 39k • written 9.1 years ago by 98k
4
votes
6
replies
7.7k
views
Forum: TCGA: How to tell if the data is exome or WGS?
wgs mutations tcga exome
updated 7 months ago by 39k • written 7.8 years ago by ▴ 110
3
votes
5
replies
7.5k
views
Forum: PopGenome nucleotide diversity
next-gen SNP R gene
updated 8 weeks ago by 39k • written 7.2 years ago by ▴ 10
145
votes
56
replies
7.5k
views
17 follow
Forum: Suggesting The Removal Of Post Closing
biostars
updated 3 months ago by 39k • written 10.2 years ago by 98k
49
votes
36
replies
7.4k
views
11 follow
Forum: New features and bug fixes for Biostar to work on during Google Summer of Code
meta biostars gsoc
updated 3 months ago by 39k • written 9.1 years ago by ▴ 110
47
votes
37
replies
7.4k
views
12 follow
Forum: The Organisation Of Really Contrived Acronyms (Orca)
acronyms
updated 3 months ago by 39k • written 9.8 years ago by 2.3k
28
votes
14
replies
7.4k
views
8 follow
Forum: Should I work first in a Bioinformatics company or get a Ph. D.?
Biochemistry PhD career
updated 7 weeks ago by 39k • written 7.1 years ago by ▴ 20
1,000 results • Page 2 of 20
Recent Votes
Answer: How do you add an ORF that overlaps the two regions where a circular genome is c
C: PLINK logistic regression analysis and covariates
Comment: Regular Expression for conversion
Answer: RNAseq Data and Pipeline
Comment: Salmon Index
Comment: Salmon Index
Resequencing data of pangenome
Recent Locations • All
Canada, 1 minute ago
Oviedo, 5 minutes ago
United States, 5 minutes ago
United States, 5 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 6 minutes ago
Bologna, 7 minutes ago
Republic of Ireland, 7 minutes ago
Recent Awards • All
Popular Question to tarek.mohamed ▴ 350
Popular Question to carlopecoraro2 ★ 2.3k
Popular Question to kamanovae ▴ 80
Popular Question to Lila M ★ 1.2k
Popular Question to oakhamwolf ▴ 20
Commentator to Istvan Albert 98k
Voter to Martin ▴ 20
Recent Replies
Comment: Unusual FASTQ file by Ram 39k
People from the middle east/indian subcontinent often associate the term "post title" with their job title, because a) post translates more…
Comment: How to make a dotplot for bulk RNA average expression ? by bhumm ▴ 40
I am not entirely clear on what you are trying to accomplish, but based on @Trivas answer, I would first transform the data relative to ave…
Answer: What is the best way to clean bulk RNA-seq data? by swbarnes2 13k
There really is no "best". Just find something reasonable, and document what you chose.
Comment: How to deal with duplicated gene IDs in TCGA RNA expression data? by Vincent Laufer ★ 2.8k
ok interesting. Do all, most, some, or a few of the genes have repeated lines. Is there a handy link to the exact file you are looking at?
Answer: Make a BedGraph file by bhumm ▴ 40
Bedtools window piped into genomecov? https://bedtools.readthedocs.io/en/latest/content/tools/window.html https://bedtools.readthedocs.io…
Answer: RNAseq Data and Pipeline by ATpoint 72k
STAR counts are the raw counts, that is appropriate for DESeq2.
Comment: RNAseq Data and Pipeline by swbarnes2 13k
STAR has a GeneCounts output that looks as you describe; three columns, depending on whether one thinks the prep is unstranded, or stranded…
Comment: RNAseq Data and Pipeline by Ram 39k
There is at least one more step that you haven't shared, isn't there? This line alone does not get you the data. You don't need to give us …
Comment: RNAseq Data and Pipeline by turcoa1 • 0
my entire code is not done. All I am trying to understand is if the STAR - counts downloaded from this query have raw reads. There are head…
Comment: RNAseq Data and Pipeline by Ram 39k
Please provide your entire code so those of us wishing to do a quick test can download and check for ourselves. Also, please use the format…
Comment: RNAseq Data and Pipeline by turcoa1 • 0
```r query <- GDCquery( project = "TCGA-THCA", data.category = "Transcriptome Profiling", data.type = "Gene Expression Quantificatio…
Comment: NCBI Common Taxonomy Tree by GenoMax 129k
It may be best to email NCBI help desk with these questions. Post their response here once you hear back from them.
Comment: RNAseq Data and Pipeline by Ram 39k
What data are you downloading? Can you show us your GDCquery commands please?
Comment: Salmon Index by ashleymb1116 • 0
I am working on cow, Bos Taurus. The Arabidopsis code was an example code that was on Salmon's github and an example for indexing they gave…
Comment: Salmon Index by GenoMax 129k
> I am using the Bos Taurus files Which organism are you actually working on? You have mentioned three so far, arabidopsis, human and now …
Traffic: 2393 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6