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1,000 results • Page
3 of 20
Sort: Views
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Views
Votes
Replies
4
votes
6
replies
8.2k
views
Forum:
TCGA: How to tell if the data is exome or WGS?
wgs
mutations
tcga
exome
updated 18 months ago by
Ram
43k • written 8.6 years ago by
Les Ander
▴ 110
28
votes
14
replies
8.2k
views
8 follow
Forum:
Should I work first in a Bioinformatics company or get a Ph. D.?
Biochemistry
PhD
career
updated 11 months ago by
Ram
43k • written 7.9 years ago by
mvasquez16
▴ 20
64
votes
8
replies
8.2k
views
7 follow
Forum:
Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 13 months ago by
Ram
43k • written 10.9 years ago by
Obi Griffith
20k
60
votes
28
replies
8.2k
views
27 follow
Forum:
Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 12 months ago by
Ram
43k • written 9.5 years ago by
Istvan Albert
100k
19
votes
9
replies
8.1k
views
6 follow
Forum:
How to support bioinformatics tools via Biostars: prefill and watch tags, reply via email
biostars
updated 13 months ago by
Ram
43k • written 9.9 years ago by
Istvan Albert
100k
27
votes
0
replies
8.1k
views
Forum:
Heng Li of BWA and Samtools uses this
uses-this
updated 12 months ago by
Ram
43k • written 9.5 years ago by
Istvan Albert
100k
116
votes
35
replies
8.1k
views
18 follow
Forum:
Is Biostar Killing The Bioinformatics Core?
core
biostars
updated 13 months ago by
Ram
43k • written 11.0 years ago by
Jeremy Leipzig
22k
3
votes
5
replies
8.1k
views
Forum:
PopGenome nucleotide diversity
next-gen
SNP
R
gene
updated 11 months ago by
Ram
43k • written 8.1 years ago by
yp
▴ 10
65
votes
57
replies
8.1k
views
12 follow
Forum:
Bioinformatics Mobile App
android
genome
iphone
mutations
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
aeinsights
▴ 20
36
votes
18
replies
8.0k
views
Forum:
How Does Genomebrowse Free Genome Browser From Golden Helix Compare?
visualization
genome-browser
updated 3.0 years ago by
natay
20 • written 11.0 years ago by
Victor Lyuboslavsky
▴ 140
129
votes
38
replies
8.0k
views
21 follow
Forum:
Who are the Greatest Bioinformaticians Of All Time (GBOAT)
bioinformatics
updated 10 months ago by
Ram
43k • written 5.0 years ago by
Istvan Albert
100k
8
votes
12
replies
7.9k
views
9 follow
Forum:
Mac Osx Confusing Vcf With Vcard
vcf
updated 13 months ago by
Ram
43k • written 11.0 years ago by
jjc
▴ 80
16
votes
6
replies
7.9k
views
7 follow
Forum:
What computer skills should I put on my resume?
resume
genome
updated 10 months ago by
Ram
43k • written 6.3 years ago by
Kenny
▴ 30
61
votes
16
replies
7.9k
views
14 follow
Forum:
Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 14 months ago by
Samuel Lampa
★ 1.3k • written 3.5 years ago by
shenwei356
8.4k
15
votes
9
replies
7.9k
views
9 follow
Forum:
Skills & qualities required to be a Bioinformatician
career
skills
updated 21 months ago by
Ram
43k • written 7.0 years ago by
koushikayaluri
▴ 70
5
votes
4
replies
7.8k
views
Forum:
Masters In Bioinformatics Vs Masters In Information Technology (Computer Science)
career
updated 12 months ago by
Ram
43k • written 10.0 years ago by
jasontran600
• 0
34
votes
19
replies
7.8k
views
12 follow
Forum:
Programming Language In Bioinformatics
perl
python
updated 13 months ago by
Ram
43k • written 10.9 years ago by
AndreiR
▴ 260
68
votes
22
replies
7.7k
views
16 follow
Forum:
Learning Python: list of resources
python
updated 11 months ago by
Ram
43k • written 7.4 years ago by
dago
★ 2.8k
29
votes
4
replies
7.7k
views
Forum:
Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
software-error
bowtie2
bioconda
conda
tbb
updated 12 months ago by
Ram
43k • written 3.1 years ago by
mlbendall
▴ 240
42
votes
15
replies
7.7k
views
8 follow
Forum:
Directions In Bioinformatics And Web-Based Data Visualization: Revisiting Javascript?
data-visualization
python
r
updated 13 months ago by
Ram
43k • written 11.4 years ago by
Josh Herr
5.8k
5
votes
6
replies
7.6k
views
Forum:
Msc Bioinformatics Project Ideas
project
updated 13 months ago by
Ram
43k • written 11.9 years ago by
paulawambui
▴ 50
82
votes
32
replies
7.6k
views
13 follow
Forum:
Shall We Go Back To Stackexchange?
meta
updated 13 months ago by
Ram
43k • written 11.3 years ago by
14134125465346445
★ 3.6k
15
votes
6
replies
7.6k
views
Forum:
Calling Single-Barcode Samples from Mixed Runs as Dual-Barcode Samples | Possible Illumina Run QC Flags?
Illumina
De-Multiplexing
barcode
quality-scores
updated 13 months ago by
Ram
43k • written 4.9 years ago by
Charles Warden
8.2k
6
votes
5
replies
7.5k
views
Forum:
Converting GFF to GTF
GTF
GFF
updated 9 months ago by
Ram
43k • written 4.0 years ago by
Juke34
8.5k
26
votes
12
replies
7.4k
views
6 follow
Forum:
Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 10 months ago by
zyan2005
▴ 10 • written 10.4 years ago by
johnblue81
▴ 50
72
votes
18
replies
7.4k
views
17 follow
Forum:
What Is One Book Every Bioinformatician Should Read?
books
updated 13 months ago by
Ram
43k • written 10.8 years ago by
Philipp Bayer
8.3k
65
votes
27
replies
7.3k
views
14 follow
Forum:
What is the reason for most software errors in Bioinformatics according to you?
software-error
blast
sequencing
SNP
R
updated 11 months ago by
Ram
43k • written 8.0 years ago by
harne.priyanka
▴ 110
9
votes
1
reply
7.3k
views
Forum:
Master in statistics or bioinformatics
masters
career
statistics
updated 9 months ago by
Ram
43k • written 9.9 years ago by
indeci
▴ 50
2
votes
3
replies
7.3k
views
Forum:
How To Correctly Speed Up Blast Using Num_Threads
blast
blast-plus
updated 13 months ago by
Ram
43k • written 10.1 years ago by
commonsnook
▴ 40
31
votes
34
replies
7.3k
views
11 follow
Forum:
pros- and cons- : programming skills vs. GUI
programming
lecture
updated 12 months ago by
Ram
43k • written 8.3 years ago by
TriS
★ 4.7k
21
votes
8
replies
7.2k
views
Forum:
Is there ever a good reason to use a log transformation instead of Box-Cox?
data
skew
transformation
power
updated 2.4 years ago by
Istvan Albert
100k • written 2.4 years ago by
Mensur Dlakic
★ 26k
49
votes
19
replies
7.2k
views
13 follow
Forum:
Why Are There No Proteomics Questions In Biostar?
proteomics
biostars
updated 13 months ago by
Ram
43k • written 13.4 years ago by
Jdnavarro
▴ 410
49
votes
27
replies
7.2k
views
10 follow
Forum:
Possible augmented reality tools for bioinformatics and current problems
visualization
3D
augmented-reality
updated 12 months ago by
Ram
43k • written 8.4 years ago by
Peter Leontev
▴ 90
7
votes
1
reply
7.1k
views
Forum:
What are chromatin states ?
genome
ChIP-Seq
7 weeks ago by
rohitsatyam102
▴ 840
22
votes
16
replies
7.0k
views
9 follow
Forum:
Large Tables In Supplementary Pdf In Journal Articles
publication
updated 13 months ago by
Ram
43k • written 10.8 years ago by
dario.garvan
▴ 520
0
votes
0
replies
7.0k
views
Forum:
Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline
Calling
Variant
Capture
Sequencing
11 months ago by
Alexandre Eeckhoutte
• 0
6
votes
16
replies
7.0k
views
6 follow
Forum:
Immune repertoire sequencing community
sequencing
repseq
immunology
tcr
ig
updated 2.1 years ago by
Ram
43k • written 9.6 years ago by
mikhail.shugay
3.5k
12
votes
9
replies
7.0k
views
9 follow
Forum:
Bioinformatics and wet lab science combined
career
updated 12 months ago by
Ram
43k • written 8.7 years ago by
tretyacv
▴ 40
15
votes
6
replies
7.0k
views
Forum:
What to look for in a potential postdoc?
genomics
Postdoc
updated 12 months ago by
Ram
43k • written 9.8 years ago by
pm2012
▴ 140
40
votes
11
replies
6.9k
views
9 follow
Forum:
"An Explosion Of Bioinformatics Careers" - from Science Careers
career
updated 12 months ago by
Ram
43k • written 9.8 years ago by
Pawel Szczesny
3.2k
113
votes
53
replies
6.9k
views
16 follow
Forum:
Middle author, but not first author projects. How would you approach this?
authorship
career-development
updated 10 months ago by
Ram
43k • written 5.0 years ago by
pet.bioinformatician
▴ 170
18
votes
13
replies
6.9k
views
7 follow
Forum:
Being co-first author for two nature series journals, what kinds of job can I find ?
phd
updated 17 months ago by
Ram
43k • written 7.3 years ago by
zengxi.hada
▴ 90
14
votes
5
replies
6.9k
views
Forum:
Seurat vs Monocle
R
RNA-Seq
next-gen
single-cell
updated 10 months ago by
Ram
43k • written 4.7 years ago by
Arup Ghosh
3.2k
13
votes
1
reply
6.8k
views
Forum:
The Ensembl Vep For Easy Analysis Of Your Variants
ensembl
VEP
variation
updated 13 months ago by
Ram
43k • written 10.2 years ago by
Emily
23k
28
votes
1
reply
6.8k
views
Forum:
Bedops: The Fastest, Most Scalable, And Easily-Parallelizable Genome Analysis Toolkit!
bedops
genome-analysis
updated 13 months ago by
Ram
43k • written 10.8 years ago by
Alex Reynolds
35k
20
votes
24
replies
6.8k
views
6 follow
Forum:
Python or R
RNA-Seq
alignment
next-gen-sequencing
updated 10 months ago by
Ram
43k • written 5.8 years ago by
Qingyang Xiao
▴ 160
28
votes
14
replies
6.8k
views
9 follow
Forum:
How Do You Use Cloud Computing For Bioinformatics In 2013?
cloud
updated 13 months ago by
Ram
43k • written 10.8 years ago by
Eric Normandeau
11k
29
votes
4
replies
6.8k
views
Forum:
Biostar Vs. Seqanswers: What Is The Difference?
biostars
updated 13 months ago by
Ram
43k • written 10.9 years ago by
jobinv
★ 1.1k
6
votes
2
replies
6.7k
views
Forum:
Looking For Articles That Used Multi-Omic Techniques For Personalized Or Familial Clinical Studies
proteomics
genomics
updated 13 months ago by
Ram
43k • written 10.8 years ago by
Khader Shameer
18k
32
votes
14
replies
6.7k
views
9 follow
Forum:
Pat Schloss of Mothur uses this
uses-this
updated 12 months ago by
Ram
43k • written 9.4 years ago by
Istvan Albert
100k
1,000 results • Page
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Recent Votes
Answer: log2(TPM+1)
Comment: Error in openning FastQC
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
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Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Yikes. Well, this is from an Illumina MiniSeq. Sure, I will use alignment, but only to remove host reads. Then the remaining reads will go …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
This is going to be tough to diagnose. Are you going to align to a reference? If so go ahead with the alignments to see if alignments turn …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
Comment: Error running local blastn in R using system2
by
Mensur Dlakic
★ 26k
The `-db data/nt_euk` switch means that in your current directory you have a subdirectory called `data`, and all the `nt_euk` files are in …
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your opinion. I will try with lower LEADING and TRAILING bases. By the way, I tried to set `keepBothReads:true` through sear…
Comment: Error in openning FastQC
by
GenoMax
140k
At this point it would be beneficial to learn some of the basics of command line. Please use this UNIX tutorial since you seem to be new to…
Comment: vcf file: number of samples does not match number of columns
by
Pierre Lindenbaum
160k
> ore or have any suggestions for fixing it? it's a problem with your upstream process. You'd better fix it.
Comment: Error in openning FastQC
by
friszd
• 0
after running fastqc -o output.html input.fastq, terminal returns: " Specified output directory 'output.html' does not exist " , when i run…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
The question you should be looking into is why the Q scores are dropping there? Are there `N` calls indicating some issue with that cycle?
Comment: Error in openning FastQC
by
GenoMax
140k
What is `ctrl+c ctrl+v`? You may actually be killing the running fastqc process. If you run `fastqc` interactively (like what was shown ab…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
Ugh. I've definitely done this one before as well. And was none too happy about it.
Comment: Error in openning FastQC
by
friszd
• 0
fastqc -o output.html input.fastq ctrl+c ctrl+v
Comment: Error running local blastn in R using system2
by
GenoMax
140k
What do you see if you `cat nt_euk.nal`? Do the number of pieces mentioned in that file match with what you locally have?
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
It is your data and if you want to do that it is up to you. You may be throwing away essentially good data (you should remove the nextera s…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Istvan Albert
100k
Some things never change ... the most common mistake is still the one on top there
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