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1,000 results • Page 3 of 20
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49
votes
36
replies
7.9k
views
11 follow
Forum: New features and bug fixes for Biostar to work on during Google Summer of Code
meta biostars gsoc
updated 7 months ago by 40k • written 9.4 years ago by ▴ 110
3
votes
5
replies
7.8k
views
Forum: PopGenome nucleotide diversity
next-gen SNP R gene
updated 6 months ago by 40k • written 7.6 years ago by ▴ 10
28
votes
14
replies
7.7k
views
8 follow
Forum: Should I work first in a Bioinformatics company or get a Ph. D.?
Biochemistry PhD career
updated 6 months ago by 40k • written 7.4 years ago by ▴ 20
22
votes
15
replies
7.6k
views
11 follow
Forum: RNASeq user experience with Novogene?
RNA-Seq
updated 4 months ago by 40k • written 5.3 years ago by ▴ 80
68
votes
48
replies
7.6k
views
16 follow
Forum: Stranger Things: unexpected limitations of popular tools
samtools hisat2
updated 4 months ago by 40k • written 6.2 years ago by 98k
60
votes
28
replies
7.6k
views
27 follow
Forum: Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 6 months ago by 40k • written 9.0 years ago by 98k
36
votes
18
replies
7.6k
views
Forum: How Does Genomebrowse Free Genome Browser From Golden Helix Compare?
visualization genome-browser
updated 2.5 years ago by 20 • written 10.5 years ago by ▴ 140
116
votes
35
replies
7.6k
views
18 follow
Forum: Is Biostar Killing The Bioinformatics Core?
core biostars
updated 7 months ago by 40k • written 10.5 years ago by 21k
5
votes
4
replies
7.6k
views
Forum: Masters In Bioinformatics Vs Masters In Information Technology (Computer Science)
career
updated 7 months ago by 40k • written 9.5 years ago by • 0
34
votes
19
replies
7.5k
views
12 follow
Forum: Programming Language In Bioinformatics
perl python
updated 7 months ago by 40k • written 10.4 years ago by ▴ 260
8
votes
12
replies
7.4k
views
9 follow
Forum: Mac Osx Confusing Vcf With Vcard
vcf
updated 7 months ago by 40k • written 10.5 years ago by ▴ 80
5
votes
6
replies
7.4k
views
Forum: Msc Bioinformatics Project Ideas
project
updated 7 months ago by 40k • written 11.4 years ago by ▴ 50
42
votes
15
replies
7.4k
views
8 follow
Forum: Directions In Bioinformatics And Web-Based Data Visualization: Revisiting Javascript?
data-visualization python r
updated 7 months ago by 40k • written 10.9 years ago by 5.7k
15
votes
9
replies
7.3k
views
9 follow
Forum: Skills & qualities required to be a Bioinformatician
career skills
updated 15 months ago by 40k • written 6.5 years ago by ▴ 70
29
votes
4
replies
7.3k
views
Forum: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
software-error bowtie2 bioconda conda tbb
updated 6 months ago by 40k • written 2.6 years ago by ▴ 240
16
votes
6
replies
7.2k
views
7 follow
Forum: What computer skills should I put on my resume?
resume genome
updated 4 months ago by 40k • written 5.8 years ago by ▴ 30
9
votes
1
reply
7.1k
views
Forum: Master in statistics or bioinformatics
masters career statistics
updated 3 months ago by 40k • written 9.4 years ago by ▴ 50
61
votes
16
replies
7.1k
views
14 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 8 months ago by ★ 1.3k • written 3.0 years ago by 8.2k
2
votes
3
replies
7.1k
views
Forum: How To Correctly Speed Up Blast Using Num_Threads
blast blast-plus
updated 7 months ago by 40k • written 9.6 years ago by ▴ 40
26
votes
12
replies
7.1k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 5 months ago by ▴ 10 • written 9.9 years ago by ▴ 50
68
votes
22
replies
7.1k
views
16 follow
Forum: Learning Python: list of resources
python
updated 5 months ago by 40k • written 6.9 years ago by ★ 2.8k
82
votes
32
replies
7.0k
views
13 follow
Forum: Shall We Go Back To Stackexchange?
meta
updated 7 months ago by 40k • written 10.9 years ago by ★ 3.6k
72
votes
18
replies
7.0k
views
17 follow
Forum: What Is One Book Every Bioinformatician Should Read?
books
updated 7 months ago by 40k • written 10.3 years ago by 7.9k
65
votes
57
replies
7.0k
views
12 follow
Forum: Bioinformatics Mobile App
android genome iphone mutations
updated 20 months ago by 40k • written 8.9 years ago by ▴ 20
0
votes
0
replies
6.8k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
6 months ago by Alexandre Eeckhoutte • 0
6
votes
5
replies
6.8k
views
Forum: Converting GFF to GTF
GTF GFF
updated 3 months ago by 40k • written 3.6 years ago by 8.3k
49
votes
19
replies
6.8k
views
13 follow
Forum: Why Are There No Proteomics Questions In Biostar?
proteomics biostars
updated 7 months ago by 40k • written 12.9 years ago by ▴ 410
15
votes
6
replies
6.7k
views
Forum: Calling Single-Barcode Samples from Mixed Runs as Dual-Barcode Samples | Possible Illumina Run QC Flags?
Illumina De-Multiplexing barcode quality-scores
updated 7 months ago by 40k • written 4.4 years ago by 8.2k
15
votes
6
replies
6.7k
views
Forum: What to look for in a potential postdoc?
genomics Postdoc
updated 7 months ago by 40k • written 9.3 years ago by ▴ 140
129
votes
38
replies
6.7k
views
21 follow
Forum: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
bioinformatics
updated 4 months ago by 40k • written 4.5 years ago by 98k
22
votes
16
replies
6.7k
views
9 follow
Forum: Large Tables In Supplementary Pdf In Journal Articles
publication
updated 7 months ago by 40k • written 10.3 years ago by ▴ 510
65
votes
27
replies
6.7k
views
14 follow
Forum: What is the reason for most software errors in Bioinformatics according to you?
software-error blast sequencing SNP R
updated 6 months ago by 40k • written 7.5 years ago by ▴ 110
6
votes
16
replies
6.7k
views
6 follow
Forum: Immune repertoire sequencing community
sequencing repseq immunology tcr ig
updated 19 months ago by 40k • written 9.2 years ago by 3.5k
29
votes
4
replies
6.7k
views
Forum: Biostar Vs. Seqanswers: What Is The Difference?
biostars
updated 7 months ago by 40k • written 10.4 years ago by ★ 1.1k
40
votes
11
replies
6.6k
views
9 follow
Forum: "An Explosion Of Bioinformatics Careers" - from Science Careers
career
updated 7 months ago by 40k • written 9.3 years ago by 3.2k
28
votes
1
reply
6.6k
views
Forum: Bedops: The Fastest, Most Scalable, And Easily-Parallelizable Genome Analysis Toolkit!
bedops genome-analysis
updated 7 months ago by 40k • written 10.3 years ago by 35k
6
votes
2
replies
6.6k
views
Forum: Looking For Articles That Used Multi-Omic Techniques For Personalized Or Familial Clinical Studies
proteomics genomics
updated 7 months ago by 40k • written 10.3 years ago by 18k
13
votes
1
reply
6.6k
views
Forum: The Ensembl Vep For Easy Analysis Of Your Variants
ensembl VEP variation
updated 7 months ago by 40k • written 9.7 years ago by 23k
18
votes
4
replies
6.6k
views
Forum: Useful Resource To Self-Study Bioinformatics
resource
updated 7 months ago by 40k • written 10.9 years ago by ★ 1.5k
28
votes
14
replies
6.5k
views
9 follow
Forum: How Do You Use Cloud Computing For Bioinformatics In 2013?
cloud
updated 7 months ago by 40k • written 10.3 years ago by 11k
20
votes
15
replies
6.5k
views
Forum: How To Analyze Your Own Exome
exome filtering analysis vcf variant
updated 2.5 years ago by 40k • written 10.1 years ago by ▴ 130
12
votes
9
replies
6.5k
views
9 follow
Forum: Bioinformatics and wet lab science combined
career
updated 6 months ago by 40k • written 8.2 years ago by ▴ 40
31
votes
34
replies
6.5k
views
11 follow
Forum: pros- and cons- : programming skills vs. GUI
programming lecture
updated 6 months ago by 40k • written 7.8 years ago by ★ 4.7k
49
votes
27
replies
6.5k
views
10 follow
Forum: Possible augmented reality tools for bioinformatics and current problems
visualization 3D augmented-reality
updated 6 months ago by 40k • written 8.0 years ago by ▴ 90
12
votes
1
reply
6.4k
views
Forum: Robert Edgar of USearch and MUSCLE uses this
uses-this
updated 6 months ago by 40k • written 9.0 years ago by 98k
14
votes
5
replies
6.4k
views
Forum: Seurat vs Monocle
R RNA-Seq next-gen single-cell
updated 4 months ago by 40k • written 4.3 years ago by 3.2k
32
votes
14
replies
6.4k
views
9 follow
Forum: Pat Schloss of Mothur uses this
uses-this
updated 6 months ago by 40k • written 8.9 years ago by 98k
25
votes
9
replies
6.4k
views
Forum: Storage Solutions For Genomic Research Centers
data parallel genomics
updated 7 months ago by 40k • written 10.1 years ago by ▴ 140
20
votes
24
replies
6.4k
views
6 follow
Forum: Python or R
RNA-Seq alignment next-gen-sequencing
updated 4 months ago by 40k • written 5.3 years ago by ▴ 160
7
votes
1
reply
6.4k
views
Forum: What are chromatin states ?
genome ChIP-Seq
updated 4 months ago by 40k • written 4.0 years ago by ▴ 760
1,000 results • Page 3 of 20
Recent Votes
Answer: tensorQTL interaction issue
Answer: Script for getting summary statistic of any genome using GTF or GFF3 ?
Comment: How do you validate and verify your pipeline's software updates?
Comment: How do you validate and verify your pipeline's software updates?
Answer: GSEA with GO and KEGG datasets
GSEA with GO and KEGG datasets
Answer: Exporting DEGs obtained from DESeq2
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Recent Replies
Comment: How to get sample names and genotype for SNP in multi-sample VCF file by Kevin Blighe 86k
It is difficult for me to comment, as I am not too informed on your IT infrastructure. What I can say is that it would be better to run the…
Answer: Converting from BED to SAF/GFF by alejandrogzi ▴ 30
I recently developed [bed2gff](https://github.com/alejandrogzi/bed2gff) to quickly convert .bed files to a gff3 format, a tool written in R…
Comment: Convert bed12 to GFF by alejandrogzi ▴ 30
Now there is [bed2gff](https://github.com/alejandrogzi/bed2gff), if you want to work only with a gff file!
Comment: Converting different annotation file formats (GTF/GFF/BED) to each other by alejandrogzi ▴ 30
now there is also [bed2gff](https://github.com/alejandrogzi/bed2gff) if you want to convert .bed files to .gff3 files!
Answer: How Do I Convert From Bed Format To Gff Format? by alejandrogzi ▴ 30
I recently developed [bed2gff](https://github.com/alejandrogzi/bed2gff) to quickly convert .bed files to a gff3 format, a tool written in R…
Answer: tensorQTL interaction issue by Solal • 0
Writing a solution for anyone interested. The issue stems from a dosage error, some variant contains only heterozygous individuals and no h…
Answer: The Biostar Handbook. A bioinformatics e-book for beginners. by Qboy • 0
Great book! I love using it to help my mentees to learn bioinformatics better. It would be also fantastic to compile all other necessary Pr…
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
Thanks. I'll try.
Comment: How to get sample names and genotype for SNP in multi-sample VCF file by avelarbio46 ▴ 30
Hi! I'm trying to parallelize your code (to run on a bunch of files), but it is not working because of multiple processes spawning. Do you …
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by GenoMax 135k
> so I don't think the genome size is available. Perhaps not for your specific strain but plenty of other Kpn genomes are available and th…
Comment: Kimura% of calcDivergenceFromAlign output by 睿紘 • 0
For additional information, "Coverage for each repeat class and divergence (Kimura)" is also the result from calcDivergenceFromAlign.pl
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
By the way, I run Rockhopper on the untrimmed files, and the full match percentage grew to 20%-30%, and there are 1552 transcripts in the u…
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
Here are the total bases in 4 fastq files (after adapter removal): 1,027,852,411, 1,041,895,083, 1,121,786,520, 1,299,721,929. I just rem…
Comment: Understanding mother and father alleles in VCF file by c. • 0
actually they didn't tell me which relatives were from mother side and which from father side, you are right. But how can you find related …
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by GenoMax 135k
Correct. Data that went into the assembly.
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