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446 results • Page 1 of 9
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262
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48
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20k
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37 follow
Forum: Bioinformatics courses, workshops or training
Workshop Training Courses
updated 23 days ago by ▴ 970 • written 7.9 years ago by ★ 4.2k
206
votes
58
replies
38k
views
31 follow
Forum: Will Python Take The Place Of R?
r statistics python biopython
updated 25 days ago by 38k • written 9.8 years ago by 9.5k
159
votes
38
replies
15k
views
22 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
updated 26 days ago by 38k • written 10.0 years ago by 97k
151
votes
39
replies
22k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics
updated 26 days ago by 38k • written 10.2 years ago by 3.0k
136
votes
41
replies
20k
views
20 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
meta
updated 25 days ago by 38k • written 9.8 years ago by ★ 1.6k
126
votes
44
replies
27k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 12 days ago by 38k • written 6.5 years ago by ▴ 970
115
votes
35
replies
36k
views
20 follow
Forum: Snakemake vs. Nextflow: strengths and weaknesses
snakemake nextflow Forum
updated 11 days ago by ▴ 30 • written 5.8 years ago by ▴ 760
106
votes
23
replies
20k
views
16 follow
Forum: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
bioinformatics
updated 19 days ago by 38k • written 9.1 years ago by ▴ 570
105
votes
46
replies
11k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 22 days ago by 38k • written 9.6 years ago by ★ 1.1k
99
votes
21
replies
7.9k
views
14 follow
Forum: How Has Bioinformatics Improved Over Time?
bioinformatics
updated 26 days ago by 38k • written 10.1 years ago by ▴ 370
93
votes
50
replies
14k
views
17 follow
Forum: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
personal-genomics 23andMe
updated 20 days ago by 38k • written 9.3 years ago by 97k
84
votes
22
replies
3.4k
views
12 follow
Forum: is fortran still used in bioinformatics?
FORTRAN R
updated 12 days ago by 38k • written 3.8 years ago by ▴ 180
82
votes
32
replies
6.4k
views
13 follow
Forum: Shall We Go Back To Stackexchange?
meta
updated 27 days ago by 38k • written 10.3 years ago by ★ 3.6k
81
votes
21
replies
4.1k
views
16 follow
Forum: [UPDATE] Thrown into a Bioinformatics Position
bioinformatics
updated 5 days ago by 38k • written 6.8 years ago by ★ 3.2k
80
votes
23
replies
4.3k
views
11 follow
Forum: Are we facing a bioinformatician shortage?
salary career
updated 13 days ago by 38k • written 8.4 years ago by ★ 3.0k
72
votes
18
replies
6.7k
views
17 follow
Forum: What Is One Book Every Bioinformatician Should Read?
books
updated 22 days ago by 38k • written 9.7 years ago by 7.7k
67
votes
21
replies
5.0k
views
8 follow
Forum: Meta: Markdown in Biostars (now enabled)
meta
7 days ago by Ram 38k
66
votes
21
replies
5.6k
views
18 follow
Forum: Is there anyone who was a pure biologist?
next-gen
updated 15 days ago by 38k • written 8.9 years ago by ▴ 100
65
votes
26
replies
18k
views
13 follow
Forum: Macosx For Bioinformatics?
linux
updated 20 days ago by 38k • written 9.3 years ago by 11k
64
votes
8
replies
7.8k
views
7 follow
Forum: Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 25 days ago by 38k • written 9.9 years ago by 20k
63
votes
9
replies
3.5k
views
Forum: Should The "Post Closing" Option Exist? Vote Now!
meta
updated 25 days ago by 38k • written 9.8 years ago by 97k
61
votes
11
replies
14k
views
9 follow
Forum: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
programming
updated 22 days ago by 38k • written 9.7 years ago by 19k
60
votes
28
replies
7.2k
views
27 follow
Forum: Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 13 days ago by 38k • written 8.5 years ago by 97k
60
votes
14
replies
11k
views
14 follow
Forum: Interesting bioinformatics blogs (2017 edition)
blogs
updated 25 days ago by 38k • written 6.0 years ago by 47k
57
votes
19
replies
26k
views
6 follow
Forum: Attention: Bowtie2 And Multiple Hits
next-gen bowtie mapping
updated 27 days ago by 38k • written 10.4 years ago by 9.9k
57
votes
43
replies
14k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 12 days ago by 38k • written 4.2 years ago by 9.9k
52
votes
8
replies
4.3k
views
8 follow
Forum: What Is The Proper Way To Think About Reinventing The Wheel As A Bioinformatician?
software-development
updated 26 days ago by 38k • written 10.1 years ago by ★ 4.0k
50
votes
8
replies
9.0k
views
6 follow
Forum: Encode Commentary From Dan Graur
encode
updated 26 days ago by 38k • written 10.1 years ago by 16k
50
votes
20
replies
4.9k
views
18 follow
Forum: Explain bioinformatics to a 10 year old
bioinformatics
updated 12 days ago by 38k • written 7.0 years ago by ★ 1.1k
47
votes
7
replies
3.5k
views
7 follow
Forum: Would There Be Interest In A 'Next-Gen Sequencing' Stackexchange Site?
meta next-gen
updated 27 days ago by 38k • written 10.3 years ago by ★ 3.6k
47
votes
11
replies
3.6k
views
Forum: What Operating System Are You Using For Bioinformatic Work?
linux windows
updated 20 days ago by 38k • written 9.3 years ago by 11k
47
votes
37
replies
7.3k
views
12 follow
Forum: The Organisation Of Really Contrived Acronyms (Orca)
acronyms
updated 22 days ago by 38k • written 9.6 years ago by 2.3k
46
votes
9
replies
7.8k
views
10 follow
Forum: Bioinformatics For Clinicians - What To Teach Them?
education
updated 20 days ago by 38k • written 9.3 years ago by ▴ 140
44
votes
11
replies
4.8k
views
7 follow
Forum: Asking The Developers Before Asking Biostars
meta
updated 22 days ago by 38k • written 9.5 years ago by ▴ 850
43
votes
16
replies
4.0k
views
10 follow
Forum: Need Advice On How To Become A Senior Bioinformatician
advice career
updated 25 days ago by 38k • written 9.9 years ago by ▴ 30
42
votes
15
replies
7.0k
views
8 follow
Forum: Directions In Bioinformatics And Web-Based Data Visualization: Revisiting Javascript?
data-visualization python r
updated 27 days ago by 38k • written 10.4 years ago by 5.7k
42
votes
21
replies
14k
views
10 follow
Forum: A Database Of Signatures Of Selection In The 1000 Genomes Dataset
1000genomes human selection
updated 18 days ago by 38k • written 9.1 years ago by 27k
41
votes
17
replies
35k
views
15 follow
Forum: List Of Genome Sequencing Centers/Institutes
genomics institutes
updated 26 days ago by 38k • written 10.1 years ago by 19k
40
votes
24
replies
2.1k
views
13 follow
Forum: What programming language do you use the most in your work? Which one do you like the best?
Programming Python R Scripting
updated 12 days ago by 38k • written 2.1 years ago by ▴ 80
40
votes
11
replies
6.3k
views
9 follow
Forum: "An Explosion Of Bioinformatics Careers" - from Science Careers
career
updated 15 days ago by 38k • written 8.8 years ago by 3.2k
37
votes
30
replies
4.0k
views
7 follow
Forum: Spam In Rss Feeds
meta RSS
updated 26 days ago by 38k • written 10.2 years ago by 5.3k
37
votes
13
replies
3.1k
views
6 follow
Forum: Bringing Back Downvote
meta
updated 22 days ago by 38k • written 9.8 years ago by 33k
36
votes
21
replies
16k
views
9 follow
Forum: What Is Your Favorite Conserved Protein?
protein conservation
updated 22 days ago by 38k • written 9.6 years ago by 11k
36
votes
2
replies
5.7k
views
Forum: Brian Haas of the Trinity Assembler uses this
uses-this
updated 13 days ago by 38k • written 8.4 years ago by 97k
35
votes
19
replies
3.3k
views
Forum: Crowd Sourcing The 'Analysis' Of The 'Big Foot' Genome
bigfoot genome
updated 26 days ago by 38k • written 10.1 years ago by 4.5k
34
votes
13
replies
5.6k
views
11 follow
Forum: Best Way To Learn Bioinformatics For System Level Programmers.
NGS HPC
updated 19 days ago by 38k • written 9.2 years ago by ▴ 90
34
votes
19
replies
7.1k
views
12 follow
Forum: Programming Language In Bioinformatics
perl python
updated 26 days ago by 38k • written 9.9 years ago by ▴ 260
33
votes
17
replies
2.7k
views
7 follow
Forum: What bioinformatics tools/software do not get enough recognition?
software
updated 13 days ago by 38k • written 8.4 years ago by 24k
32
votes
13
replies
10k
views
10 follow
Forum: What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
genomics phd
updated 29 days ago by 38k • written 10.6 years ago by ▴ 650
32
votes
14
replies
6.1k
views
9 follow
Forum: Pat Schloss of Mothur uses this
uses-this
updated 13 days ago by 38k • written 8.4 years ago by 97k
446 results • Page 1 of 9
Recent Votes
Answer: Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
Answer: API REST ALINGMENT
Comment: Can I use abundance from Tximport to compare the expression level of transcript
Comment: getting coding exon information from Ensembl API
C: How to install TMAP
If there is a way to link two gosling html components in two <div>s.
A: Using GATK's HaplotypeCaller or Mutect2 for somatic cancer samples with no norma
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Recent Replies
Answer: Multiple samples and species with kallisto bus(tools) by dsull ★ 4.0k
Hello! There are two questions here: 1) Mixed species, and 2) Multiple samples Let's start with question 1: You don't really know what c…
Comment: What is exactly meant by "GENCODE TSS"? by ConvolutedGenome ▴ 10
I dont think im confusing the two, is what I meant: I originally said that the “start” coordinate of every entry termed “transcript” under…
Comment: getting coding exon information from Ensembl API by Ram 38k
Your account has been suspended for bad behavior. I've re-opened the posts that you deleted because those posts belong to the community, no…
Comment: Can I use abundance from Tximport to compare the expression level of transcript by Ram 38k
No. I think you can compare average TPMs as long as you explicitly mention that anywhere you report metrics but don't average counts.
Comment: Manta and alignment name collision by Pierre Lindenbaum 153k
I wrote https://jvarkit.readthedocs.io/en/latest/SamRemoveDuplicatedNames/ to remove this kind of reads, but I'm not sure it's what you're …
Comment: getting coding exon information from Ensembl API by Nobody ▴ 30
can you delete my account please, because i can't do it by myself. Thank you
Comment: Java -xmx option does not limit memory usage in the ImputePipelinePlugin? by twrl8 • 0
Thank you very much! I will try using the singularity options. Thank you for that aswell. I will keep an eye on the docker hub for newer v…
Comment: Is there a site that takes a list of uniprot IDs/gene IDs as input and create ph by Pierre Lindenbaum 153k
ncbi blast a sequence accession vs the other ? then select the multiple sequence alignment view ?
Comment: Can I use abundance from Tximport to compare the expression level of transcript by aimanbarki ▴ 20
So can I average 6 replicates??
Comment: How can I easily remove overlapping transcripts, keeping only longest transcript by Juke34 7.7k
Don't use `--merge_loci` in your command line this was for AGAT version <1.0.0 (and only few scripts), now this is handled via the config.y…
Comment: getting coding exon information from Ensembl API by Ram 38k
> Because you just answer No we don't. I think you're confusing this professional forum contributed to by volunteers with a customer suppo…
Comment: Can I use abundance from Tximport to compare the expression level of transcript by Ram 38k
Oh, you can just use TPM to do that. Within sample comparison is a completely different (and much easier) game.
Comment: ClusterProfiler enrichKEGG – remove organism name in plots? by Sian • 0
Unfortunately yes, there does seem to be a problem with using the older version - when I came to do more analysis yesterday, the enrichKEGG…
Comment: getting coding exon information from Ensembl API by Nobody ▴ 30
Because you just answer when it's a stupid question or when I ask a lot of questions. This is for asking questions not for being judged by …
Comment: KM Plot for gene of interest (e.g. TP53) using TCGA-PAAD dataset by Manav • 0
Thanks, tried working with the dataset and workflow. It worked.
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